Wall clock time and date at job start Wed Apr 1 2020 05:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47065 * 2 1 4 4 C 1.36935 * 119.99627 * 275.77512 * 3 2 1 5 5 H 1.08007 * 119.99854 * 324.15130 * 4 3 2 6 6 C 1.38811 * 119.99769 * 144.15344 * 4 3 2 7 7 N 1.31616 * 120.00193 * 346.39175 * 6 4 3 8 8 Si 1.86803 * 119.99684 * 166.38697 * 6 4 3 9 9 H 1.48494 * 109.47470 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46792 * 120.00216 * 8 6 4 11 11 H 1.48501 * 109.47089 * 239.99562 * 8 6 4 12 12 C 1.46491 * 119.99820 * 95.77784 * 3 2 1 13 13 H 1.09007 * 109.47024 * 180.29522 * 12 3 2 14 14 C 1.53005 * 109.47427 * 300.29165 * 12 3 2 15 15 C 1.50695 * 109.47724 * 60.29647 * 12 3 2 16 16 O 1.21289 * 119.99618 * 359.97438 * 15 12 3 17 17 N 1.34775 * 120.00516 * 179.97438 * 15 12 3 18 18 C 1.39921 * 120.00476 * 184.76197 * 17 15 12 19 19 C 1.38947 * 120.03220 * 322.41363 * 18 17 15 20 20 C 1.38136 * 120.07036 * 180.02562 * 19 18 17 21 21 C 1.38186 * 120.13805 * 359.67251 * 20 19 18 22 22 C 1.38900 * 120.06877 * 0.60210 * 21 20 19 23 23 N 1.39923 * 120.03434 * 179.70193 * 22 21 20 24 24 C 1.46762 * 124.34902 * 354.16354 * 23 22 21 25 25 C 1.54482 * 105.47428 * 197.04228 * 24 23 22 26 26 C 1.54629 * 101.76668 * 334.58635 * 25 24 23 27 27 C 1.34417 * 124.35118 * 174.19870 * 23 22 21 28 28 O 1.21286 * 124.94236 * 359.52319 * 27 23 22 29 29 C 1.38729 * 120.03867 * 142.43369 * 18 17 15 30 30 H 1.08996 * 109.46987 * 60.00330 * 1 2 3 31 31 H 1.09007 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47370 * 300.00445 * 1 2 3 33 33 H 1.08997 * 109.47282 * 239.99352 * 2 1 3 34 34 H 1.09010 * 109.46751 * 119.99676 * 2 1 3 35 35 H 0.97001 * 119.99983 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46978 * 300.00791 * 14 12 3 37 37 H 1.09000 * 109.46650 * 60.00557 * 14 12 3 38 38 H 1.08995 * 109.47096 * 180.02562 * 14 12 3 39 39 H 0.97005 * 119.99689 * 4.75920 * 17 15 12 40 40 H 1.08000 * 119.96834 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.93179 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.96173 * 180.32555 * 21 20 19 43 43 H 1.09003 * 110.24653 * 78.04331 * 24 23 22 44 44 H 1.09002 * 110.25032 * 316.04296 * 24 23 22 45 45 H 1.09005 * 110.96893 * 216.46870 * 25 24 23 46 46 H 1.09003 * 110.96873 * 92.70547 * 25 24 23 47 47 H 1.08990 * 110.48877 * 143.47479 * 26 25 24 48 48 H 1.09003 * 110.48703 * 266.12134 * 26 25 24 49 49 H 1.07995 * 120.06752 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1340 2.0665 -1.1799 5 1 2.4386 1.5487 -2.0775 6 6 1.8598 3.4266 -1.2224 7 7 1.2386 4.0044 -0.2161 8 14 2.3724 4.4367 -2.7077 9 1 3.0489 3.5575 -3.6948 10 1 1.1700 5.0462 -3.3307 11 1 3.3052 5.5096 -2.2786 12 6 2.3828 2.0292 1.2622 13 1 2.7162 3.0481 1.0646 14 6 1.1659 2.0616 2.1891 15 6 3.4956 1.2556 1.9211 16 8 3.9401 0.2605 1.3889 17 7 3.9969 1.6694 3.1018 18 6 5.0953 1.0105 3.6650 19 6 5.2097 -0.3698 3.5549 20 6 6.2934 -1.0211 4.1111 21 6 7.2704 -0.3019 4.7727 22 6 7.1590 1.0776 4.8912 23 7 8.1456 1.8044 5.5667 24 6 9.2705 1.1997 6.2897 25 6 9.8160 2.3143 7.2098 26 6 9.3785 3.5900 6.4533 27 6 8.1844 3.1462 5.6374 28 8 7.3796 3.8925 5.1214 29 6 6.0711 1.7347 4.3344 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.0467 4.9548 -0.2460 36 1 0.3610 2.6212 1.7125 37 1 0.8326 1.0428 2.3867 38 1 1.4371 2.5441 3.1280 39 1 3.5962 2.4240 3.5610 40 1 4.4505 -0.9342 3.0338 41 1 6.3799 -2.0942 4.0245 42 1 8.1192 -0.8134 5.2020 43 1 10.0408 0.8788 5.5885 44 1 8.9256 0.3543 6.8851 45 1 10.9019 2.2597 7.2871 46 1 9.3534 2.2675 8.1957 47 1 9.0908 4.3710 7.1569 48 1 10.1782 3.9393 5.8001 49 1 5.9840 2.8076 4.4220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298106241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:35 Heat of formation + Delta-G solvation = -28.735997 kcal Electronic energy + Delta-G solvation = -30703.490576 eV Core-core repulsion = 26630.709188 eV Total energy + Delta-G solvation = -4072.781388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 10.12 seconds Orbital eigenvalues (eV) -42.14586 -41.30781 -39.42293 -37.85169 -37.45825 -35.74120 -33.92718 -33.79816 -32.61643 -30.79189 -30.13272 -29.70227 -28.56354 -26.16760 -25.15033 -24.31628 -23.81867 -22.80462 -21.88782 -21.40232 -20.37041 -19.23257 -18.68040 -18.09650 -17.67160 -17.38388 -16.98294 -16.59487 -16.50513 -16.10958 -15.75196 -15.45659 -15.22675 -14.91206 -14.83117 -14.68172 -14.53529 -14.37830 -14.16764 -13.68791 -13.60580 -13.56692 -13.31544 -13.13651 -13.01971 -12.90064 -12.77698 -12.69672 -12.51588 -12.30016 -12.18994 -12.11195 -11.99427 -11.66726 -11.50016 -11.39153 -10.88663 -10.72547 -10.62636 -10.50339 -9.38698 -8.84812 -8.58417 -7.92807 -5.45171 0.20585 0.30819 1.41897 1.45948 1.48302 1.55463 1.69127 1.81524 2.18129 2.49524 2.84634 3.24746 3.29456 3.56497 3.58806 3.91133 4.00784 4.06944 4.11732 4.17075 4.29082 4.43068 4.45378 4.52223 4.56727 4.62205 4.63320 4.67626 4.76617 4.84673 4.85421 4.89437 4.95690 5.07245 5.08832 5.12331 5.19943 5.28545 5.32733 5.32925 5.42645 5.47905 5.59602 5.64865 5.67556 5.71480 6.06738 6.09947 6.39105 6.49093 6.95436 7.09279 7.27693 7.79231 8.32527 9.11949 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.002826 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.584643 B = 9905.714796 C =11085.311194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 N -0.577 5.577 4 C -0.272 4.272 5 H 0.049 0.951 6 C -0.028 4.028 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.289 1.289 12 C 0.179 3.821 13 H 0.092 0.908 14 C -0.127 4.127 15 C 0.494 3.506 16 O -0.548 6.548 17 N -0.674 5.674 18 C 0.161 3.839 19 C -0.164 4.164 20 C -0.070 4.070 21 C -0.163 4.163 22 C 0.172 3.828 23 N -0.561 5.561 24 C 0.084 3.916 25 C -0.115 4.115 26 C -0.146 4.146 27 C 0.492 3.508 28 O -0.564 6.564 29 C -0.207 4.207 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.255 0.745 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.416 0.584 40 H 0.116 0.884 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.128 0.872 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.123 0.877 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.812 -6.562 20.800 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.025 3.975 3 N -0.297 5.297 4 C -0.402 4.402 5 H 0.066 0.934 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.216 1.216 12 C 0.068 3.932 13 H 0.109 0.891 14 C -0.186 4.186 15 C 0.282 3.718 16 O -0.425 6.425 17 N -0.321 5.321 18 C 0.066 3.934 19 C -0.185 4.185 20 C -0.089 4.089 21 C -0.184 4.184 22 C 0.077 3.923 23 N -0.284 5.284 24 C -0.036 4.036 25 C -0.153 4.153 26 C -0.185 4.185 27 C 0.283 3.717 28 O -0.443 6.443 29 C -0.230 4.230 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.253 0.747 40 H 0.134 0.866 41 H 0.176 0.824 42 H 0.183 0.817 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.147 0.853 46 H 0.114 0.886 47 H 0.133 0.867 48 H 0.141 0.859 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.621 -6.697 20.091 27.549 hybrid contribution -0.524 1.316 -1.139 1.818 sum 17.097 -5.380 18.951 26.085 Atomic orbital electron populations 1.22227 0.97932 1.00123 1.00876 1.20791 0.92611 0.85531 0.98524 1.43620 1.73033 1.10998 1.02069 1.19251 1.40114 0.92241 0.88612 0.93364 1.25787 0.97794 0.99043 0.99927 1.70029 1.41778 1.10703 1.32670 0.85357 0.77488 0.78530 0.79918 1.20179 1.21038 1.21581 1.20179 0.90601 0.96033 0.86414 0.89067 1.21961 0.98522 1.00484 0.97633 1.23170 0.84183 0.85209 0.79206 1.90542 1.61041 1.26925 1.63946 1.43889 1.31029 1.35211 1.21940 1.17885 0.88430 0.91847 0.95285 1.21257 1.01574 0.92592 1.03081 1.21152 0.91935 1.01161 0.94672 1.21021 1.02155 0.90653 1.04552 1.17613 0.88228 0.91833 0.94663 1.46102 1.25348 1.07089 1.49827 1.22709 0.86837 0.98419 0.95654 1.22691 1.04491 0.89936 0.98169 1.22424 0.94978 1.01203 0.99927 1.22259 0.87531 0.81664 0.80211 1.90643 1.45455 1.58593 1.49601 1.21244 0.94601 1.01386 1.05765 0.94858 0.91902 0.93422 0.95496 0.93578 0.93599 0.91674 0.93702 0.91962 0.74736 0.86596 0.82410 0.81691 0.88408 0.87543 0.85347 0.88614 0.86676 0.85874 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 10.01 71.98 0.72 -5.58 16 2 C 0.15 7.05 5.07 86.38 0.44 7.49 16 3 N -0.58 -30.26 2.13 -682.20 -1.46 -31.72 16 4 C -0.27 -15.54 9.52 84.03 0.80 -14.74 16 5 H 0.05 2.84 7.87 -2.91 -0.02 2.82 16 6 C -0.03 -1.53 4.93 84.86 0.42 -1.12 16 7 N -0.91 -50.69 10.52 21.65 0.23 -50.46 16 8 Si 0.96 45.67 29.58 68.60 2.03 47.70 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 C 0.18 8.60 2.18 44.25 0.10 8.69 16 13 H 0.09 4.92 6.10 -2.38 -0.01 4.91 16 14 C -0.13 -5.28 7.99 71.98 0.58 -4.71 16 15 C 0.49 22.28 6.69 87.66 0.59 22.87 16 16 O -0.55 -27.27 12.23 -3.06 -0.04 -27.31 16 17 N -0.67 -25.71 5.25 -303.56 -1.59 -27.31 16 18 C 0.16 5.82 6.25 38.14 0.24 6.06 16 19 C -0.16 -5.51 8.68 22.42 0.19 -5.32 16 20 C -0.07 -1.73 10.03 22.23 0.22 -1.50 16 21 C -0.16 -3.42 9.40 22.42 0.21 -3.21 16 22 C 0.17 4.53 6.59 38.13 0.25 4.78 16 23 N -0.56 -11.24 3.14 -627.76 -1.97 -13.21 16 24 C 0.08 0.64 6.26 86.83 0.54 1.18 16 25 C -0.12 -0.35 7.18 31.65 0.23 -0.13 16 26 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 27 C 0.49 11.43 7.92 87.90 0.70 12.13 16 28 O -0.56 -19.29 14.81 -3.05 -0.05 -19.34 16 29 C -0.21 -7.02 9.20 22.51 0.21 -6.81 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.05 1.95 6.09 -2.38 -0.01 1.94 16 33 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.05 2.11 6.48 -2.38 -0.02 2.09 16 35 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 36 H 0.06 3.04 7.35 -2.39 -0.02 3.02 16 37 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 38 H 0.06 2.17 7.47 -2.39 -0.02 2.15 16 39 H 0.42 14.03 8.12 -92.70 -0.75 13.28 16 40 H 0.12 4.38 6.41 -2.91 -0.02 4.36 16 41 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.17 1.98 7.01 -2.91 -0.02 1.96 16 43 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.11 0.45 7.70 -2.39 -0.02 0.43 16 45 H 0.13 -0.35 8.14 -2.38 -0.02 -0.37 16 46 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.14 5.14 5.25 -2.91 -0.02 5.12 16 Total: -1.00 -78.25 387.65 4.02 -74.23 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.23 Total: 28.62 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.64 Total: 18.80 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -4.79 Total: -122.70 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.08 Total: -46.65 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.25 4.02 -74.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298106241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.491 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.13 seconds