Wall clock time and date at job start Wed Apr 1 2020 05:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47285 * 2 1 4 4 C 1.36929 * 119.99916 * 85.95256 * 3 2 1 5 5 H 1.08004 * 119.99995 * 222.46526 * 4 3 2 6 6 C 1.38810 * 120.00372 * 42.46154 * 4 3 2 7 7 N 1.31620 * 120.00217 * 210.77950 * 6 4 3 8 8 Si 1.86803 * 119.99937 * 30.78015 * 6 4 3 9 9 H 1.48492 * 109.47347 * 92.91448 * 8 6 4 10 10 H 1.48502 * 109.46959 * 212.91703 * 8 6 4 11 11 H 1.48505 * 109.46725 * 332.91703 * 8 6 4 12 12 C 1.46500 * 120.00250 * 265.94505 * 3 2 1 13 13 H 1.08992 * 109.47029 * 175.21026 * 12 3 2 14 14 C 1.53006 * 109.46918 * 55.21391 * 12 3 2 15 15 C 1.50701 * 109.47352 * 295.21675 * 12 3 2 16 16 O 1.21291 * 119.99772 * 15.17260 * 15 12 3 17 17 N 1.34777 * 119.99632 * 195.17334 * 15 12 3 18 18 C 1.40079 * 119.99511 * 185.14496 * 17 15 12 19 19 C 1.38866 * 120.00101 * 327.32876 * 18 17 15 20 20 C 1.38046 * 119.99689 * 179.76312 * 19 18 17 21 21 C 1.38876 * 120.00015 * 0.47941 * 20 19 18 22 22 N 1.40074 * 120.00074 * 179.76798 * 21 20 19 23 23 C 1.46765 * 124.35189 * 185.93534 * 22 21 20 24 24 C 1.54478 * 105.47219 * 197.01622 * 23 22 21 25 25 C 1.54626 * 101.76604 * 334.57793 * 24 23 22 26 26 C 1.34418 * 124.34789 * 5.63044 * 22 21 20 27 27 O 1.21297 * 124.94489 * 359.57723 * 26 22 21 28 28 C 1.38868 * 119.99814 * 359.79806 * 21 20 19 29 29 C 1.38042 * 120.00360 * 359.94845 * 28 21 20 30 30 H 1.08995 * 109.47180 * 55.51499 * 1 2 3 31 31 H 1.08999 * 109.47139 * 175.51936 * 1 2 3 32 32 H 1.09000 * 109.46625 * 295.52116 * 1 2 3 33 33 H 1.09002 * 109.47410 * 120.00638 * 2 1 3 34 34 H 1.09007 * 109.46539 * 240.00228 * 2 1 3 35 35 H 0.97005 * 119.99787 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47079 * 300.00071 * 14 12 3 37 37 H 1.08999 * 109.47195 * 59.99526 * 14 12 3 38 38 H 1.08997 * 109.47122 * 180.02562 * 14 12 3 39 39 H 0.96993 * 120.00458 * 5.15267 * 17 15 12 40 40 H 1.07994 * 120.00280 * 359.97438 * 19 18 17 41 41 H 1.08001 * 120.00437 * 180.25260 * 20 19 18 42 42 H 1.08999 * 110.24165 * 316.01997 * 23 22 21 43 43 H 1.08999 * 110.24819 * 77.92409 * 23 22 21 44 44 H 1.09002 * 110.96882 * 92.70432 * 24 23 22 45 45 H 1.09002 * 110.96721 * 216.46196 * 24 23 22 46 46 H 1.09000 * 110.48443 * 143.47518 * 25 24 23 47 47 H 1.08996 * 110.48560 * 265.98882 * 25 24 23 48 48 H 1.08002 * 119.99813 * 179.97438 * 28 21 20 49 49 H 1.08002 * 120.00547 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1677 2.0545 1.1829 5 1 1.8548 3.0853 1.2607 6 6 2.7210 1.4124 2.2821 7 7 2.3498 1.7518 3.4984 8 14 3.9926 0.0664 2.0351 9 1 5.3543 0.6567 2.0849 10 1 3.8537 -0.9490 3.1098 11 1 3.7806 -0.5784 0.7143 12 6 2.3472 2.0419 -1.2655 13 1 2.6095 3.0824 -1.0746 14 6 1.1372 1.9842 -2.2003 15 6 3.5142 1.3397 -1.9105 16 8 3.8464 0.2380 -1.5270 17 7 4.1887 1.9359 -2.9136 18 6 5.2031 1.2416 -3.5851 19 6 5.9797 0.3148 -2.9022 20 6 6.9762 -0.3729 -3.5652 21 6 7.2086 -0.1308 -4.9128 22 7 8.2229 -0.8252 -5.5844 23 6 8.6333 -0.5581 -6.9680 24 6 9.4325 -1.8044 -7.4087 25 6 9.9426 -2.3473 -6.0537 26 6 8.9495 -1.8178 -5.0426 27 8 8.8252 -2.2308 -3.9089 28 6 6.4357 0.8002 -5.5943 29 6 5.4358 1.4841 -4.9326 30 1 -0.3633 0.5818 -0.8470 31 1 -0.3633 -1.0245 -0.0803 32 1 -0.3632 0.4428 0.9274 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 2.7363 1.3028 4.2665 36 1 0.8748 0.9436 -2.3912 37 1 0.2931 2.4920 -1.7338 38 1 1.3820 2.4754 -3.1421 39 1 3.9717 2.8457 -3.1704 40 1 5.8018 0.1297 -1.8532 41 1 7.5775 -1.0967 -3.0351 42 1 7.7569 -0.4279 -7.6029 43 1 9.2637 0.3301 -7.0097 44 1 8.7842 -2.5297 -7.9005 45 1 10.2645 -1.5257 -8.0554 46 1 9.9446 -3.4373 -6.0558 47 1 10.9410 -1.9652 -5.8412 48 1 6.6168 0.9888 -6.6422 49 1 4.8345 2.2079 -5.4627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298251680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:47 Heat of formation + Delta-G solvation = -0.908827 kcal Electronic energy + Delta-G solvation = -30628.473485 eV Core-core repulsion = 26556.898774 eV Total energy + Delta-G solvation = -4071.574711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.25617 -40.04529 -38.25352 -36.87037 -36.00110 -34.53673 -32.68509 -32.05012 -30.94492 -30.80087 -28.81223 -28.14179 -28.03075 -24.38506 -23.71213 -23.30755 -22.49550 -21.75002 -21.10377 -19.94432 -19.37042 -17.85665 -17.50474 -17.09848 -16.79505 -16.16011 -15.75411 -15.25183 -14.94220 -14.63996 -14.40919 -14.15075 -14.10735 -13.86847 -13.78444 -13.71125 -13.30211 -13.24223 -13.05498 -12.64522 -12.46125 -12.40733 -12.21915 -11.96843 -11.94506 -11.78674 -11.57173 -11.45162 -11.43135 -11.14788 -10.68413 -10.61767 -10.35195 -10.14138 -9.80282 -9.74698 -9.51819 -9.29926 -8.95876 -8.72511 -8.41013 -7.47042 -6.73763 -6.06657 -3.45882 1.23804 1.44509 2.35761 2.56302 3.19593 3.42898 3.51379 3.64422 3.84674 3.87680 3.93784 3.95255 4.29805 4.51776 4.65790 4.84420 4.89958 4.95581 4.99091 5.03122 5.18603 5.22325 5.28175 5.34470 5.41296 5.44903 5.48446 5.64423 5.75951 5.79684 5.95255 6.06097 6.09464 6.15323 6.21087 6.35180 6.47631 6.50618 6.53644 6.59725 6.67866 6.75613 6.83224 6.93434 7.09466 7.22749 7.31748 7.77418 7.82360 8.05332 8.38570 8.70637 9.00995 9.70650 10.14664 11.06837 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.002780 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.828268 B =10068.929534 C =11036.992153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.147 3.853 3 N -0.570 5.570 4 C -0.288 4.288 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.881 5.881 8 Si 0.838 3.162 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.223 1.223 12 C 0.153 3.847 13 H 0.093 0.907 14 C -0.152 4.152 15 C 0.485 3.515 16 O -0.505 6.505 17 N -0.683 5.683 18 C 0.139 3.861 19 C -0.098 4.098 20 C -0.134 4.134 21 C 0.132 3.868 22 N -0.557 5.557 23 C 0.096 3.904 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.510 3.490 27 O -0.509 6.509 28 C -0.138 4.138 29 C -0.130 4.130 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.405 0.595 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.124 0.876 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -1.588 -26.696 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 N -0.290 5.290 4 C -0.416 4.416 5 H 0.092 0.908 6 C -0.147 4.147 7 N -0.518 5.518 8 Si 0.664 3.336 9 H -0.221 1.221 10 H -0.226 1.226 11 H -0.146 1.146 12 C 0.041 3.959 13 H 0.111 0.889 14 C -0.211 4.211 15 C 0.272 3.728 16 O -0.377 6.377 17 N -0.330 5.330 18 C 0.043 3.957 19 C -0.119 4.119 20 C -0.154 4.154 21 C 0.039 3.961 22 N -0.282 5.282 23 C -0.027 4.027 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.299 3.701 27 O -0.384 6.384 28 C -0.159 4.159 29 C -0.151 4.151 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.240 0.760 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.124 0.876 47 H 0.126 0.874 48 H 0.142 0.858 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.007 -2.649 -25.507 27.907 hybrid contribution 0.830 -0.154 -0.147 0.857 sum 11.837 -2.802 -25.654 28.392 Atomic orbital electron populations 1.22389 0.99455 0.98975 1.01877 1.21076 0.91287 0.85582 0.99826 1.44022 1.72275 1.12095 1.00640 1.18604 1.38285 0.98905 0.85818 0.90780 1.25585 0.96687 0.97519 0.94885 1.70002 1.40318 1.43231 0.98272 0.87501 0.83144 0.82735 0.80228 1.22060 1.22612 1.14580 1.20781 0.89581 0.97335 0.88202 0.88899 1.22213 0.98833 1.02146 0.97922 1.23484 0.84614 0.87047 0.77642 1.90649 1.66922 1.20522 1.59644 1.44218 1.35180 1.17477 1.36138 1.17972 0.90336 0.96343 0.91087 1.21444 0.92799 0.95908 1.01765 1.21553 0.99533 1.01767 0.92547 1.17712 0.90802 0.95623 0.91963 1.45758 1.33710 1.34366 1.14365 1.22226 0.99984 0.98917 0.81562 1.22616 1.00629 0.96898 0.96753 1.22337 0.99473 1.03553 0.93967 1.21077 0.81806 0.79111 0.88076 1.90678 1.68292 1.60526 1.18916 1.20414 0.97523 0.98613 0.99388 1.20621 0.99742 1.02392 0.92339 0.93479 0.94688 0.92415 0.93501 0.93156 0.92631 0.92476 0.91195 0.93332 0.75956 0.83420 0.82928 0.89576 0.90191 0.89617 0.88667 0.87564 0.87431 0.85826 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 9.99 37.16 0.37 -2.97 16 2 C 0.15 3.37 3.62 -4.04 -0.01 3.35 16 3 N -0.57 -13.33 1.70 -166.98 -0.28 -13.61 16 4 C -0.29 -7.90 9.65 -15.06 -0.15 -8.04 16 5 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 6 C 0.06 1.67 5.11 -17.43 -0.09 1.58 16 7 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 8 Si 0.84 22.77 26.37 -169.99 -4.48 18.29 16 9 H -0.29 -8.23 7.11 56.52 0.40 -7.83 16 10 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 11 H -0.22 -6.02 4.43 56.52 0.25 -5.77 16 12 C 0.15 2.87 3.11 -69.08 -0.21 2.66 16 13 H 0.09 1.65 7.90 -51.93 -0.41 1.24 16 14 C -0.15 -2.30 7.98 37.16 0.30 -2.00 16 15 C 0.49 9.18 6.85 -10.98 -0.08 9.10 16 16 O -0.51 -11.50 10.29 5.55 0.06 -11.45 16 17 N -0.68 -10.13 5.35 -9.82 -0.05 -10.18 16 18 C 0.14 2.12 6.35 -83.62 -0.53 1.58 16 19 C -0.10 -1.75 8.71 -39.42 -0.34 -2.10 16 20 C -0.13 -2.22 9.28 -39.42 -0.37 -2.58 16 21 C 0.13 1.77 6.60 -83.62 -0.55 1.22 16 22 N -0.56 -6.01 3.14 -112.22 -0.35 -6.36 16 23 C 0.10 0.54 6.51 -3.12 -0.02 0.52 16 24 C -0.13 -0.49 7.18 -25.10 -0.18 -0.67 16 25 C -0.15 -0.96 6.86 -26.74 -0.18 -1.14 16 26 C 0.51 6.04 7.92 -10.86 -0.09 5.95 16 27 O -0.51 -8.33 14.81 5.54 0.08 -8.25 16 28 C -0.14 -1.54 9.41 -39.42 -0.37 -1.91 16 29 C -0.13 -1.54 9.95 -39.42 -0.39 -1.93 16 30 H 0.05 0.84 5.81 -51.93 -0.30 0.54 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.18 4.57 -51.93 -0.24 0.95 16 34 H 0.05 1.14 6.24 -51.92 -0.32 0.81 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.06 0.91 6.63 -51.93 -0.34 0.57 16 37 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.41 4.49 8.82 -40.82 -0.36 4.13 16 40 H 0.15 3.10 6.02 -52.49 -0.32 2.79 16 41 H 0.15 2.78 5.24 -52.49 -0.28 2.50 16 42 H 0.09 0.39 7.23 -51.93 -0.38 0.01 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.12 0.96 6.74 -52.49 -0.35 0.61 16 49 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -36.55 382.01 -8.62 -45.17 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.22 Total: 4.13 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.90 Total: 2.63 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.09 Total: -56.27 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.14 Total: -19.70 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.48 Total: 18.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.55 -8.62 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298251680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.261 kcal (2) G-P(sol) polarization free energy of solvation -36.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds