Wall clock time and date at job start Wed Apr 1 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47285 * 2 1 4 4 C 1.36929 * 119.99916 * 85.95256 * 3 2 1 5 5 H 1.08004 * 119.99995 * 222.46526 * 4 3 2 6 6 C 1.38810 * 120.00372 * 42.46154 * 4 3 2 7 7 N 1.31620 * 120.00217 * 210.77950 * 6 4 3 8 8 Si 1.86803 * 119.99937 * 30.78015 * 6 4 3 9 9 H 1.48492 * 109.47347 * 92.91448 * 8 6 4 10 10 H 1.48502 * 109.46959 * 212.91703 * 8 6 4 11 11 H 1.48505 * 109.46725 * 332.91703 * 8 6 4 12 12 C 1.46500 * 120.00250 * 265.94505 * 3 2 1 13 13 H 1.08992 * 109.47029 * 175.21026 * 12 3 2 14 14 C 1.53006 * 109.46918 * 55.21391 * 12 3 2 15 15 C 1.50701 * 109.47352 * 295.21675 * 12 3 2 16 16 O 1.21291 * 119.99772 * 15.17260 * 15 12 3 17 17 N 1.34777 * 119.99632 * 195.17334 * 15 12 3 18 18 C 1.40079 * 119.99511 * 185.14496 * 17 15 12 19 19 C 1.38866 * 120.00101 * 327.32876 * 18 17 15 20 20 C 1.38046 * 119.99689 * 179.76312 * 19 18 17 21 21 C 1.38876 * 120.00015 * 0.47941 * 20 19 18 22 22 N 1.40074 * 120.00074 * 179.76798 * 21 20 19 23 23 C 1.46765 * 124.35189 * 185.93534 * 22 21 20 24 24 C 1.54478 * 105.47219 * 197.01622 * 23 22 21 25 25 C 1.54626 * 101.76604 * 334.57793 * 24 23 22 26 26 C 1.34418 * 124.34789 * 5.63044 * 22 21 20 27 27 O 1.21297 * 124.94489 * 359.57723 * 26 22 21 28 28 C 1.38868 * 119.99814 * 359.79806 * 21 20 19 29 29 C 1.38042 * 120.00360 * 359.94845 * 28 21 20 30 30 H 1.08995 * 109.47180 * 55.51499 * 1 2 3 31 31 H 1.08999 * 109.47139 * 175.51936 * 1 2 3 32 32 H 1.09000 * 109.46625 * 295.52116 * 1 2 3 33 33 H 1.09002 * 109.47410 * 120.00638 * 2 1 3 34 34 H 1.09007 * 109.46539 * 240.00228 * 2 1 3 35 35 H 0.97005 * 119.99787 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47079 * 300.00071 * 14 12 3 37 37 H 1.08999 * 109.47195 * 59.99526 * 14 12 3 38 38 H 1.08997 * 109.47122 * 180.02562 * 14 12 3 39 39 H 0.96993 * 120.00458 * 5.15267 * 17 15 12 40 40 H 1.07994 * 120.00280 * 359.97438 * 19 18 17 41 41 H 1.08001 * 120.00437 * 180.25260 * 20 19 18 42 42 H 1.08999 * 110.24165 * 316.01997 * 23 22 21 43 43 H 1.08999 * 110.24819 * 77.92409 * 23 22 21 44 44 H 1.09002 * 110.96882 * 92.70432 * 24 23 22 45 45 H 1.09002 * 110.96721 * 216.46196 * 24 23 22 46 46 H 1.09000 * 110.48443 * 143.47518 * 25 24 23 47 47 H 1.08996 * 110.48560 * 265.98882 * 25 24 23 48 48 H 1.08002 * 119.99813 * 179.97438 * 28 21 20 49 49 H 1.08002 * 120.00547 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1677 2.0545 1.1829 5 1 1.8548 3.0853 1.2607 6 6 2.7210 1.4124 2.2821 7 7 2.3498 1.7518 3.4984 8 14 3.9926 0.0664 2.0351 9 1 5.3543 0.6567 2.0849 10 1 3.8537 -0.9490 3.1098 11 1 3.7806 -0.5784 0.7143 12 6 2.3472 2.0419 -1.2655 13 1 2.6095 3.0824 -1.0746 14 6 1.1372 1.9842 -2.2003 15 6 3.5142 1.3397 -1.9105 16 8 3.8464 0.2380 -1.5270 17 7 4.1887 1.9359 -2.9136 18 6 5.2031 1.2416 -3.5851 19 6 5.9797 0.3148 -2.9022 20 6 6.9762 -0.3729 -3.5652 21 6 7.2086 -0.1308 -4.9128 22 7 8.2229 -0.8252 -5.5844 23 6 8.6333 -0.5581 -6.9680 24 6 9.4325 -1.8044 -7.4087 25 6 9.9426 -2.3473 -6.0537 26 6 8.9495 -1.8178 -5.0426 27 8 8.8252 -2.2308 -3.9089 28 6 6.4357 0.8002 -5.5943 29 6 5.4358 1.4841 -4.9326 30 1 -0.3633 0.5818 -0.8470 31 1 -0.3633 -1.0245 -0.0803 32 1 -0.3632 0.4428 0.9274 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 2.7363 1.3028 4.2665 36 1 0.8748 0.9436 -2.3912 37 1 0.2931 2.4920 -1.7338 38 1 1.3820 2.4754 -3.1421 39 1 3.9717 2.8457 -3.1704 40 1 5.8018 0.1297 -1.8532 41 1 7.5775 -1.0967 -3.0351 42 1 7.7569 -0.4279 -7.6029 43 1 9.2637 0.3301 -7.0097 44 1 8.7842 -2.5297 -7.9005 45 1 10.2645 -1.5257 -8.0554 46 1 9.9446 -3.4373 -6.0558 47 1 10.9410 -1.9652 -5.8412 48 1 6.6168 0.9888 -6.6422 49 1 4.8345 2.2079 -5.4627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298251680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:45 Heat of formation + Delta-G solvation = -26.331059 kcal Electronic energy + Delta-G solvation = -30629.575876 eV Core-core repulsion = 26556.898774 eV Total energy + Delta-G solvation = -4072.677102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.12646 -41.35784 -39.48830 -37.90474 -37.53517 -35.79879 -34.26327 -33.46939 -32.35039 -31.99874 -30.59426 -29.15250 -28.63292 -26.04765 -25.11741 -24.34265 -23.85900 -22.93933 -22.26115 -20.87270 -20.80490 -19.01582 -18.74415 -18.47371 -17.81388 -17.60083 -17.23947 -16.59544 -16.29627 -16.02348 -15.68256 -15.41034 -15.21539 -14.99750 -14.94426 -14.66424 -14.51580 -14.48841 -14.33058 -14.05003 -13.84114 -13.68405 -13.52942 -13.39622 -13.22922 -13.10537 -12.74873 -12.70665 -12.49584 -12.34407 -12.23841 -12.13449 -11.98156 -11.68304 -11.53685 -11.32351 -10.75166 -10.64054 -10.52724 -10.38865 -9.97913 -8.69140 -8.55198 -8.34571 -5.65095 0.13341 0.35558 1.24208 1.34653 1.42606 1.64920 1.78837 1.82523 2.18176 2.41181 2.82606 2.92912 3.26559 3.37219 3.54426 3.85961 3.94286 4.01008 4.03138 4.10862 4.33263 4.36453 4.40294 4.40435 4.43882 4.55683 4.61467 4.64440 4.79810 4.80696 4.82373 4.89597 4.94368 5.02663 5.07079 5.10293 5.11041 5.15377 5.18803 5.29076 5.35628 5.40816 5.50636 5.60611 5.65647 5.88538 6.06080 6.08791 6.16927 6.57249 6.95284 6.97897 7.33724 7.60066 8.07001 8.83974 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.002780 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.828268 B =10068.929534 C =11036.992153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.882 3.118 9 H -0.312 1.312 10 H -0.306 1.306 11 H -0.225 1.225 12 C 0.148 3.852 13 H 0.104 0.896 14 C -0.141 4.141 15 C 0.484 3.516 16 O -0.551 6.551 17 N -0.663 5.663 18 C 0.118 3.882 19 C -0.127 4.127 20 C -0.165 4.165 21 C 0.133 3.867 22 N -0.560 5.560 23 C 0.084 3.916 24 C -0.116 4.116 25 C -0.146 4.146 26 C 0.489 3.511 27 O -0.572 6.572 28 C -0.121 4.121 29 C -0.105 4.105 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.014 0.986 34 H 0.052 0.948 35 H 0.262 0.738 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.427 0.573 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.112 0.888 47 H 0.124 0.876 48 H 0.175 0.825 49 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 -0.051 -33.220 35.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 N -0.306 5.306 4 C -0.388 4.388 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.563 5.563 8 Si 0.710 3.290 9 H -0.241 1.241 10 H -0.234 1.234 11 H -0.147 1.147 12 C 0.037 3.963 13 H 0.122 0.878 14 C -0.199 4.199 15 C 0.272 3.728 16 O -0.427 6.427 17 N -0.310 5.310 18 C 0.023 3.977 19 C -0.148 4.148 20 C -0.185 4.185 21 C 0.039 3.961 22 N -0.284 5.284 23 C -0.036 4.036 24 C -0.154 4.154 25 C -0.185 4.185 26 C 0.280 3.720 27 O -0.452 6.452 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.266 0.734 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.148 0.852 46 H 0.130 0.870 47 H 0.142 0.858 48 H 0.192 0.808 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.142 -1.072 -32.160 34.052 hybrid contribution 0.881 -0.604 1.660 1.975 sum 12.023 -1.676 -30.499 32.827 Atomic orbital electron populations 1.22248 0.96908 1.00737 1.01568 1.21017 0.93246 0.85142 0.98340 1.44064 1.73196 1.12097 1.01198 1.18603 1.35016 0.98005 0.87197 0.92345 1.25931 0.98403 0.98991 0.95142 1.70056 1.42303 1.45162 0.98741 0.86833 0.81188 0.81383 0.79588 1.24146 1.23394 1.14724 1.20955 0.91341 0.97005 0.86957 0.87798 1.22108 0.96726 1.02320 0.98767 1.23188 0.84753 0.86506 0.78385 1.90664 1.68089 1.22646 1.61309 1.43750 1.34220 1.18168 1.34907 1.18051 0.90459 0.96585 0.92629 1.21108 0.95083 0.98521 1.00071 1.21330 1.00027 1.02403 0.94778 1.17886 0.91562 0.95836 0.90825 1.46118 1.32507 1.33454 1.16283 1.22713 1.01589 1.00672 0.78582 1.22691 1.01504 0.95919 0.95250 1.22413 0.98491 1.03872 0.93763 1.22275 0.82504 0.79016 0.88157 1.90651 1.70156 1.62407 1.21938 1.20946 0.95595 0.96274 1.01334 1.21087 0.99264 1.01857 0.90367 0.91129 0.92404 0.94767 0.96740 0.92958 0.92879 0.93191 0.91002 0.88968 0.73418 0.88220 0.86145 0.87344 0.88143 0.88810 0.85205 0.87013 0.85760 0.80791 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.06 9.99 71.98 0.72 -5.34 16 2 C 0.15 6.83 3.62 86.38 0.31 7.14 16 3 N -0.58 -27.49 1.70 -682.20 -1.16 -28.65 16 4 C -0.26 -14.49 9.65 84.03 0.81 -13.68 16 5 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 6 C 0.02 0.92 5.11 84.86 0.43 1.35 16 7 N -0.92 -58.50 13.97 21.65 0.30 -58.20 16 8 Si 0.88 50.28 26.37 68.60 1.81 52.09 16 9 H -0.31 -18.52 7.11 99.48 0.71 -17.81 16 10 H -0.31 -17.57 7.11 99.48 0.71 -16.87 16 11 H -0.22 -12.79 4.43 99.48 0.44 -12.35 16 12 C 0.15 5.35 3.11 44.25 0.14 5.49 16 13 H 0.10 3.50 7.90 -2.39 -0.02 3.49 16 14 C -0.14 -3.78 7.98 71.98 0.57 -3.20 16 15 C 0.48 18.16 6.85 87.66 0.60 18.76 16 16 O -0.55 -26.13 10.29 -3.06 -0.03 -26.17 16 17 N -0.66 -18.40 5.35 -303.38 -1.62 -20.02 16 18 C 0.12 3.46 6.35 38.13 0.24 3.70 16 19 C -0.13 -4.82 8.71 22.37 0.19 -4.63 16 20 C -0.16 -5.86 9.28 22.38 0.21 -5.66 16 21 C 0.13 3.40 6.60 38.13 0.25 3.65 16 22 N -0.56 -11.02 3.14 -627.53 -1.97 -12.99 16 23 C 0.08 0.54 6.51 86.83 0.57 1.11 16 24 C -0.12 -0.31 7.18 31.65 0.23 -0.08 16 25 C -0.15 -1.50 6.86 30.59 0.21 -1.29 16 26 C 0.49 11.64 7.92 87.90 0.70 12.33 16 27 O -0.57 -20.49 14.81 -3.08 -0.05 -20.53 16 28 C -0.12 -2.12 9.41 22.37 0.21 -1.91 16 29 C -0.11 -2.01 9.95 22.38 0.22 -1.78 16 30 H 0.07 2.39 5.81 -2.39 -0.01 2.37 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.01 0.75 4.57 -2.39 -0.01 0.74 16 34 H 0.05 2.40 6.24 -2.38 -0.01 2.38 16 35 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 36 H 0.05 1.44 6.63 -2.38 -0.02 1.42 16 37 H 0.07 1.94 7.89 -2.39 -0.02 1.92 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.43 7.86 8.82 -92.71 -0.82 7.04 16 40 H 0.10 4.70 6.02 -2.91 -0.02 4.69 16 41 H 0.12 5.02 5.24 -2.91 -0.02 5.01 16 42 H 0.11 0.26 7.23 -2.39 -0.02 0.25 16 43 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.13 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.17 1.36 6.74 -2.91 -0.02 1.34 16 49 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -91.32 382.01 3.80 -87.52 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -0.10 Total: 10.98 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.62 Total: 15.97 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -4.45 Total: -119.86 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.08 Total: -46.70 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 1.81 Total: 52.09 kcal Total: -91.32 3.80 -87.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298251680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.187 kcal (2) G-P(sol) polarization free energy of solvation -91.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds