Wall clock time and date at job start Wed Apr 1 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47130 * 2 1 4 4 C 1.36942 * 119.99807 * 274.31482 * 3 2 1 5 5 H 1.07998 * 119.99808 * 323.13817 * 4 3 2 6 6 C 1.38808 * 119.99659 * 143.14001 * 4 3 2 7 7 N 1.31618 * 120.00449 * 352.70048 * 6 4 3 8 8 Si 1.86810 * 119.99839 * 172.70351 * 6 4 3 9 9 H 1.48501 * 109.46916 * 89.99795 * 8 6 4 10 10 H 1.48497 * 109.46713 * 209.99807 * 8 6 4 11 11 H 1.48493 * 109.47050 * 329.99787 * 8 6 4 12 12 C 1.46496 * 120.00108 * 94.31507 * 3 2 1 13 13 H 1.09005 * 109.47328 * 179.35902 * 12 3 2 14 14 C 1.52998 * 109.46981 * 299.35974 * 12 3 2 15 15 C 1.50701 * 109.47268 * 59.35816 * 12 3 2 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 12 3 17 17 N 1.34775 * 119.99829 * 179.97438 * 15 12 3 18 18 C 1.40080 * 119.99488 * 184.55123 * 17 15 12 19 19 C 1.38875 * 119.99730 * 212.98791 * 18 17 15 20 20 C 1.38044 * 119.99950 * 180.02562 * 19 18 17 21 21 C 1.38867 * 119.99583 * 0.03034 * 20 19 18 22 22 N 1.40081 * 119.99660 * 179.97438 * 21 20 19 23 23 C 1.46761 * 124.34947 * 174.73322 * 22 21 20 24 24 C 1.54479 * 105.47019 * 196.99022 * 23 22 21 25 25 C 1.54780 * 101.69837 * 334.39191 * 24 23 22 26 26 C 1.34415 * 124.34893 * 354.70173 * 22 21 20 27 27 O 1.21301 * 124.94469 * 359.58534 * 26 22 21 28 28 C 1.38868 * 120.00368 * 0.22380 * 21 20 19 29 29 C 1.38036 * 120.00108 * 359.49532 * 28 21 20 30 30 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47409 * 300.00281 * 1 2 3 32 32 H 1.09005 * 109.46944 * 60.00715 * 1 2 3 33 33 H 1.09005 * 109.47560 * 240.00221 * 2 1 3 34 34 H 1.08998 * 109.47150 * 119.99925 * 2 1 3 35 35 H 0.97004 * 120.00586 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.47455 * 59.99855 * 14 12 3 37 37 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47211 * 299.99549 * 14 12 3 39 39 H 0.96992 * 120.00246 * 4.55507 * 17 15 12 40 40 H 1.08005 * 119.99585 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.99736 * 179.97438 * 20 19 18 42 42 H 1.09001 * 110.24405 * 315.98851 * 23 22 21 43 43 H 1.08996 * 110.24453 * 77.90326 * 23 22 21 44 44 H 1.09001 * 110.96899 * 92.70596 * 24 23 22 45 45 H 1.09002 * 110.97022 * 216.46034 * 24 23 22 46 46 H 1.09004 * 110.61575 * 266.40317 * 25 24 23 47 47 H 1.08999 * 110.43311 * 143.70902 * 25 24 23 48 48 H 1.08000 * 119.99883 * 179.74511 * 28 21 20 49 49 H 1.07994 * 120.00392 * 180.23337 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1624 2.0565 -1.1826 5 1 2.5041 1.5346 -2.0642 6 6 1.8692 3.4117 -1.2481 7 7 1.3179 4.0164 -0.2173 8 14 2.2571 4.3773 -2.7996 9 1 1.0885 4.3336 -3.7149 10 1 2.5545 5.7878 -2.4432 11 1 3.4366 3.7778 -3.4738 12 6 2.3525 2.0400 1.2651 13 1 2.7064 3.0516 1.0657 14 6 1.1078 2.1009 2.1527 15 6 3.4329 1.2593 1.9680 16 8 3.8802 0.2519 1.4617 17 7 3.9029 1.6810 3.1587 18 6 4.9720 1.0106 3.7668 19 6 5.0412 0.9262 5.1513 20 6 6.0950 0.2659 5.7507 21 6 7.0860 -0.3133 4.9692 22 7 8.1556 -0.9828 5.5775 23 6 9.1926 -1.7218 4.8477 24 6 9.8726 -2.6253 5.9001 25 6 9.6061 -1.8401 7.2071 26 6 8.3644 -1.0305 6.9045 27 8 7.6624 -0.4977 7.7379 28 6 7.0196 -0.2243 3.5850 29 6 5.9629 0.4309 2.9854 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.1127 4.9634 -0.2631 36 1 0.7539 1.0895 2.3521 37 1 1.3563 2.5915 3.0938 38 1 0.3263 2.6657 1.6443 39 1 3.5010 2.4487 3.5944 40 1 4.2706 1.3771 5.7590 41 1 6.1490 0.2006 6.8274 42 1 8.7413 -2.3298 4.0636 43 1 9.9170 -1.0300 4.4180 44 1 9.4050 -3.6095 5.9299 45 1 10.9425 -2.7092 5.7095 46 1 10.4440 -1.1819 7.4370 47 1 9.4217 -2.5272 8.0329 48 1 7.7926 -0.6713 2.9774 49 1 5.9092 0.4968 1.9088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298251681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:54 Heat of formation + Delta-G solvation = -8.873427 kcal Electronic energy + Delta-G solvation = -30396.830394 eV Core-core repulsion = 26324.910312 eV Total energy + Delta-G solvation = -4071.920082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21775 -39.88944 -38.11788 -36.83558 -35.81456 -34.41956 -32.53345 -31.82577 -30.85950 -30.64714 -28.40196 -28.03578 -27.84615 -24.27589 -23.67833 -23.42402 -22.32048 -21.46640 -20.84525 -19.91725 -19.21327 -17.80092 -17.55125 -17.09103 -16.65732 -16.31076 -15.59447 -14.84611 -14.67830 -14.53040 -14.25493 -14.02387 -14.00805 -13.91354 -13.71439 -13.53586 -13.33627 -13.13709 -12.97861 -12.60400 -12.44914 -12.29478 -11.91477 -11.87252 -11.56706 -11.49063 -11.34123 -11.27797 -11.12964 -10.92377 -10.74716 -10.60939 -10.32684 -10.18086 -9.85942 -9.78808 -9.60610 -9.27135 -8.92403 -8.70808 -8.56533 -7.37542 -6.60604 -5.90352 -3.42230 1.27716 1.54244 2.37173 2.60432 3.31869 3.38263 3.39937 3.42925 3.63814 3.87900 3.97871 4.04730 4.35713 4.43714 4.54572 4.91795 5.03607 5.04332 5.17358 5.22383 5.28387 5.33676 5.40164 5.43901 5.49212 5.51759 5.54422 5.79195 5.98767 6.22343 6.23227 6.27054 6.30054 6.43904 6.49522 6.54457 6.60816 6.62023 6.67527 6.80555 6.87354 6.96902 7.08309 7.19098 7.31502 7.38861 7.43641 7.76926 7.83044 7.95383 8.45989 8.84816 9.17042 9.74182 10.32342 11.17427 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.002325 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.461347 B =12041.938432 C =12260.514305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 N -0.563 5.563 4 C -0.250 4.250 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.902 5.902 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.127 0.873 14 C -0.141 4.141 15 C 0.488 3.512 16 O -0.523 6.523 17 N -0.684 5.684 18 C 0.144 3.856 19 C -0.129 4.129 20 C -0.134 4.134 21 C 0.128 3.872 22 N -0.555 5.555 23 C 0.093 3.907 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.512 3.488 27 O -0.516 6.516 28 C -0.133 4.133 29 C -0.098 4.098 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.256 0.744 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.407 0.593 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.124 0.876 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.630 -9.266 13.279 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 N -0.282 5.282 4 C -0.380 4.380 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.546 5.546 8 Si 0.735 3.265 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.065 3.935 13 H 0.144 0.856 14 C -0.200 4.200 15 C 0.277 3.723 16 O -0.397 6.397 17 N -0.331 5.331 18 C 0.048 3.952 19 C -0.151 4.151 20 C -0.154 4.154 21 C 0.035 3.965 22 N -0.279 5.279 23 C -0.029 4.029 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.301 3.699 27 O -0.392 6.392 28 C -0.154 4.154 29 C -0.119 4.119 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.243 0.757 40 H 0.145 0.855 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.142 0.858 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.465 -9.524 13.235 21.797 hybrid contribution -0.017 0.957 -0.655 1.160 sum 14.448 -8.567 12.580 20.986 Atomic orbital electron populations 1.22421 0.99885 0.98407 1.01967 1.20800 0.91175 0.86673 0.99103 1.43475 1.72803 1.10384 1.01518 1.19165 1.38147 0.92093 0.88555 0.91867 1.25278 0.97823 0.98394 0.97450 1.69843 1.44567 1.10391 1.29834 0.86252 0.78259 0.79096 0.82910 1.21204 1.21543 1.20410 1.20338 0.89750 0.97537 0.85893 0.85603 1.22162 1.00338 0.99974 0.97490 1.23699 0.84130 0.85600 0.78906 1.90564 1.59529 1.25184 1.64450 1.44261 1.33153 1.32995 1.22683 1.17983 0.88852 0.96879 0.91465 1.20820 0.99383 1.02079 0.92790 1.21316 0.93273 0.99146 1.01707 1.17679 0.88774 0.98111 0.91959 1.45747 1.24738 1.49964 1.07422 1.22258 0.89907 0.94948 0.95780 1.22649 1.02281 0.98813 0.93153 1.22366 0.97049 1.00021 0.99878 1.21051 0.86645 0.80630 0.81573 1.90632 1.51103 1.47192 1.50278 1.20606 0.99927 1.03083 0.91815 1.21039 0.91539 0.98147 1.01142 0.95197 0.93280 0.92877 0.94376 0.93674 0.93376 0.94668 0.94865 0.89396 0.75693 0.85455 0.82912 0.89395 0.90117 0.89573 0.88672 0.87419 0.87651 0.85838 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 10.00 37.16 0.37 -3.04 16 2 C 0.15 3.34 5.16 -4.04 -0.02 3.32 16 3 N -0.56 -13.84 2.15 -166.98 -0.36 -14.19 16 4 C -0.25 -6.66 9.54 -15.06 -0.14 -6.81 16 5 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 6 C 0.01 0.24 5.08 -17.43 -0.09 0.16 16 7 N -0.90 -23.75 10.16 55.49 0.56 -23.19 16 8 Si 0.91 20.98 29.56 -169.99 -5.02 15.96 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.18 3.92 2.17 -69.08 -0.15 3.77 16 13 H 0.13 3.09 6.02 -51.93 -0.31 2.77 16 14 C -0.14 -2.79 7.98 37.16 0.30 -2.50 16 15 C 0.49 10.06 6.61 -10.99 -0.07 9.99 16 16 O -0.52 -12.06 12.16 5.55 0.07 -11.99 16 17 N -0.68 -11.52 5.27 -9.82 -0.05 -11.57 16 18 C 0.14 2.36 6.29 -83.62 -0.53 1.83 16 19 C -0.13 -1.88 9.95 -39.42 -0.39 -2.27 16 20 C -0.13 -1.96 9.28 -39.42 -0.37 -2.33 16 21 C 0.13 1.75 6.60 -83.62 -0.55 1.20 16 22 N -0.55 -6.08 3.14 -112.22 -0.35 -6.43 16 23 C 0.09 0.62 6.27 -3.12 -0.02 0.60 16 24 C -0.13 -0.54 7.19 -25.02 -0.18 -0.72 16 25 C -0.15 -0.92 6.87 -26.66 -0.18 -1.10 16 26 C 0.51 5.72 7.92 -10.86 -0.09 5.64 16 27 O -0.52 -7.63 14.81 5.54 0.08 -7.55 16 28 C -0.13 -1.84 9.40 -39.42 -0.37 -2.21 16 29 C -0.10 -1.62 8.65 -39.42 -0.34 -1.96 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.00 5.91 -51.93 -0.31 0.69 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.04 1.02 6.35 -51.93 -0.33 0.69 16 35 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.03 0.68 6.48 -51.93 -0.34 0.34 16 37 H 0.03 0.55 7.47 -51.93 -0.39 0.16 16 38 H 0.09 1.97 7.30 -51.93 -0.38 1.59 16 39 H 0.41 5.81 8.11 -40.82 -0.33 5.48 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.15 2.32 5.24 -52.49 -0.28 2.04 16 42 H 0.09 0.55 7.69 -51.93 -0.40 0.15 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.12 1.38 7.00 -52.49 -0.37 1.02 16 49 H 0.14 2.63 6.36 -52.49 -0.33 2.29 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -31.98 386.74 -9.18 -41.16 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.11 Total: 8.42 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.82 Total: 3.57 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.20 Total: -55.39 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.15 Total: -19.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.98 -9.18 -41.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298251681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.285 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds