Wall clock time and date at job start Wed Apr 1 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47130 * 2 1 4 4 C 1.36942 * 119.99807 * 274.31482 * 3 2 1 5 5 H 1.07998 * 119.99808 * 323.13817 * 4 3 2 6 6 C 1.38808 * 119.99659 * 143.14001 * 4 3 2 7 7 N 1.31618 * 120.00449 * 352.70048 * 6 4 3 8 8 Si 1.86810 * 119.99839 * 172.70351 * 6 4 3 9 9 H 1.48501 * 109.46916 * 89.99795 * 8 6 4 10 10 H 1.48497 * 109.46713 * 209.99807 * 8 6 4 11 11 H 1.48493 * 109.47050 * 329.99787 * 8 6 4 12 12 C 1.46496 * 120.00108 * 94.31507 * 3 2 1 13 13 H 1.09005 * 109.47328 * 179.35902 * 12 3 2 14 14 C 1.52998 * 109.46981 * 299.35974 * 12 3 2 15 15 C 1.50701 * 109.47268 * 59.35816 * 12 3 2 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 12 3 17 17 N 1.34775 * 119.99829 * 179.97438 * 15 12 3 18 18 C 1.40080 * 119.99488 * 184.55123 * 17 15 12 19 19 C 1.38875 * 119.99730 * 212.98791 * 18 17 15 20 20 C 1.38044 * 119.99950 * 180.02562 * 19 18 17 21 21 C 1.38867 * 119.99583 * 0.03034 * 20 19 18 22 22 N 1.40081 * 119.99660 * 179.97438 * 21 20 19 23 23 C 1.46761 * 124.34947 * 174.73322 * 22 21 20 24 24 C 1.54479 * 105.47019 * 196.99022 * 23 22 21 25 25 C 1.54780 * 101.69837 * 334.39191 * 24 23 22 26 26 C 1.34415 * 124.34893 * 354.70173 * 22 21 20 27 27 O 1.21301 * 124.94469 * 359.58534 * 26 22 21 28 28 C 1.38868 * 120.00368 * 0.22380 * 21 20 19 29 29 C 1.38036 * 120.00108 * 359.49532 * 28 21 20 30 30 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47409 * 300.00281 * 1 2 3 32 32 H 1.09005 * 109.46944 * 60.00715 * 1 2 3 33 33 H 1.09005 * 109.47560 * 240.00221 * 2 1 3 34 34 H 1.08998 * 109.47150 * 119.99925 * 2 1 3 35 35 H 0.97004 * 120.00586 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.47455 * 59.99855 * 14 12 3 37 37 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47211 * 299.99549 * 14 12 3 39 39 H 0.96992 * 120.00246 * 4.55507 * 17 15 12 40 40 H 1.08005 * 119.99585 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.99736 * 179.97438 * 20 19 18 42 42 H 1.09001 * 110.24405 * 315.98851 * 23 22 21 43 43 H 1.08996 * 110.24453 * 77.90326 * 23 22 21 44 44 H 1.09001 * 110.96899 * 92.70596 * 24 23 22 45 45 H 1.09002 * 110.97022 * 216.46034 * 24 23 22 46 46 H 1.09004 * 110.61575 * 266.40317 * 25 24 23 47 47 H 1.08999 * 110.43311 * 143.70902 * 25 24 23 48 48 H 1.08000 * 119.99883 * 179.74511 * 28 21 20 49 49 H 1.07994 * 120.00392 * 180.23337 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1624 2.0565 -1.1826 5 1 2.5041 1.5346 -2.0642 6 6 1.8692 3.4117 -1.2481 7 7 1.3179 4.0164 -0.2173 8 14 2.2571 4.3773 -2.7996 9 1 1.0885 4.3336 -3.7149 10 1 2.5545 5.7878 -2.4432 11 1 3.4366 3.7778 -3.4738 12 6 2.3525 2.0400 1.2651 13 1 2.7064 3.0516 1.0657 14 6 1.1078 2.1009 2.1527 15 6 3.4329 1.2593 1.9680 16 8 3.8802 0.2519 1.4617 17 7 3.9029 1.6810 3.1587 18 6 4.9720 1.0106 3.7668 19 6 5.0412 0.9262 5.1513 20 6 6.0950 0.2659 5.7507 21 6 7.0860 -0.3133 4.9692 22 7 8.1556 -0.9828 5.5775 23 6 9.1926 -1.7218 4.8477 24 6 9.8726 -2.6253 5.9001 25 6 9.6061 -1.8401 7.2071 26 6 8.3644 -1.0305 6.9045 27 8 7.6624 -0.4977 7.7379 28 6 7.0196 -0.2243 3.5850 29 6 5.9629 0.4309 2.9854 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.1127 4.9634 -0.2631 36 1 0.7539 1.0895 2.3521 37 1 1.3563 2.5915 3.0938 38 1 0.3263 2.6657 1.6443 39 1 3.5010 2.4487 3.5944 40 1 4.2706 1.3771 5.7590 41 1 6.1490 0.2006 6.8274 42 1 8.7413 -2.3298 4.0636 43 1 9.9170 -1.0300 4.4180 44 1 9.4050 -3.6095 5.9299 45 1 10.9425 -2.7092 5.7095 46 1 10.4440 -1.1819 7.4370 47 1 9.4217 -2.5272 8.0329 48 1 7.7926 -0.6713 2.9774 49 1 5.9092 0.4968 1.9088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298251681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:52 Heat of formation + Delta-G solvation = -27.379848 kcal Electronic energy + Delta-G solvation = -30397.632892 eV Core-core repulsion = 26324.910312 eV Total energy + Delta-G solvation = -4072.722581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.10466 -41.29792 -39.42629 -37.78542 -37.44305 -35.76571 -33.79149 -33.52843 -32.19868 -32.02173 -30.17667 -29.03954 -28.62358 -26.13862 -25.13052 -24.35261 -23.70918 -22.50798 -22.23044 -21.05280 -20.65006 -19.19955 -18.70548 -18.26098 -17.93108 -17.60761 -16.68226 -16.51965 -16.12688 -15.85592 -15.62677 -15.48580 -15.06120 -15.01005 -14.75972 -14.64207 -14.54875 -14.33687 -14.12337 -14.03259 -13.69838 -13.53955 -13.31826 -13.16743 -13.05858 -12.96286 -12.75112 -12.55169 -12.45045 -12.32127 -12.15578 -12.11863 -11.98559 -11.66128 -11.56994 -11.35110 -10.80733 -10.63467 -10.49243 -10.32392 -9.98736 -8.55018 -8.51969 -7.89081 -5.44283 0.12975 0.35325 1.44718 1.47275 1.49371 1.57621 1.79600 1.85746 2.19979 2.52558 2.83120 3.28378 3.29713 3.55300 3.63075 3.85342 3.95767 4.01575 4.07916 4.15055 4.29131 4.41349 4.46891 4.50543 4.61986 4.62448 4.63821 4.73620 4.83547 4.86317 4.89379 4.92639 5.00689 5.05300 5.08393 5.09440 5.15998 5.18649 5.31015 5.36922 5.41179 5.44494 5.61785 5.65688 5.69932 5.76299 6.06507 6.08731 6.44834 6.56404 6.96686 7.14701 7.34735 7.82609 8.36145 9.15572 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.002325 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.461347 B =12041.938432 C =12260.514305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 N -0.579 5.579 4 C -0.270 4.270 5 H 0.049 0.951 6 C -0.027 4.027 7 N -0.912 5.912 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.280 1.280 12 C 0.178 3.822 13 H 0.102 0.898 14 C -0.127 4.127 15 C 0.493 3.507 16 O -0.553 6.553 17 N -0.669 5.669 18 C 0.119 3.881 19 C -0.118 4.118 20 C -0.148 4.148 21 C 0.134 3.866 22 N -0.560 5.560 23 C 0.081 3.919 24 C -0.117 4.117 25 C -0.143 4.143 26 C 0.497 3.503 27 O -0.560 6.560 28 C -0.129 4.129 29 C -0.113 4.113 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.044 0.956 35 H 0.255 0.745 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.419 0.581 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.117 0.883 48 H 0.149 0.851 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.510 -10.270 14.564 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 N -0.299 5.299 4 C -0.401 4.401 5 H 0.066 0.934 6 C -0.224 4.224 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.212 1.212 11 H -0.206 1.206 12 C 0.066 3.934 13 H 0.120 0.880 14 C -0.186 4.186 15 C 0.281 3.719 16 O -0.429 6.429 17 N -0.316 5.316 18 C 0.023 3.977 19 C -0.139 4.139 20 C -0.168 4.168 21 C 0.039 3.961 22 N -0.283 5.283 23 C -0.039 4.039 24 C -0.154 4.154 25 C -0.183 4.183 26 C 0.289 3.711 27 O -0.440 6.440 28 C -0.150 4.150 29 C -0.133 4.133 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.257 0.743 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.135 0.865 48 H 0.167 0.833 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.382 -10.539 14.556 24.317 hybrid contribution -0.481 1.213 -0.959 1.619 sum 15.901 -9.326 13.597 22.906 Atomic orbital electron populations 1.22257 0.98141 1.00044 1.00900 1.20788 0.92482 0.85795 0.98469 1.43622 1.73610 1.10926 1.01725 1.19235 1.38883 0.92772 0.89193 0.93373 1.25827 0.97856 0.98863 0.99863 1.69957 1.44592 1.10323 1.30692 0.85386 0.77784 0.77798 0.80041 1.21085 1.21207 1.20577 1.20253 0.91105 0.96219 0.85791 0.88050 1.21979 0.98422 1.00103 0.98120 1.23160 0.83788 0.85108 0.79859 1.90549 1.60377 1.26441 1.65577 1.43866 1.33078 1.33127 1.21511 1.18068 0.88982 0.98429 0.92179 1.20962 0.99677 1.01267 0.92023 1.21428 0.93916 0.99816 1.01668 1.17833 0.89214 0.97070 0.91955 1.46083 1.24586 1.49596 1.08065 1.22650 0.89272 0.95517 0.96510 1.22703 1.04013 0.98016 0.90678 1.22439 0.94667 0.99888 1.01300 1.22113 0.87659 0.80258 0.81106 1.90598 1.52930 1.49047 1.51402 1.20736 0.99670 1.02428 0.92166 1.20973 0.92945 0.99381 1.00050 0.92163 0.93337 0.94790 0.95455 0.93787 0.93505 0.94266 0.91648 0.91916 0.74262 0.83397 0.83355 0.88932 0.88534 0.88940 0.85445 0.85451 0.86469 0.83307 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 10.00 71.98 0.72 -5.55 16 2 C 0.15 6.88 5.16 86.38 0.45 7.33 16 3 N -0.58 -29.20 2.15 -682.21 -1.47 -30.67 16 4 C -0.27 -14.86 9.54 84.03 0.80 -14.05 16 5 H 0.05 2.73 7.84 -2.91 -0.02 2.70 16 6 C -0.03 -1.41 5.08 84.86 0.43 -0.98 16 7 N -0.91 -48.61 10.16 21.65 0.22 -48.39 16 8 Si 0.96 43.68 29.56 68.60 2.03 45.70 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.18 8.03 2.17 44.25 0.10 8.13 16 13 H 0.10 5.11 6.02 -2.38 -0.01 5.09 16 14 C -0.13 -5.04 7.98 71.98 0.57 -4.46 16 15 C 0.49 20.67 6.61 87.66 0.58 21.25 16 16 O -0.55 -26.18 12.16 -3.07 -0.04 -26.22 16 17 N -0.67 -22.53 5.27 -303.38 -1.60 -24.13 16 18 C 0.12 3.88 6.29 38.13 0.24 4.12 16 19 C -0.12 -3.36 9.95 22.38 0.22 -3.14 16 20 C -0.15 -4.26 9.28 22.37 0.21 -4.05 16 21 C 0.13 3.54 6.60 38.12 0.25 3.79 16 22 N -0.56 -11.27 3.14 -627.55 -1.97 -13.24 16 23 C 0.08 0.83 6.27 86.83 0.54 1.37 16 24 C -0.12 -0.49 7.19 31.70 0.23 -0.26 16 25 C -0.14 -1.25 6.87 30.64 0.21 -1.04 16 26 C 0.50 10.34 7.92 87.90 0.70 11.04 16 27 O -0.56 -16.40 14.81 -3.09 -0.05 -16.44 16 28 C -0.13 -3.47 9.40 22.37 0.21 -3.26 16 29 C -0.11 -3.76 8.65 22.37 0.19 -3.57 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.95 5.91 -2.39 -0.01 1.94 16 32 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.03 1.28 8.07 -2.38 -0.02 1.26 16 34 H 0.04 2.01 6.35 -2.39 -0.02 1.99 16 35 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 36 H 0.04 1.49 6.48 -2.39 -0.02 1.48 16 37 H 0.06 2.10 7.47 -2.38 -0.02 2.08 16 38 H 0.06 2.82 7.30 -2.39 -0.02 2.80 16 39 H 0.42 11.69 8.11 -92.71 -0.75 10.94 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.15 4.51 5.24 -2.91 -0.02 4.49 16 42 H 0.09 0.88 7.69 -2.39 -0.02 0.86 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.15 3.10 7.00 -2.91 -0.02 3.08 16 49 H 0.12 4.50 6.36 -2.91 -0.02 4.48 16 Total: -1.00 -72.13 386.74 4.01 -68.12 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.23 Total: 28.61 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.65 Total: 16.66 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.82 Total: -116.42 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.08 Total: -42.67 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.13 4.01 -68.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298251681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.739 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds