Wall clock time and date at job start Wed Apr 1 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47183 * 2 1 4 4 C 1.46503 * 119.99467 * 270.00359 * 3 2 1 5 5 C 1.50705 * 109.46865 * 269.99500 * 4 3 2 6 6 O 1.21285 * 119.99657 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00263 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00471 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47098 * 89.99820 * 8 7 5 10 10 H 1.07999 * 120.00039 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00150 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46844 * 60.00184 * 13 11 9 15 15 H 1.48493 * 109.46948 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47172 * 300.00334 * 13 11 9 17 17 C 1.46505 * 119.99696 * 0.02562 * 7 5 4 18 18 C 1.52991 * 109.47538 * 90.00023 * 17 7 5 19 19 C 1.47201 * 109.47446 * 179.97438 * 18 17 7 20 20 N 7.72613 * 91.76013 * 322.42146 * 2 1 3 21 21 C 1.39664 * 120.00400 * 89.99471 * 3 2 1 22 22 C 1.38970 * 120.04955 * 179.97438 * 21 3 2 23 23 C 1.38105 * 120.03860 * 180.02562 * 22 21 3 24 24 C 1.38226 * 120.12633 * 359.74694 * 23 22 21 25 25 C 1.38763 * 120.09039 * 0.50784 * 24 23 22 26 26 O 1.35905 * 120.01951 * 179.76750 * 25 24 23 27 27 C 1.42901 * 116.99604 * 359.72480 * 26 25 24 28 28 C 1.38618 * 119.96644 * 359.49430 * 25 24 23 29 29 H 1.08995 * 109.47043 * 300.00119 * 1 2 3 30 30 H 1.08997 * 109.47274 * 60.00220 * 1 2 3 31 31 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47478 * 239.99715 * 2 1 3 33 33 H 1.08997 * 109.47274 * 119.99780 * 2 1 3 34 34 H 1.08996 * 109.47934 * 29.99759 * 4 3 2 35 35 H 1.09003 * 109.47321 * 150.00242 * 4 3 2 36 36 H 1.09000 * 109.47553 * 209.99913 * 8 7 5 37 37 H 1.09004 * 109.47281 * 330.00057 * 8 7 5 38 38 H 0.97003 * 120.00166 * 179.97438 * 12 11 9 39 39 H 1.09008 * 109.46613 * 210.00003 * 17 7 5 40 40 H 1.09002 * 109.47190 * 329.99288 * 17 7 5 41 41 H 1.09005 * 109.47056 * 300.00175 * 18 17 7 42 42 H 1.09002 * 109.47480 * 59.99443 * 18 17 7 43 43 H 1.08008 * 119.98021 * 0.02562 * 22 21 3 44 44 H 1.08001 * 119.93903 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.94954 * 180.27654 * 24 23 22 46 46 H 1.08998 * 109.47043 * 300.00197 * 27 26 25 47 47 H 1.08999 * 109.47144 * 59.99795 * 27 26 25 48 48 H 1.08995 * 109.47253 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.06229 * 180.23539 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7039 6 8 4.4234 1.1558 -1.0214 7 7 4.1390 2.3778 -2.8511 8 6 5.5227 2.1481 -3.2738 9 6 5.5875 0.9092 -4.1294 10 1 4.6879 0.3492 -4.3379 11 6 6.7954 0.4907 -4.6461 12 7 7.8910 1.1723 -4.3919 13 14 6.8758 -1.0454 -5.7061 14 1 6.0161 -0.8659 -6.9036 15 1 8.2786 -1.2789 -6.1336 16 1 6.3966 -2.2127 -4.9232 17 6 3.2480 3.1986 -3.6751 18 6 3.3549 4.6615 -3.2403 19 6 2.4602 5.4863 -4.0686 20 7 1.7673 6.1202 -4.7095 21 6 2.2511 2.0397 1.2095 22 6 2.7148 3.3497 1.2106 23 6 2.9454 4.0005 2.4067 24 6 2.7107 3.3531 3.6052 25 6 2.2527 2.0432 3.6103 26 8 2.0270 1.4064 4.7895 27 6 2.2883 2.1439 5.9854 28 6 2.0200 1.3864 2.4120 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0285 35 1 2.0955 3.1410 -1.1386 36 1 5.8742 3.0052 -3.8482 37 1 6.1539 2.0161 -2.3950 38 1 8.7408 0.8776 -4.7551 39 1 3.5366 3.1088 -4.7225 40 1 2.2205 2.8566 -3.5508 41 1 3.0664 4.7513 -2.1930 42 1 4.3824 5.0035 -3.3646 43 1 2.8951 3.8593 0.2754 44 1 3.3062 5.0185 2.4057 45 1 2.8877 3.8662 4.5389 46 1 3.3372 2.4395 6.0081 47 1 1.6595 3.0340 6.0080 48 1 2.0670 1.5211 6.8520 49 1 1.6599 0.3682 2.4142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299267133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:39 Heat of formation + Delta-G solvation = -4.152746 kcal Electronic energy + Delta-G solvation = -30463.619715 eV Core-core repulsion = 26391.904337 eV Total energy + Delta-G solvation = -4071.715378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.29822 -39.42518 -38.04786 -36.85466 -35.81061 -35.15051 -32.94618 -31.58515 -30.86966 -30.80862 -29.44268 -27.75874 -27.31436 -25.96327 -24.04791 -23.52733 -22.74411 -21.88603 -20.53458 -18.75179 -18.16105 -17.59816 -16.78329 -16.50499 -16.32444 -16.25388 -15.79969 -15.74812 -15.30988 -14.92795 -14.72640 -14.40110 -14.18389 -14.11846 -13.75343 -13.44839 -13.21506 -13.06446 -12.91699 -12.55226 -12.49322 -12.45658 -12.34804 -12.26910 -11.92810 -11.87250 -11.70201 -11.40722 -11.28121 -11.25211 -11.03269 -11.01341 -10.88556 -10.67157 -10.62062 -10.21588 -9.92749 -9.74629 -9.01500 -8.48971 -8.24170 -7.87301 -7.22174 -6.10609 -4.15485 1.58111 1.69576 2.69085 2.77780 2.89573 3.24717 3.28259 3.33415 3.35523 3.38535 3.67898 3.96290 4.19819 4.39871 4.81739 4.86986 4.89361 4.96270 5.02290 5.04223 5.08626 5.12069 5.17703 5.21093 5.25188 5.31408 5.32674 5.39123 5.42787 5.44256 5.47545 5.62064 5.78053 5.80639 5.82533 5.94590 6.02012 6.15739 6.32563 6.39734 6.57843 6.65894 6.88855 7.27689 7.34548 7.37536 7.42094 7.54607 7.58523 7.85080 8.15233 8.23251 8.81687 8.96309 9.50055 10.97453 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003173 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.429069 B = 8823.259952 C =10088.119625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 N -0.600 5.600 4 C 0.100 3.900 5 C 0.483 3.517 6 O -0.515 6.515 7 N -0.598 5.598 8 C 0.246 3.754 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.117 3.883 18 C -0.051 4.051 19 C 0.216 3.784 20 N -0.444 5.444 21 C 0.268 3.732 22 C -0.226 4.226 23 C -0.034 4.034 24 C -0.270 4.270 25 C 0.167 3.833 26 O -0.321 6.321 27 C 0.030 3.970 28 C -0.230 4.230 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 4.624 13.913 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 N -0.308 5.308 4 C -0.028 4.028 5 C 0.268 3.732 6 O -0.390 6.390 7 N -0.331 5.331 8 C 0.127 3.873 9 C -0.568 4.568 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.010 4.010 18 C -0.093 4.093 19 C -0.102 4.102 20 N -0.121 5.121 21 C 0.165 3.835 22 C -0.249 4.249 23 C -0.053 4.053 24 C -0.291 4.291 25 C 0.122 3.878 26 O -0.234 6.234 27 C -0.065 4.065 28 C -0.253 4.253 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.114 0.886 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.397 4.886 13.159 20.107 hybrid contribution 0.657 -0.811 -0.401 1.118 sum -13.740 4.075 12.758 19.188 Atomic orbital electron populations 1.22233 0.96377 1.01940 1.02330 1.21422 0.93348 0.82047 1.03544 1.46110 1.69602 1.13259 1.01795 1.21502 0.95475 0.99102 0.86699 1.21050 0.89730 0.80946 0.81509 1.90718 1.57617 1.37425 1.53221 1.48272 1.14884 1.48791 1.21158 1.19322 0.75243 0.96548 0.96144 1.21360 0.93988 1.10489 1.30960 0.92516 1.24912 0.95468 0.97066 0.96486 1.69906 0.98836 1.39461 1.44976 0.86589 0.77044 0.83467 0.80507 1.20247 1.21192 1.20211 1.21317 0.94896 0.86992 0.97800 1.19912 0.97992 0.93882 0.97468 1.29126 0.93638 0.93680 0.93738 1.81256 1.10762 1.10159 1.09965 1.17363 0.90432 0.90692 0.85025 1.20540 1.11197 0.94576 0.98556 1.20590 0.94711 0.98737 0.91298 1.20888 1.13860 0.95369 0.98983 1.18614 0.93516 0.90674 0.85039 1.86031 1.82795 1.41833 1.12726 1.22995 1.00940 0.97282 0.85270 1.19691 1.15503 1.01529 0.88553 0.92295 0.92548 0.91780 0.90431 0.90376 0.88181 0.88315 0.94790 0.93654 0.92600 0.88622 0.90784 0.87728 0.86375 0.86292 0.86087 0.86243 0.92666 0.92802 0.88640 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.12 1.44 5.88 -4.04 -0.02 1.41 16 3 N -0.60 -8.05 2.09 -173.14 -0.36 -8.41 16 4 C 0.10 1.25 4.19 -5.19 -0.02 1.23 16 5 C 0.48 8.55 7.74 -10.99 -0.09 8.46 16 6 O -0.52 -11.86 16.01 5.55 0.09 -11.77 16 7 N -0.60 -10.45 2.46 -175.06 -0.43 -10.88 16 8 C 0.25 5.72 5.16 -5.19 -0.03 5.70 16 9 C -0.53 -13.91 9.39 -34.44 -0.32 -14.23 16 10 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 13 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 18 C -0.05 -0.50 6.03 -29.52 -0.18 -0.67 16 19 C 0.22 2.47 15.44 -20.73 -0.32 2.15 16 20 N -0.44 -6.29 18.54 42.19 0.78 -5.51 16 21 C 0.27 3.78 6.55 -83.81 -0.55 3.23 16 22 C -0.23 -2.99 9.20 -39.36 -0.36 -3.35 16 23 C -0.03 -0.41 10.03 -39.63 -0.40 -0.81 16 24 C -0.27 -3.24 9.04 -39.39 -0.36 -3.60 16 25 C 0.17 2.23 6.68 -39.25 -0.26 1.96 16 26 O -0.32 -3.91 10.49 -19.44 -0.20 -4.12 16 27 C 0.03 0.24 9.81 101.05 0.99 1.23 16 28 C -0.23 -3.20 9.14 -39.24 -0.36 -3.56 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 33 H 0.08 0.96 6.20 -51.93 -0.32 0.64 16 34 H 0.10 1.04 7.33 -51.93 -0.38 0.66 16 35 H 0.10 0.99 5.24 -51.93 -0.27 0.72 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.10 1.29 8.07 -51.92 -0.42 0.87 16 40 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 41 H 0.10 0.80 7.22 -51.93 -0.37 0.43 16 42 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.12 1.42 6.14 -52.48 -0.32 1.09 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.15 6.29 -52.48 -0.33 0.82 16 46 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 47 H 0.05 0.36 7.65 -51.93 -0.40 -0.03 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.13 1.69 6.14 -52.49 -0.32 1.37 16 LS Contribution 411.72 15.07 6.20 6.20 Total: -1.00 -34.51 411.72 -7.39 -41.91 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.18 Total: 0.20 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.01 Total: 0.97 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.73 Total: -49.45 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.12 Total: -15.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.51 -7.39 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299267133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.756 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds