Wall clock time and date at job start Wed Apr 1 2020 04:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47183 * 2 1 4 4 C 1.46503 * 119.99467 * 270.00359 * 3 2 1 5 5 C 1.50705 * 109.46865 * 269.99500 * 4 3 2 6 6 O 1.21285 * 119.99657 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00263 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00471 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47098 * 89.99820 * 8 7 5 10 10 H 1.07999 * 120.00039 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00150 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46844 * 60.00184 * 13 11 9 15 15 H 1.48493 * 109.46948 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47172 * 300.00334 * 13 11 9 17 17 C 1.46505 * 119.99696 * 0.02562 * 7 5 4 18 18 C 1.52991 * 109.47538 * 90.00023 * 17 7 5 19 19 C 1.47201 * 109.47446 * 179.97438 * 18 17 7 20 20 N 7.72613 * 91.76013 * 322.42146 * 2 1 3 21 21 C 1.39664 * 120.00400 * 89.99471 * 3 2 1 22 22 C 1.38970 * 120.04955 * 179.97438 * 21 3 2 23 23 C 1.38105 * 120.03860 * 180.02562 * 22 21 3 24 24 C 1.38226 * 120.12633 * 359.74694 * 23 22 21 25 25 C 1.38763 * 120.09039 * 0.50784 * 24 23 22 26 26 O 1.35905 * 120.01951 * 179.76750 * 25 24 23 27 27 C 1.42901 * 116.99604 * 359.72480 * 26 25 24 28 28 C 1.38618 * 119.96644 * 359.49430 * 25 24 23 29 29 H 1.08995 * 109.47043 * 300.00119 * 1 2 3 30 30 H 1.08997 * 109.47274 * 60.00220 * 1 2 3 31 31 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47478 * 239.99715 * 2 1 3 33 33 H 1.08997 * 109.47274 * 119.99780 * 2 1 3 34 34 H 1.08996 * 109.47934 * 29.99759 * 4 3 2 35 35 H 1.09003 * 109.47321 * 150.00242 * 4 3 2 36 36 H 1.09000 * 109.47553 * 209.99913 * 8 7 5 37 37 H 1.09004 * 109.47281 * 330.00057 * 8 7 5 38 38 H 0.97003 * 120.00166 * 179.97438 * 12 11 9 39 39 H 1.09008 * 109.46613 * 210.00003 * 17 7 5 40 40 H 1.09002 * 109.47190 * 329.99288 * 17 7 5 41 41 H 1.09005 * 109.47056 * 300.00175 * 18 17 7 42 42 H 1.09002 * 109.47480 * 59.99443 * 18 17 7 43 43 H 1.08008 * 119.98021 * 0.02562 * 22 21 3 44 44 H 1.08001 * 119.93903 * 179.97438 * 23 22 21 45 45 H 1.08003 * 119.94954 * 180.27654 * 24 23 22 46 46 H 1.08998 * 109.47043 * 300.00197 * 27 26 25 47 47 H 1.08999 * 109.47144 * 59.99795 * 27 26 25 48 48 H 1.08995 * 109.47253 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.06229 * 180.23539 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7039 6 8 4.4234 1.1558 -1.0214 7 7 4.1390 2.3778 -2.8511 8 6 5.5227 2.1481 -3.2738 9 6 5.5875 0.9092 -4.1294 10 1 4.6879 0.3492 -4.3379 11 6 6.7954 0.4907 -4.6461 12 7 7.8910 1.1723 -4.3919 13 14 6.8758 -1.0454 -5.7061 14 1 6.0161 -0.8659 -6.9036 15 1 8.2786 -1.2789 -6.1336 16 1 6.3966 -2.2127 -4.9232 17 6 3.2480 3.1986 -3.6751 18 6 3.3549 4.6615 -3.2403 19 6 2.4602 5.4863 -4.0686 20 7 1.7673 6.1202 -4.7095 21 6 2.2511 2.0397 1.2095 22 6 2.7148 3.3497 1.2106 23 6 2.9454 4.0005 2.4067 24 6 2.7107 3.3531 3.6052 25 6 2.2527 2.0432 3.6103 26 8 2.0270 1.4064 4.7895 27 6 2.2883 2.1439 5.9854 28 6 2.0200 1.3864 2.4120 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0285 35 1 2.0955 3.1410 -1.1386 36 1 5.8742 3.0052 -3.8482 37 1 6.1539 2.0161 -2.3950 38 1 8.7408 0.8776 -4.7551 39 1 3.5366 3.1088 -4.7225 40 1 2.2205 2.8566 -3.5508 41 1 3.0664 4.7513 -2.1930 42 1 4.3824 5.0035 -3.3646 43 1 2.8951 3.8593 0.2754 44 1 3.3062 5.0185 2.4057 45 1 2.8877 3.8662 4.5389 46 1 3.3372 2.4395 6.0081 47 1 1.6595 3.0340 6.0080 48 1 2.0670 1.5211 6.8520 49 1 1.6599 0.3682 2.4142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299267133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:36 Heat of formation + Delta-G solvation = -24.284074 kcal Electronic energy + Delta-G solvation = -30464.492675 eV Core-core repulsion = 26391.904337 eV Total energy + Delta-G solvation = -4072.588338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.32045 -40.60578 -39.05780 -37.92198 -36.82744 -36.46274 -34.85728 -32.57595 -32.10162 -31.73017 -30.51742 -29.14493 -28.20742 -27.12729 -25.28989 -24.68321 -24.12354 -22.83223 -21.55539 -19.98151 -19.17575 -18.74234 -18.29961 -17.98598 -17.36447 -17.20229 -17.00660 -16.54986 -16.50221 -16.13095 -15.81049 -15.70649 -15.52556 -15.06759 -14.84384 -14.48110 -14.30287 -14.23146 -13.95185 -13.87906 -13.56299 -13.50187 -13.31696 -13.26168 -13.10363 -13.03231 -12.86467 -12.69703 -12.63672 -12.51039 -12.26873 -12.15628 -12.06396 -11.88124 -11.81376 -11.67501 -11.56198 -11.00004 -10.57655 -10.34519 -9.43891 -9.19692 -8.21903 -8.16591 -6.29124 0.62267 0.72955 1.39760 1.42711 1.49150 1.70736 1.87100 1.89901 1.98524 2.36035 2.47272 2.62035 2.99926 3.13650 3.19255 3.81176 3.93451 4.00203 4.07379 4.12654 4.16851 4.29797 4.32441 4.37667 4.44142 4.45521 4.51802 4.56120 4.59794 4.61479 4.70636 4.77787 4.86991 4.95471 5.00207 5.04942 5.07960 5.13358 5.35092 5.36414 5.40212 5.48391 5.62626 5.66837 5.74574 5.90116 6.14704 6.30797 6.46874 6.63808 6.64237 6.78709 6.85310 7.36395 7.57233 8.89433 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003173 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.429069 B = 8823.259952 C =10088.119625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 N -0.606 5.606 4 C 0.109 3.891 5 C 0.480 3.520 6 O -0.579 6.579 7 N -0.597 5.597 8 C 0.262 3.738 9 C -0.538 4.538 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.956 3.044 14 H -0.262 1.262 15 H -0.284 1.284 16 H -0.280 1.280 17 C 0.111 3.889 18 C -0.039 4.039 19 C 0.246 3.754 20 N -0.489 5.489 21 C 0.252 3.748 22 C -0.242 4.242 23 C -0.037 4.037 24 C -0.273 4.273 25 C 0.155 3.845 26 O -0.339 6.339 27 C 0.021 3.979 28 C -0.250 4.250 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.033 0.967 37 H -0.001 1.001 38 H 0.265 0.735 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.117 0.883 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.835 5.525 14.151 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 N -0.314 5.314 4 C -0.018 4.018 5 C 0.267 3.733 6 O -0.457 6.457 7 N -0.329 5.329 8 C 0.141 3.859 9 C -0.577 4.577 10 H 0.073 0.927 11 C -0.189 4.189 12 N -0.567 5.567 13 Si 0.781 3.219 14 H -0.186 1.186 15 H -0.209 1.209 16 H -0.206 1.206 17 C -0.013 4.013 18 C -0.080 4.080 19 C -0.071 4.071 20 N -0.167 5.167 21 C 0.149 3.851 22 C -0.264 4.264 23 C -0.056 4.056 24 C -0.293 4.293 25 C 0.109 3.891 26 O -0.253 6.253 27 C -0.073 4.073 28 C -0.273 4.273 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.137 0.863 43 H 0.149 0.851 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.135 0.865 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.399 5.816 13.386 21.953 hybrid contribution 1.302 -1.097 -0.358 1.740 sum -15.097 4.719 13.028 20.492 Atomic orbital electron populations 1.22109 0.93965 1.02878 1.02565 1.21467 0.95198 0.81615 1.02355 1.46252 1.69584 1.13621 1.01904 1.21620 0.91785 1.01284 0.87110 1.22075 0.91422 0.79326 0.80473 1.90692 1.59732 1.40215 1.55101 1.48138 1.13402 1.49438 1.21891 1.18739 0.78189 0.95466 0.93522 1.21730 0.93833 1.11355 1.30752 0.92746 1.25725 0.95332 0.99913 0.97907 1.70020 0.99278 1.41102 1.46275 0.85641 0.77248 0.79698 0.79268 1.18622 1.20938 1.20599 1.21562 0.95442 0.87891 0.96422 1.19849 0.97858 0.91586 0.98743 1.29152 0.92597 0.92740 0.92620 1.81303 1.12390 1.11602 1.11395 1.17585 0.90964 0.91344 0.85237 1.20810 1.11419 0.94470 0.99681 1.20965 0.93881 0.99904 0.90859 1.21197 1.13043 0.94944 1.00162 1.18824 0.93610 0.91314 0.85327 1.86007 1.82827 1.43030 1.13457 1.23295 1.01587 0.98152 0.84263 1.19842 1.16479 1.01697 0.89302 0.92666 0.91529 0.90513 0.91679 0.91585 0.85205 0.84972 0.94892 0.98320 0.92660 0.89723 0.87219 0.84604 0.86257 0.85069 0.83434 0.83982 0.92201 0.91457 0.86521 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.24 71.98 0.74 -1.96 16 2 C 0.12 2.78 5.88 86.38 0.51 3.29 16 3 N -0.61 -15.65 2.09 -701.68 -1.47 -17.12 16 4 C 0.11 2.47 4.19 85.63 0.36 2.83 16 5 C 0.48 16.69 7.74 87.66 0.68 17.37 16 6 O -0.58 -27.43 16.01 -3.05 -0.05 -27.48 16 7 N -0.60 -20.42 2.46 -826.14 -2.03 -22.45 16 8 C 0.26 12.48 5.16 85.63 0.44 12.92 16 9 C -0.54 -28.69 9.39 25.60 0.24 -28.45 16 10 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 11 C 0.01 0.57 5.46 84.65 0.46 1.03 16 12 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 13 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 C 0.11 2.48 5.17 86.38 0.45 2.93 16 18 C -0.04 -0.64 6.03 28.79 0.17 -0.47 16 19 C 0.25 4.96 15.44 89.43 1.38 6.34 16 20 N -0.49 -12.89 18.54 20.02 0.37 -12.52 16 21 C 0.25 6.93 6.55 38.20 0.25 7.18 16 22 C -0.24 -5.98 9.20 22.41 0.21 -5.77 16 23 C -0.04 -0.82 10.03 22.24 0.22 -0.60 16 24 C -0.27 -6.11 9.04 22.39 0.20 -5.90 16 25 C 0.16 4.05 6.68 22.49 0.15 4.20 16 26 O -0.34 -8.10 10.49 -92.48 -0.97 -9.07 16 27 C 0.02 0.30 9.81 113.37 1.11 1.41 16 28 C -0.25 -7.02 9.14 22.49 0.21 -6.82 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.07 1.69 6.20 -2.39 -0.01 1.68 16 34 H 0.13 2.20 7.33 -2.39 -0.02 2.19 16 35 H 0.13 2.11 5.24 -2.39 -0.01 2.09 16 36 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 37 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.08 2.12 8.07 -2.38 -0.02 2.10 16 40 H 0.11 1.70 6.44 -2.39 -0.02 1.69 16 41 H 0.14 1.48 7.22 -2.38 -0.02 1.46 16 42 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.13 2.76 6.14 -2.91 -0.02 2.74 16 44 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 45 H 0.14 2.40 6.29 -2.91 -0.02 2.38 16 46 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 47 H 0.07 0.76 7.65 -2.39 -0.02 0.75 16 48 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.12 3.42 6.14 -2.91 -0.02 3.40 16 Total: -1.00 -79.08 411.72 6.90 -72.18 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.96 Total: 15.03 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 7.78 Total: 9.52 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -2.84 Total: -105.67 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.02 Total: -36.54 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -79.08 6.90 -72.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299267133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.892 kcal (2) G-P(sol) polarization free energy of solvation -79.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds