Wall clock time and date at job start Wed Apr 1 2020 04:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47249 * 2 1 4 4 C 1.46499 * 120.00503 * 89.99623 * 3 2 1 5 5 C 1.50698 * 109.47057 * 89.99800 * 4 3 2 6 6 O 1.21290 * 119.99845 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00008 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99766 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47190 * 90.00274 * 8 7 5 10 10 H 1.08000 * 119.99693 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99914 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00311 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99640 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47382 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46974 * 120.00322 * 13 11 9 16 16 H 1.48504 * 109.47035 * 240.00057 * 13 11 9 17 17 C 1.46498 * 120.00094 * 0.02562 * 7 5 4 18 18 C 1.52997 * 109.47428 * 90.00154 * 17 7 5 19 19 C 1.47196 * 109.47221 * 180.02562 * 18 17 7 20 20 N 7.23696 * 85.27969 * 58.53041 * 2 1 3 21 21 C 1.39936 * 119.99712 * 269.99938 * 3 2 1 22 22 C 1.38861 * 120.01868 * 179.72809 * 21 3 2 23 23 C 1.38117 * 119.97955 * 179.74367 * 22 21 3 24 24 C 1.38701 * 120.01912 * 0.50409 * 23 22 21 25 25 O 1.35999 * 119.97901 * 179.74901 * 24 23 22 26 26 C 1.42898 * 117.00266 * 0.02562 * 25 24 23 27 27 C 1.38703 * 120.03540 * 359.76880 * 24 23 22 28 28 C 1.38106 * 120.02213 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47002 * 60.00085 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00351 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99358 * 2 1 3 33 33 H 1.09000 * 109.47050 * 239.99649 * 2 1 3 34 34 H 1.08995 * 109.47408 * 210.00417 * 4 3 2 35 35 H 1.09000 * 109.46694 * 330.00363 * 4 3 2 36 36 H 1.09000 * 109.47043 * 209.99688 * 8 7 5 37 37 H 1.08995 * 109.47759 * 329.99849 * 8 7 5 38 38 H 0.96994 * 120.00431 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.46822 * 210.00128 * 17 7 5 40 40 H 1.08999 * 109.46849 * 329.99810 * 17 7 5 41 41 H 1.09002 * 109.46600 * 299.99628 * 18 17 7 42 42 H 1.09000 * 109.47460 * 59.99436 * 18 17 7 43 43 H 1.07993 * 120.01252 * 359.97438 * 22 21 3 44 44 H 1.08000 * 119.98873 * 180.22922 * 23 22 21 45 45 H 1.09005 * 109.46963 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47210 * 300.00622 * 26 25 24 47 47 H 1.08998 * 109.46584 * 60.00347 * 26 25 24 48 48 H 1.07999 * 119.98531 * 179.97438 * 27 24 23 49 49 H 1.07996 * 120.00954 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 1.2687 5 6 3.6858 1.8351 1.7038 6 8 4.4237 1.1565 1.0210 7 7 4.1387 2.3773 2.8515 8 6 5.5224 2.1475 3.2742 9 6 6.4065 3.2293 2.7092 10 1 5.9803 4.0098 2.0963 11 6 7.7594 3.2228 2.9749 12 7 8.2785 2.2722 3.7209 13 14 8.8553 4.5634 2.2740 14 1 8.0335 5.5068 1.4741 15 1 9.5108 5.2984 3.3856 16 1 9.8929 3.9511 1.4058 17 6 3.2472 3.1965 3.6764 18 6 2.5210 2.3034 4.6843 19 6 1.6249 3.1264 5.5127 20 7 0.9345 3.7652 6.1516 21 6 2.2517 2.0408 -1.2119 22 6 2.7092 3.3519 -1.2124 23 6 2.9442 4.0004 -2.4091 24 6 2.7133 3.3459 -3.6100 25 8 2.9401 3.9870 -4.7878 26 6 3.4160 5.3323 -4.7131 27 6 2.2509 2.0382 -3.6103 28 6 2.0205 1.3865 -2.4147 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.0956 3.1411 1.1383 35 1 1.5817 1.6878 2.0283 36 1 5.5775 2.1649 4.3626 37 1 5.8576 1.1768 2.9089 38 1 9.2302 2.2678 3.9081 39 1 3.8323 3.9455 4.2101 40 1 2.5163 3.6932 3.0384 41 1 1.9360 1.5544 4.1506 42 1 3.2520 1.8065 5.3223 43 1 2.8848 3.8631 -0.2775 44 1 3.3035 5.0188 -2.4096 45 1 3.5553 5.7249 -5.7204 46 1 2.6890 5.9458 -4.1809 47 1 4.3670 5.3522 -4.1809 48 1 2.0711 1.5296 -4.5459 49 1 1.6601 0.3685 -2.4152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299368790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:45 Heat of formation + Delta-G solvation = -2.732583 kcal Electronic energy + Delta-G solvation = -30521.293205 eV Core-core repulsion = 26449.639410 eV Total energy + Delta-G solvation = -4071.653795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20666 -39.36677 -38.01957 -36.85997 -35.64488 -35.12844 -32.94421 -31.82831 -30.88106 -30.47775 -29.72314 -27.84892 -26.95073 -25.92725 -24.06905 -23.32075 -22.70563 -22.04375 -20.47501 -18.64169 -18.21451 -17.66107 -16.86752 -16.78399 -16.44621 -16.28523 -15.60786 -15.46906 -14.98387 -14.84580 -14.73600 -14.44211 -14.13171 -13.76044 -13.66716 -13.56569 -13.34287 -13.04002 -12.84817 -12.53235 -12.52594 -12.46607 -12.42879 -12.21024 -12.10148 -11.90763 -11.70280 -11.46887 -11.31094 -11.23312 -11.04052 -11.01797 -10.87421 -10.67366 -10.49988 -10.21545 -9.72679 -9.57928 -8.87938 -8.80684 -8.49728 -7.87432 -6.88956 -6.11172 -4.15493 1.49500 1.78561 2.67516 2.75968 3.06161 3.24834 3.26159 3.34769 3.38018 3.44539 3.67340 3.99155 4.19412 4.40045 4.81826 4.87109 4.88042 4.99262 5.03908 5.04563 5.09875 5.15267 5.17981 5.23279 5.26569 5.32175 5.36411 5.40634 5.43287 5.47579 5.56492 5.62270 5.72606 5.76946 5.81259 6.00898 6.08815 6.13033 6.20125 6.38846 6.55457 6.75432 6.88166 7.31225 7.34022 7.42208 7.43738 7.52867 7.68518 7.85177 8.14991 8.23142 8.82176 8.96738 9.50254 10.97031 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006847 B = 0.004055 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4088.289949 B = 6903.626353 C = 9438.227837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.607 5.607 4 C 0.102 3.898 5 C 0.482 3.518 6 O -0.516 6.516 7 N -0.599 5.599 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.117 3.883 18 C -0.050 4.050 19 C 0.216 3.784 20 N -0.444 5.444 21 C 0.200 3.800 22 C -0.152 4.152 23 C -0.154 4.154 24 C 0.062 3.938 25 O -0.325 6.325 26 C 0.030 3.970 27 C -0.104 4.104 28 C -0.157 4.157 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.094 0.906 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.126 0.874 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 -0.584 -8.742 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.318 5.318 4 C -0.026 4.026 5 C 0.266 3.734 6 O -0.390 6.390 7 N -0.332 5.332 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.010 4.010 18 C -0.092 4.092 19 C -0.102 4.102 20 N -0.122 5.122 21 C 0.100 3.900 22 C -0.174 4.174 23 C -0.174 4.174 24 C 0.016 3.984 25 O -0.239 6.239 26 C -0.066 4.066 27 C -0.124 4.124 28 C -0.180 4.180 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.144 0.856 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.263 -0.235 -8.135 18.186 hybrid contribution 1.258 0.784 -0.189 1.495 sum -15.005 0.549 -8.324 17.168 Atomic orbital electron populations 1.22257 0.96632 1.01738 1.02370 1.21327 0.93133 0.82298 1.03130 1.46010 1.71088 1.13079 1.01640 1.21432 0.95001 0.99174 0.86965 1.21139 0.89773 0.80901 0.81550 1.90711 1.57726 1.38280 1.52325 1.48284 1.13985 1.49691 1.21221 1.19326 0.74460 0.98247 0.95285 1.21433 0.92615 1.10614 1.31850 0.92412 1.24904 0.97900 0.96049 0.95076 1.69920 1.12859 1.32626 1.37842 0.86489 0.80629 0.81735 0.78852 1.19821 1.20976 1.20881 1.21308 0.93643 0.93176 0.92871 1.19903 0.95930 0.96741 0.96594 1.29141 0.93581 0.93844 0.93654 1.81260 1.10954 1.09701 1.10237 1.17651 0.95310 0.91356 0.85708 1.20471 1.04944 0.93955 0.98009 1.20959 1.04259 1.00483 0.91675 1.18737 1.02156 0.93090 0.84394 1.86014 1.82158 1.27433 1.28303 1.22952 0.98806 0.81483 1.03310 1.20088 1.02039 0.92144 0.98099 1.20425 1.07284 1.00122 0.90134 0.92325 0.91934 0.92614 0.90826 0.90650 0.88441 0.88600 0.94815 0.93708 0.92735 0.88659 0.90827 0.87704 0.86418 0.86010 0.85800 0.88797 0.93073 0.92834 0.85634 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.12 1.33 5.88 -4.04 -0.02 1.31 16 3 N -0.61 -7.91 2.10 -173.07 -0.36 -8.28 16 4 C 0.10 1.26 4.20 -5.20 -0.02 1.24 16 5 C 0.48 8.46 7.74 -10.99 -0.09 8.38 16 6 O -0.52 -11.78 16.01 5.55 0.09 -11.69 16 7 N -0.60 -10.41 2.46 -175.06 -0.43 -10.84 16 8 C 0.25 5.69 5.16 -5.19 -0.03 5.66 16 9 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 13 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.12 1.44 5.17 -4.04 -0.02 1.41 16 18 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 19 C 0.22 2.43 15.44 -20.73 -0.32 2.11 16 20 N -0.44 -6.23 18.54 42.19 0.78 -5.45 16 21 C 0.20 2.87 6.55 -83.70 -0.55 2.32 16 22 C -0.15 -2.24 9.21 -39.40 -0.36 -2.60 16 23 C -0.15 -2.17 9.03 -39.45 -0.36 -2.52 16 24 C 0.06 0.87 6.69 -39.24 -0.26 0.61 16 25 O -0.32 -4.28 10.50 -19.74 -0.21 -4.49 16 26 C 0.03 0.29 9.81 101.05 0.99 1.28 16 27 C -0.10 -1.38 9.98 -39.46 -0.39 -1.78 16 28 C -0.16 -2.06 9.20 -39.40 -0.36 -2.42 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.08 0.81 6.20 -51.93 -0.32 0.49 16 34 H 0.10 1.09 5.45 -51.93 -0.28 0.81 16 35 H 0.10 0.87 7.12 -51.93 -0.37 0.50 16 36 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 41 H 0.10 0.76 7.22 -51.93 -0.37 0.38 16 42 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.12 1.76 6.13 -52.49 -0.32 1.43 16 44 H 0.12 1.51 6.29 -52.49 -0.33 1.18 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 47 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 48 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 49 H 0.13 1.40 6.14 -52.49 -0.32 1.08 16 LS Contribution 411.75 15.07 6.21 6.21 Total: -1.00 -34.63 411.75 -7.40 -42.03 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.18 Total: 0.23 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.01 Total: 0.73 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.73 Total: -49.21 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.12 Total: -16.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.63 -7.40 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299368790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.294 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds