Wall clock time and date at job start Wed Apr 1 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47249 * 2 1 4 4 C 1.46499 * 120.00503 * 89.99623 * 3 2 1 5 5 C 1.50698 * 109.47057 * 89.99800 * 4 3 2 6 6 O 1.21290 * 119.99845 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00008 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99766 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47190 * 90.00274 * 8 7 5 10 10 H 1.08000 * 119.99693 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99914 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00311 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99640 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47382 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46974 * 120.00322 * 13 11 9 16 16 H 1.48504 * 109.47035 * 240.00057 * 13 11 9 17 17 C 1.46498 * 120.00094 * 0.02562 * 7 5 4 18 18 C 1.52997 * 109.47428 * 90.00154 * 17 7 5 19 19 C 1.47196 * 109.47221 * 180.02562 * 18 17 7 20 20 N 7.23696 * 85.27969 * 58.53041 * 2 1 3 21 21 C 1.39936 * 119.99712 * 269.99938 * 3 2 1 22 22 C 1.38861 * 120.01868 * 179.72809 * 21 3 2 23 23 C 1.38117 * 119.97955 * 179.74367 * 22 21 3 24 24 C 1.38701 * 120.01912 * 0.50409 * 23 22 21 25 25 O 1.35999 * 119.97901 * 179.74901 * 24 23 22 26 26 C 1.42898 * 117.00266 * 0.02562 * 25 24 23 27 27 C 1.38703 * 120.03540 * 359.76880 * 24 23 22 28 28 C 1.38106 * 120.02213 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47002 * 60.00085 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00351 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99358 * 2 1 3 33 33 H 1.09000 * 109.47050 * 239.99649 * 2 1 3 34 34 H 1.08995 * 109.47408 * 210.00417 * 4 3 2 35 35 H 1.09000 * 109.46694 * 330.00363 * 4 3 2 36 36 H 1.09000 * 109.47043 * 209.99688 * 8 7 5 37 37 H 1.08995 * 109.47759 * 329.99849 * 8 7 5 38 38 H 0.96994 * 120.00431 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.46822 * 210.00128 * 17 7 5 40 40 H 1.08999 * 109.46849 * 329.99810 * 17 7 5 41 41 H 1.09002 * 109.46600 * 299.99628 * 18 17 7 42 42 H 1.09000 * 109.47460 * 59.99436 * 18 17 7 43 43 H 1.07993 * 120.01252 * 359.97438 * 22 21 3 44 44 H 1.08000 * 119.98873 * 180.22922 * 23 22 21 45 45 H 1.09005 * 109.46963 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.47210 * 300.00622 * 26 25 24 47 47 H 1.08998 * 109.46584 * 60.00347 * 26 25 24 48 48 H 1.07999 * 119.98531 * 179.97438 * 27 24 23 49 49 H 1.07996 * 120.00954 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 1.2687 5 6 3.6858 1.8351 1.7038 6 8 4.4237 1.1565 1.0210 7 7 4.1387 2.3773 2.8515 8 6 5.5224 2.1475 3.2742 9 6 6.4065 3.2293 2.7092 10 1 5.9803 4.0098 2.0963 11 6 7.7594 3.2228 2.9749 12 7 8.2785 2.2722 3.7209 13 14 8.8553 4.5634 2.2740 14 1 8.0335 5.5068 1.4741 15 1 9.5108 5.2984 3.3856 16 1 9.8929 3.9511 1.4058 17 6 3.2472 3.1965 3.6764 18 6 2.5210 2.3034 4.6843 19 6 1.6249 3.1264 5.5127 20 7 0.9345 3.7652 6.1516 21 6 2.2517 2.0408 -1.2119 22 6 2.7092 3.3519 -1.2124 23 6 2.9442 4.0004 -2.4091 24 6 2.7133 3.3459 -3.6100 25 8 2.9401 3.9870 -4.7878 26 6 3.4160 5.3323 -4.7131 27 6 2.2509 2.0382 -3.6103 28 6 2.0205 1.3865 -2.4147 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.0956 3.1411 1.1383 35 1 1.5817 1.6878 2.0283 36 1 5.5775 2.1649 4.3626 37 1 5.8576 1.1768 2.9089 38 1 9.2302 2.2678 3.9081 39 1 3.8323 3.9455 4.2101 40 1 2.5163 3.6932 3.0384 41 1 1.9360 1.5544 4.1506 42 1 3.2520 1.8065 5.3223 43 1 2.8848 3.8631 -0.2775 44 1 3.3035 5.0188 -2.4096 45 1 3.5553 5.7249 -5.7204 46 1 2.6890 5.9458 -4.1809 47 1 4.3670 5.3522 -4.1809 48 1 2.0711 1.5296 -4.5459 49 1 1.6601 0.3685 -2.4152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299368790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:43 Heat of formation + Delta-G solvation = -22.891721 kcal Electronic energy + Delta-G solvation = -30522.167371 eV Core-core repulsion = 26449.639410 eV Total energy + Delta-G solvation = -4072.527961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.28218 -40.57613 -39.05420 -37.92041 -36.74821 -36.36799 -34.86090 -32.78212 -32.13367 -31.40898 -30.82993 -29.23648 -28.03214 -27.03954 -25.29080 -24.70247 -23.79435 -23.13093 -21.50606 -19.92295 -19.21271 -18.79033 -18.32570 -17.99712 -17.81978 -17.36818 -16.84065 -16.50252 -16.26173 -15.95966 -15.78236 -15.58674 -15.52321 -14.88289 -14.69018 -14.54352 -14.33245 -14.19096 -14.05986 -13.86209 -13.56671 -13.51346 -13.46582 -13.31803 -13.18256 -13.01390 -12.82537 -12.75079 -12.68784 -12.53426 -12.35292 -12.17810 -12.11060 -11.83684 -11.81529 -11.64104 -11.45972 -10.82656 -10.59478 -10.05217 -9.88048 -9.43576 -8.18453 -7.90343 -6.29826 0.45642 0.73641 1.36597 1.39740 1.49339 1.70773 1.86530 1.92177 2.08367 2.38538 2.51379 2.58332 2.95576 3.12576 3.19284 3.81863 3.86798 3.95676 4.06722 4.09351 4.15765 4.24497 4.32736 4.39014 4.42257 4.46253 4.54637 4.55246 4.62060 4.66454 4.72549 4.76341 4.86819 4.97144 5.03198 5.07765 5.13590 5.15781 5.23995 5.35345 5.39488 5.48464 5.51485 5.62334 5.75902 5.89630 6.14178 6.35581 6.47784 6.63660 6.69102 6.78701 6.85849 7.35913 7.57962 8.88299 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006847 B = 0.004055 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4088.289949 B = 6903.626353 C = 9438.227837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.611 5.611 4 C 0.110 3.890 5 C 0.479 3.521 6 O -0.578 6.578 7 N -0.598 5.598 8 C 0.262 3.738 9 C -0.535 4.535 10 H 0.051 0.949 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.953 3.047 14 H -0.268 1.268 15 H -0.272 1.272 16 H -0.287 1.287 17 C 0.112 3.888 18 C -0.037 4.037 19 C 0.246 3.754 20 N -0.490 5.490 21 C 0.186 3.814 22 C -0.172 4.172 23 C -0.164 4.164 24 C 0.049 3.951 25 O -0.338 6.338 26 C 0.022 3.978 27 C -0.112 4.112 28 C -0.159 4.159 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.033 0.967 37 H 0.000 1.000 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.135 0.865 45 H 0.118 0.882 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.142 0.858 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.746 -0.031 -9.154 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.321 5.321 4 C -0.017 4.017 5 C 0.266 3.734 6 O -0.457 6.457 7 N -0.330 5.330 8 C 0.140 3.860 9 C -0.574 4.574 10 H 0.070 0.930 11 C -0.187 4.187 12 N -0.566 5.566 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.213 1.213 17 C -0.013 4.013 18 C -0.079 4.079 19 C -0.071 4.071 20 N -0.168 5.168 21 C 0.085 3.915 22 C -0.195 4.195 23 C -0.184 4.184 24 C 0.003 3.997 25 O -0.253 6.253 26 C -0.072 4.072 27 C -0.131 4.131 28 C -0.181 4.181 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.051 0.949 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.153 0.847 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.160 0.840 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.288 0.344 -8.526 20.180 hybrid contribution 1.904 0.595 -0.110 1.998 sum -16.384 0.939 -8.636 18.544 Atomic orbital electron populations 1.22145 0.94243 1.02858 1.02521 1.21489 0.94918 0.81116 1.02835 1.46217 1.70706 1.13859 1.01340 1.21549 0.91699 1.00572 0.87872 1.22172 0.91546 0.79282 0.80415 1.90683 1.59867 1.41038 1.54081 1.48153 1.12498 1.50249 1.22103 1.18745 0.77505 0.95047 0.94667 1.21768 0.93370 1.10939 1.31274 0.93044 1.25679 0.99424 0.98058 0.95548 1.70019 1.13166 1.34244 1.39168 0.85586 0.78777 0.79400 0.78377 1.19275 1.19770 1.21319 1.21538 0.93449 0.92892 0.93427 1.19841 0.95815 0.96322 0.95873 1.29192 0.92554 0.92743 0.92656 1.81307 1.12756 1.11030 1.11719 1.17876 0.95452 0.91488 0.86690 1.20605 1.06031 0.94614 0.98222 1.21141 1.04373 1.01174 0.91668 1.18951 1.02390 0.93627 0.84722 1.85993 1.82292 1.29003 1.28039 1.23200 0.98771 0.80177 1.05078 1.20395 1.01586 0.92153 0.98950 1.20673 1.06816 1.00876 0.89780 0.92813 0.90317 0.91753 0.91023 0.91209 0.86739 0.84219 0.94864 0.98147 0.92665 0.89919 0.87525 0.84278 0.86262 0.86184 0.84703 0.86351 0.92012 0.93232 0.84022 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.12 2.31 5.88 86.38 0.51 2.82 16 3 N -0.61 -14.84 2.10 -701.46 -1.47 -16.32 16 4 C 0.11 2.45 4.20 85.63 0.36 2.81 16 5 C 0.48 16.47 7.74 87.66 0.68 17.15 16 6 O -0.58 -26.98 16.01 -3.06 -0.05 -27.03 16 7 N -0.60 -20.40 2.46 -826.16 -2.03 -22.42 16 8 C 0.26 12.41 5.16 85.63 0.44 12.85 16 9 C -0.53 -28.68 9.39 25.60 0.24 -28.44 16 10 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 11 C 0.01 0.66 5.46 84.66 0.46 1.12 16 12 N -0.93 -53.69 13.29 21.45 0.28 -53.40 16 13 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 C 0.11 2.50 5.17 86.38 0.45 2.94 16 18 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 19 C 0.25 4.89 15.44 89.43 1.38 6.27 16 20 N -0.49 -12.85 18.54 20.02 0.37 -12.48 16 21 C 0.19 5.14 6.55 38.15 0.25 5.39 16 22 C -0.17 -5.01 9.21 22.39 0.21 -4.80 16 23 C -0.16 -4.55 9.03 22.35 0.20 -4.35 16 24 C 0.05 1.35 6.69 22.49 0.15 1.50 16 25 O -0.34 -8.66 10.50 -93.54 -0.98 -9.64 16 26 C 0.02 0.40 9.81 113.37 1.11 1.51 16 27 C -0.11 -2.87 9.98 22.35 0.22 -2.65 16 28 C -0.16 -4.02 9.20 22.39 0.21 -3.81 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.07 1.41 6.20 -2.39 -0.01 1.40 16 34 H 0.11 2.22 5.45 -2.39 -0.01 2.20 16 35 H 0.14 1.87 7.12 -2.39 -0.02 1.85 16 36 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 37 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 38 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 40 H 0.11 1.72 6.44 -2.39 -0.02 1.71 16 41 H 0.14 1.35 7.22 -2.39 -0.02 1.33 16 42 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.12 3.38 6.13 -2.91 -0.02 3.37 16 44 H 0.14 3.24 6.29 -2.91 -0.02 3.23 16 45 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 47 H 0.05 0.92 7.66 -2.39 -0.02 0.90 16 48 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 49 H 0.15 3.00 6.14 -2.91 -0.02 2.98 16 Total: -1.00 -78.74 411.75 6.89 -71.85 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.96 Total: 15.06 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.78 Total: 8.50 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -2.85 Total: -104.62 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.03 Total: -36.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.74 6.89 -71.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299368790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.963 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds