Wall clock time and date at job start Wed Apr 1 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46513 * 2 1 4 4 C 1.34774 * 119.99489 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00324 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99668 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.46764 * 179.97438 * 6 4 3 8 8 C 1.46898 * 110.99678 * 169.99730 * 7 6 4 9 9 C 1.53236 * 109.34263 * 187.25537 * 8 7 6 10 10 N 1.47087 * 108.51928 * 306.17354 * 9 8 7 11 11 C 1.34772 * 120.87692 * 231.20176 * 10 9 8 12 12 O 1.21588 * 120.00720 * 356.64212 * 11 10 9 13 13 C 1.47645 * 119.99617 * 176.63627 * 11 10 9 14 14 C 1.40006 * 119.89593 * 33.42248 * 13 11 10 15 15 C 1.36321 * 120.10893 * 179.75803 * 14 13 11 16 16 C 1.40887 * 119.89007 * 0.51614 * 15 14 13 17 17 C 1.41108 * 120.10524 * 179.71974 * 16 15 14 18 18 H 1.08000 * 119.99672 * 205.52477 * 17 16 15 19 19 C 1.40227 * 119.99722 * 25.52294 * 17 16 15 20 20 N 1.30644 * 120.00185 * 16.81538 * 19 17 16 21 21 Si 1.86798 * 119.99514 * 196.81649 * 19 17 16 22 22 H 1.48501 * 109.47463 * 60.00369 * 21 19 17 23 23 H 1.48499 * 109.47033 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47428 * 299.99736 * 21 19 17 25 25 C 1.40894 * 119.78942 * 359.73417 * 16 15 14 26 26 C 1.36309 * 119.89635 * 0.02562 * 25 16 15 27 27 C 1.47074 * 118.23522 * 51.18230 * 10 9 8 28 28 C 1.46893 * 111.00103 * 294.29924 * 7 6 4 29 29 H 1.08999 * 109.47433 * 299.99371 * 1 2 3 30 30 H 1.08993 * 109.47466 * 60.00256 * 1 2 3 31 31 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47365 * 240.00319 * 2 1 3 33 33 H 1.09000 * 109.47122 * 119.99547 * 2 1 3 34 34 H 0.96998 * 120.00378 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.47628 * 59.99795 * 6 4 3 36 36 H 1.09000 * 109.46721 * 299.99437 * 6 4 3 37 37 H 1.09008 * 109.49678 * 307.21329 * 8 7 6 38 38 H 1.08998 * 109.49559 * 67.29512 * 8 7 6 39 39 H 1.09004 * 109.62870 * 65.88098 * 9 8 7 40 40 H 1.08994 * 109.63431 * 186.45909 * 9 8 7 41 41 H 1.08003 * 119.94736 * 0.02562 * 14 13 11 42 42 H 1.07997 * 120.05471 * 180.27218 * 15 14 13 43 43 H 0.96999 * 119.99618 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.05083 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.95053 * 180.02562 * 26 25 16 46 46 H 1.09004 * 109.62485 * 189.10499 * 27 10 9 47 47 H 1.08994 * 109.63160 * 68.53108 * 27 10 9 48 48 H 1.08998 * 109.49498 * 292.70249 * 28 7 6 49 49 H 1.08996 * 109.49379 * 52.76370 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1314 0.7058 0.0015 6 6 3.8455 3.0485 0.0011 7 7 5.3145 3.0485 0.0022 8 6 5.8411 4.3992 -0.2354 9 6 7.3621 4.3280 -0.4071 10 7 7.9319 3.6344 0.7581 11 6 8.9497 4.1761 1.4560 12 8 9.4495 5.2221 1.0893 13 6 9.4576 3.4994 2.6659 14 6 9.4530 2.1012 2.7374 15 6 9.9255 1.4718 3.8505 16 6 10.4090 2.2310 4.9344 17 6 10.8937 1.5843 6.0911 18 1 10.8758 2.0948 7.0427 19 6 11.3985 0.2789 6.0050 20 7 11.7282 -0.2187 4.8429 21 14 11.5994 -0.7486 7.5520 22 1 10.2785 -0.9174 8.2093 23 1 12.1482 -2.0811 7.1935 24 1 12.5319 -0.0642 8.4833 25 6 10.4067 3.6379 4.8598 26 6 9.9368 4.2582 3.7407 27 6 7.3611 2.3343 1.1416 28 6 5.8400 2.4840 1.2524 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3879 2.1185 0.0004 35 1 3.4819 3.5621 0.8910 36 1 3.4825 3.5625 -0.8889 37 1 5.3919 4.8109 -1.1393 38 1 5.6005 5.0381 0.6143 39 1 7.6026 3.7758 -1.3156 40 1 7.7712 5.3363 -0.4692 41 1 9.0784 1.5201 1.9076 42 1 9.9256 0.3931 3.9029 43 1 12.0777 -1.1216 4.7835 44 1 10.7760 4.2241 5.6884 45 1 9.9350 5.3366 3.6824 46 1 7.7696 2.0246 2.1036 47 1 7.6015 1.5905 0.3821 48 1 5.5995 3.1496 2.0814 49 1 5.3898 1.5070 1.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340036332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:12 Heat of formation + Delta-G solvation = -21.428078 kcal Electronic energy + Delta-G solvation = -30096.785358 eV Core-core repulsion = 26024.320866 eV Total energy + Delta-G solvation = -4072.464493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.30254 -39.51635 -37.72381 -36.91055 -35.50541 -34.29582 -33.80836 -31.49143 -31.16902 -29.87443 -29.47521 -28.69793 -26.16364 -25.05154 -23.66912 -23.03236 -21.98505 -21.01129 -20.73011 -20.45542 -18.70172 -17.50005 -17.24357 -16.73256 -16.22929 -16.05593 -15.70800 -15.32612 -15.12269 -14.92877 -14.67555 -14.54743 -14.13865 -14.09344 -13.69064 -13.39446 -13.11259 -12.87816 -12.79225 -12.59607 -12.31369 -12.23096 -12.11027 -11.95059 -11.78379 -11.74706 -11.42125 -11.27940 -11.14361 -11.11156 -10.99938 -10.72932 -10.45785 -10.01976 -9.89774 -9.45204 -9.34927 -9.32416 -8.85651 -8.54405 -8.09430 -7.61876 -7.48918 -6.97045 -4.55630 2.31998 2.47319 2.78771 2.96104 2.97679 3.01124 3.01364 3.51829 3.75427 3.79158 3.93003 4.45804 4.52851 4.67761 4.69306 4.85939 4.93700 4.98552 5.02635 5.11298 5.35251 5.38974 5.42742 5.50239 5.52325 5.56144 5.63868 5.66869 5.81530 5.93921 6.06641 6.10733 6.13632 6.20945 6.28289 6.33412 6.76288 6.79780 6.86716 6.91010 7.01516 7.09688 7.16860 7.24585 7.46634 7.65181 7.83833 7.88468 8.05573 8.09075 8.14381 8.43660 8.67751 8.78728 9.02202 9.95476 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.002706 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.513482 B =10343.059311 C =12581.273568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.511 3.489 5 O -0.514 6.514 6 C 0.036 3.964 7 N -0.521 5.521 8 C 0.045 3.955 9 C 0.120 3.880 10 N -0.619 5.619 11 C 0.577 3.423 12 O -0.572 6.572 13 C -0.277 4.277 14 C -0.081 4.081 15 C -0.174 4.174 16 C 0.127 3.873 17 C -0.447 4.447 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.774 5.774 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.235 4.235 26 C -0.028 4.028 27 C 0.089 3.911 28 C 0.038 3.962 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.287 0.713 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.131 0.869 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.661 0.559 -8.215 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.297 3.703 5 O -0.388 6.388 6 C -0.095 4.095 7 N -0.246 5.246 8 C -0.084 4.084 9 C -0.004 4.004 10 N -0.353 5.353 11 C 0.372 3.628 12 O -0.453 6.453 13 C -0.281 4.281 14 C -0.100 4.100 15 C -0.194 4.194 16 C 0.124 3.876 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.398 5.398 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.255 4.255 26 C -0.047 4.047 27 C -0.034 4.034 28 C -0.090 4.090 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.148 0.852 47 H 0.089 0.911 48 H 0.052 0.948 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.520 -0.099 -8.910 21.457 hybrid contribution -0.593 0.289 1.145 1.322 sum -20.112 0.191 -7.764 21.560 Atomic orbital electron populations 1.22003 0.94522 1.03267 1.02428 1.21275 0.94079 0.83008 1.02539 1.46064 1.07171 1.08889 1.77116 1.20618 0.81967 0.91674 0.76056 1.90717 1.54824 1.46080 1.47175 1.21945 0.90587 0.93959 1.03014 1.61678 1.04331 1.21778 1.36849 1.22520 0.96298 0.88622 1.00926 1.21499 0.90902 0.99026 0.88960 1.48028 1.35449 1.21583 1.30244 1.18723 0.77839 0.83566 0.82682 1.90630 1.59178 1.25196 1.70290 1.18840 1.19331 0.93531 0.96396 1.20880 0.98311 0.92856 0.97951 1.21022 1.03551 0.99954 0.94833 1.17771 0.86559 0.91008 0.92307 1.19765 1.34063 0.97755 0.95868 0.89898 1.26071 0.92779 0.98026 0.97762 1.69730 1.27625 1.16439 1.25965 0.86276 0.79887 0.78619 0.81538 1.18541 1.20087 1.18756 1.20694 1.11323 0.94691 0.98750 1.20266 0.94524 0.97423 0.92512 1.22763 0.91414 0.85060 1.04143 1.22736 0.96602 1.01023 0.88678 0.91994 0.92031 0.90786 0.91494 0.91458 0.76784 0.91983 0.87937 0.89900 0.94307 0.91469 0.88929 0.87276 0.86086 0.90212 0.88448 0.88646 0.85199 0.91149 0.94782 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 10.03 37.16 0.37 -0.30 16 2 C 0.11 0.81 6.39 -4.04 -0.03 0.78 16 3 N -0.74 -5.36 5.56 -60.29 -0.33 -5.69 16 4 C 0.51 5.50 7.49 -10.98 -0.08 5.42 16 5 O -0.51 -7.82 14.33 5.56 0.08 -7.74 16 6 C 0.04 0.33 5.45 -4.97 -0.03 0.31 16 7 N -0.52 -6.60 4.37 -235.77 -1.03 -7.63 16 8 C 0.04 0.53 5.62 -3.70 -0.02 0.51 16 9 C 0.12 1.79 6.59 -3.60 -0.02 1.77 16 10 N -0.62 -11.27 3.01 -173.65 -0.52 -11.79 16 11 C 0.58 12.75 7.44 -12.42 -0.09 12.66 16 12 O -0.57 -14.00 16.24 5.29 0.09 -13.92 16 13 C -0.28 -6.45 5.55 -104.73 -0.58 -7.03 16 14 C -0.08 -1.85 7.36 -39.61 -0.29 -2.14 16 15 C -0.17 -4.32 8.63 -39.27 -0.34 -4.66 16 16 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16 17 C -0.45 -11.22 9.05 -37.75 -0.34 -11.56 16 18 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 19 C 0.07 1.77 5.15 -17.31 -0.09 1.68 16 20 N -0.77 -18.98 10.95 55.56 0.61 -18.37 16 21 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 25 C -0.24 -5.73 9.73 -39.27 -0.38 -6.12 16 26 C -0.03 -0.67 9.53 -39.61 -0.38 -1.05 16 27 C 0.09 1.48 5.03 -3.60 -0.02 1.46 16 28 C 0.04 0.55 5.26 -3.70 -0.02 0.53 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 1.66 8.47 -40.82 -0.35 1.31 16 35 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.10 0.68 7.97 -51.93 -0.41 0.27 16 37 H 0.08 0.76 7.99 -51.92 -0.41 0.34 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.45 7.08 -51.93 -0.37 1.08 16 41 H 0.11 2.22 5.30 -52.48 -0.28 1.95 16 42 H 0.12 3.05 6.18 -52.49 -0.32 2.72 16 43 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 44 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 45 H 0.10 2.17 7.97 -52.49 -0.42 1.75 16 46 H 0.13 2.37 3.67 -52.31 -0.19 2.18 16 47 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.10 1.52 5.76 -51.93 -0.30 1.22 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -31.90 391.25 -10.43 -42.33 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.25 Total: 9.44 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.93 Total: -5.08 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -1.28 Total: -43.48 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.17 Total: -21.66 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.90 -10.43 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340036332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.906 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds