Wall clock time and date at job start Wed Apr 1 2020 05:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46513 * 2 1 4 4 C 1.34774 * 119.99489 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00324 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99668 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.46764 * 179.97438 * 6 4 3 8 8 C 1.46898 * 110.99678 * 169.99730 * 7 6 4 9 9 C 1.53236 * 109.34263 * 187.25537 * 8 7 6 10 10 N 1.47087 * 108.51928 * 306.17354 * 9 8 7 11 11 C 1.34772 * 120.87692 * 231.20176 * 10 9 8 12 12 O 1.21588 * 120.00720 * 356.64212 * 11 10 9 13 13 C 1.47645 * 119.99617 * 176.63627 * 11 10 9 14 14 C 1.40006 * 119.89593 * 33.42248 * 13 11 10 15 15 C 1.36321 * 120.10893 * 179.75803 * 14 13 11 16 16 C 1.40887 * 119.89007 * 0.51614 * 15 14 13 17 17 C 1.41108 * 120.10524 * 179.71974 * 16 15 14 18 18 H 1.08000 * 119.99672 * 205.52477 * 17 16 15 19 19 C 1.40227 * 119.99722 * 25.52294 * 17 16 15 20 20 N 1.30644 * 120.00185 * 16.81538 * 19 17 16 21 21 Si 1.86798 * 119.99514 * 196.81649 * 19 17 16 22 22 H 1.48501 * 109.47463 * 60.00369 * 21 19 17 23 23 H 1.48499 * 109.47033 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47428 * 299.99736 * 21 19 17 25 25 C 1.40894 * 119.78942 * 359.73417 * 16 15 14 26 26 C 1.36309 * 119.89635 * 0.02562 * 25 16 15 27 27 C 1.47074 * 118.23522 * 51.18230 * 10 9 8 28 28 C 1.46893 * 111.00103 * 294.29924 * 7 6 4 29 29 H 1.08999 * 109.47433 * 299.99371 * 1 2 3 30 30 H 1.08993 * 109.47466 * 60.00256 * 1 2 3 31 31 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47365 * 240.00319 * 2 1 3 33 33 H 1.09000 * 109.47122 * 119.99547 * 2 1 3 34 34 H 0.96998 * 120.00378 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.47628 * 59.99795 * 6 4 3 36 36 H 1.09000 * 109.46721 * 299.99437 * 6 4 3 37 37 H 1.09008 * 109.49678 * 307.21329 * 8 7 6 38 38 H 1.08998 * 109.49559 * 67.29512 * 8 7 6 39 39 H 1.09004 * 109.62870 * 65.88098 * 9 8 7 40 40 H 1.08994 * 109.63431 * 186.45909 * 9 8 7 41 41 H 1.08003 * 119.94736 * 0.02562 * 14 13 11 42 42 H 1.07997 * 120.05471 * 180.27218 * 15 14 13 43 43 H 0.96999 * 119.99618 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.05083 * 179.97438 * 25 16 15 45 45 H 1.08000 * 119.95053 * 180.02562 * 26 25 16 46 46 H 1.09004 * 109.62485 * 189.10499 * 27 10 9 47 47 H 1.08994 * 109.63160 * 68.53108 * 27 10 9 48 48 H 1.08998 * 109.49498 * 292.70249 * 28 7 6 49 49 H 1.08996 * 109.49379 * 52.76370 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1314 0.7058 0.0015 6 6 3.8455 3.0485 0.0011 7 7 5.3145 3.0485 0.0022 8 6 5.8411 4.3992 -0.2354 9 6 7.3621 4.3280 -0.4071 10 7 7.9319 3.6344 0.7581 11 6 8.9497 4.1761 1.4560 12 8 9.4495 5.2221 1.0893 13 6 9.4576 3.4994 2.6659 14 6 9.4530 2.1012 2.7374 15 6 9.9255 1.4718 3.8505 16 6 10.4090 2.2310 4.9344 17 6 10.8937 1.5843 6.0911 18 1 10.8758 2.0948 7.0427 19 6 11.3985 0.2789 6.0050 20 7 11.7282 -0.2187 4.8429 21 14 11.5994 -0.7486 7.5520 22 1 10.2785 -0.9174 8.2093 23 1 12.1482 -2.0811 7.1935 24 1 12.5319 -0.0642 8.4833 25 6 10.4067 3.6379 4.8598 26 6 9.9368 4.2582 3.7407 27 6 7.3611 2.3343 1.1416 28 6 5.8400 2.4840 1.2524 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3879 2.1185 0.0004 35 1 3.4819 3.5621 0.8910 36 1 3.4825 3.5625 -0.8889 37 1 5.3919 4.8109 -1.1393 38 1 5.6005 5.0381 0.6143 39 1 7.6026 3.7758 -1.3156 40 1 7.7712 5.3363 -0.4692 41 1 9.0784 1.5201 1.9076 42 1 9.9256 0.3931 3.9029 43 1 12.0777 -1.1216 4.7835 44 1 10.7760 4.2241 5.6884 45 1 9.9350 5.3366 3.6824 46 1 7.7696 2.0246 2.1036 47 1 7.6015 1.5905 0.3821 48 1 5.5995 3.1496 2.0814 49 1 5.3898 1.5070 1.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340036332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:11 Heat of formation + Delta-G solvation = -42.988928 kcal Electronic energy + Delta-G solvation = -30097.720307 eV Core-core repulsion = 26024.320866 eV Total energy + Delta-G solvation = -4073.399441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52028 -40.72617 -39.20404 -38.51180 -36.27606 -35.82200 -35.42750 -32.87356 -31.87648 -31.52332 -31.28905 -29.74290 -27.79345 -26.28030 -24.94793 -23.88439 -23.34097 -22.78613 -21.95625 -21.49801 -20.21327 -19.34976 -18.17400 -18.05006 -17.49865 -17.08876 -16.91102 -16.79151 -16.40292 -15.99137 -15.87163 -15.71353 -15.44817 -15.28828 -15.03906 -14.87756 -14.51995 -14.32057 -14.02988 -13.88051 -13.65666 -13.34195 -13.26262 -13.07553 -12.87427 -12.82584 -12.75820 -12.67139 -12.41879 -12.39455 -12.27862 -12.12526 -12.05692 -11.77687 -11.26920 -11.13176 -10.81382 -10.60732 -10.06269 -9.79185 -9.49838 -9.41629 -9.26042 -8.76820 -6.47291 0.48895 1.09899 1.38816 1.44577 1.52289 1.68036 1.99447 2.03679 2.16918 2.19414 2.69719 2.95473 3.63074 3.73902 3.83156 3.91818 4.03016 4.14494 4.18487 4.23390 4.27250 4.31064 4.35248 4.40732 4.44603 4.52871 4.54200 4.61025 4.74701 4.81788 4.87106 4.91855 4.97809 5.02367 5.04056 5.07528 5.15245 5.27469 5.28507 5.51810 5.54874 5.60313 5.77583 5.86748 5.94413 5.97218 5.98908 6.21804 6.47755 6.54235 6.63245 6.78290 6.88533 7.31228 7.34046 8.18580 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.002706 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.513482 B =10343.059311 C =12581.273568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.721 5.721 4 C 0.506 3.494 5 O -0.568 6.568 6 C 0.038 3.962 7 N -0.534 5.534 8 C 0.054 3.946 9 C 0.112 3.888 10 N -0.611 5.611 11 C 0.574 3.426 12 O -0.601 6.601 13 C -0.286 4.286 14 C -0.070 4.070 15 C -0.194 4.194 16 C 0.100 3.900 17 C -0.476 4.476 18 H 0.086 0.914 19 C 0.036 3.964 20 N -0.804 5.804 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.258 1.258 25 C -0.247 4.247 26 C -0.036 4.036 27 C 0.089 3.911 28 C 0.050 3.950 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.417 0.583 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.296 0.704 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.112 0.888 47 H 0.072 0.928 48 H 0.030 0.970 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.094 0.646 -8.791 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.012 4.012 3 N -0.375 5.375 4 C 0.293 3.707 5 O -0.446 6.446 6 C -0.092 4.092 7 N -0.259 5.259 8 C -0.074 4.074 9 C -0.010 4.010 10 N -0.343 5.343 11 C 0.368 3.632 12 O -0.485 6.485 13 C -0.290 4.290 14 C -0.089 4.089 15 C -0.213 4.213 16 C 0.097 3.903 17 C -0.503 4.503 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.428 5.428 21 Si 0.808 3.192 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.267 4.267 26 C -0.055 4.055 27 C -0.033 4.033 28 C -0.078 4.078 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.254 0.746 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.040 0.010 -9.519 24.008 hybrid contribution 0.078 0.271 1.206 1.239 sum -21.962 0.282 -8.313 23.484 Atomic orbital electron populations 1.21943 0.91852 1.04040 1.03377 1.21313 0.96169 0.82644 1.01103 1.45957 1.06536 1.09715 1.75316 1.20997 0.82567 0.91869 0.75283 1.90702 1.56316 1.47612 1.49965 1.22073 0.88168 0.93333 1.05613 1.61590 1.06764 1.22131 1.35391 1.22487 0.93843 0.88296 1.02735 1.21777 0.93211 0.98278 0.87749 1.48042 1.34094 1.21820 1.30365 1.18539 0.78654 0.83277 0.82723 1.90605 1.60454 1.26327 1.71136 1.19108 1.19090 0.93838 0.97007 1.21053 0.96991 0.92902 0.97921 1.21016 1.04974 0.99584 0.95729 1.18120 0.87280 0.91754 0.93121 1.20052 1.35175 0.99201 0.95885 0.89555 1.26945 0.91709 0.98497 1.01070 1.69770 1.27726 1.17197 1.28061 0.85153 0.79955 0.76978 0.77136 1.18074 1.19010 1.18220 1.20843 1.11852 0.94570 0.99399 1.20433 0.94539 0.97915 0.92648 1.22687 0.93219 0.84353 1.03020 1.22474 0.94620 1.00910 0.89813 0.91180 0.90837 0.90180 0.92800 0.93195 0.74640 0.89982 0.84382 0.85957 0.94480 0.90594 0.89677 0.85275 0.86970 0.89316 0.87561 0.87947 0.87078 0.90976 0.95196 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.03 71.98 0.72 -0.20 16 2 C 0.11 1.46 6.39 86.38 0.55 2.01 16 3 N -0.72 -8.89 5.56 -463.06 -2.57 -11.46 16 4 C 0.51 9.97 7.49 87.66 0.66 10.62 16 5 O -0.57 -17.11 14.33 -3.03 -0.04 -17.15 16 6 C 0.04 0.58 5.45 85.56 0.47 1.04 16 7 N -0.53 -12.20 4.37 -899.83 -3.93 -16.14 16 8 C 0.05 1.13 5.62 86.38 0.49 1.61 16 9 C 0.11 3.18 6.59 86.35 0.57 3.75 16 10 N -0.61 -21.99 3.01 -821.56 -2.47 -24.46 16 11 C 0.57 25.60 7.44 86.73 0.64 26.25 16 12 O -0.60 -29.73 16.24 -3.99 -0.06 -29.80 16 13 C -0.29 -13.64 5.55 -19.93 -0.11 -13.75 16 14 C -0.07 -3.28 7.36 22.25 0.16 -3.12 16 15 C -0.19 -9.94 8.63 22.47 0.19 -9.75 16 16 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 17 C -0.48 -24.47 9.05 23.46 0.21 -24.26 16 18 H 0.09 4.22 7.90 -2.91 -0.02 4.20 16 19 C 0.04 1.73 5.15 85.35 0.44 2.17 16 20 N -0.80 -40.02 10.95 21.87 0.24 -39.78 16 21 Si 0.99 35.78 29.59 68.60 2.03 37.81 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 23 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 24 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 25 C -0.25 -12.44 9.73 22.47 0.22 -12.23 16 26 C -0.04 -1.77 9.53 22.25 0.21 -1.56 16 27 C 0.09 2.98 5.03 86.35 0.43 3.42 16 28 C 0.05 1.43 5.26 86.39 0.45 1.88 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.41 8.14 -2.38 -0.02 0.40 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.42 2.08 8.47 -92.71 -0.79 1.29 16 35 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 36 H 0.14 1.13 7.97 -2.39 -0.02 1.11 16 37 H 0.12 1.64 7.99 -2.38 -0.02 1.62 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.08 2.57 7.08 -2.39 -0.02 2.56 16 41 H 0.13 5.38 5.30 -2.91 -0.02 5.37 16 42 H 0.11 5.88 6.18 -2.91 -0.02 5.86 16 43 H 0.30 13.20 8.29 -92.71 -0.77 12.43 16 44 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 45 H 0.10 4.76 7.97 -2.91 -0.02 4.74 16 46 H 0.11 4.14 3.67 -2.74 -0.01 4.13 16 47 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 48 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.09 2.83 5.76 -2.39 -0.01 2.82 16 Total: -1.00 -71.86 391.25 -0.43 -72.29 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.19 Total: 35.58 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.20 Total: -6.89 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -8.74 Total: -91.84 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.11 Total: -46.95 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -71.86 -0.43 -72.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340036332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.298 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds