Wall clock time and date at job start Wed Apr 1 2020 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47110 * 2 1 4 4 C 1.46903 * 110.99737 * 163.42150 * 3 2 1 5 5 C 1.50697 * 109.46904 * 189.99550 * 4 3 2 6 6 C 1.38361 * 119.85715 * 270.30195 * 5 4 3 7 7 C 1.37963 * 120.14257 * 180.26216 * 6 5 4 8 8 C 1.39569 * 119.85274 * 359.43767 * 7 6 5 9 9 C 1.47841 * 120.14532 * 180.30189 * 8 7 6 10 10 O 1.21555 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00709 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00772 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47553 * 180.02562 * 12 11 9 14 14 O 1.21288 * 119.99473 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00059 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00221 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99533 * 359.97438 * 16 15 13 18 18 C 1.38944 * 120.00212 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00016 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47095 * 60.00049 * 20 18 16 22 22 H 1.48501 * 109.47053 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46980 * 299.99896 * 20 18 16 24 24 C 1.39583 * 119.71299 * 0.28054 * 8 7 6 25 25 C 1.37952 * 119.85368 * 359.97438 * 24 8 7 26 26 C 1.46903 * 111.00016 * 287.37272 * 3 2 1 27 27 C 1.53000 * 117.49768 * 138.15764 * 26 3 2 28 28 C 1.53001 * 60.00318 * 252.51539 * 27 26 3 29 29 H 1.08997 * 109.47127 * 193.91608 * 1 2 3 30 30 H 1.08998 * 109.46754 * 313.91422 * 1 2 3 31 31 H 1.08998 * 109.47274 * 73.90833 * 1 2 3 32 32 H 1.09001 * 109.46648 * 240.00205 * 2 1 3 33 33 H 1.09000 * 109.46749 * 120.00241 * 2 1 3 34 34 H 1.08997 * 109.46834 * 70.00226 * 4 3 2 35 35 H 1.08998 * 109.47053 * 309.99974 * 4 3 2 36 36 H 1.07995 * 119.92964 * 359.97438 * 6 5 4 37 37 H 1.08000 * 120.06738 * 179.72244 * 7 6 5 38 38 H 0.97002 * 119.99419 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.46682 * 300.00210 * 12 11 9 40 40 H 1.08996 * 109.46924 * 59.99521 * 12 11 9 41 41 H 0.97001 * 120.00099 * 359.97438 * 15 13 12 42 42 H 0.97001 * 119.99789 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.07190 * 180.02562 * 24 8 7 44 44 H 1.08000 * 119.92742 * 179.97438 * 25 24 8 45 45 H 1.09001 * 115.54904 * 283.87553 * 26 3 2 46 46 H 1.08995 * 117.49652 * 0.02562 * 27 26 3 47 47 H 1.09003 * 117.49481 * 145.02021 * 27 26 3 48 48 H 1.09001 * 117.49574 * 252.51293 * 28 27 26 49 49 H 1.08990 * 117.52189 * 107.48190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4345 1.4431 0.3913 5 6 3.8342 2.8783 0.6184 6 6 4.3264 3.6309 -0.4331 7 6 4.6992 4.9437 -0.2306 8 6 4.5680 5.5157 1.0357 9 6 4.9592 6.9239 1.2584 10 8 5.3959 7.5863 0.3374 11 7 4.8309 7.4737 2.4822 12 6 5.2180 8.8692 2.7028 13 6 4.9783 9.2352 4.1449 14 8 4.5278 8.4114 4.9127 15 7 5.2634 10.4781 4.5810 16 6 5.0458 10.8110 5.8930 17 1 4.6455 10.0772 6.5770 18 6 5.3403 12.0922 6.3428 19 7 5.8279 12.9848 5.5107 20 14 5.0431 12.5459 8.1304 21 1 5.8540 11.6629 9.0066 22 1 5.4350 13.9607 8.3538 23 1 3.6034 12.3750 8.4517 24 6 4.0653 4.7527 2.0908 25 6 3.7011 3.4395 1.8761 26 6 1.8091 2.0179 -1.3089 27 6 1.3099 3.4641 -1.3222 28 6 0.3681 2.3260 -1.7209 29 1 -0.3633 -0.9975 0.2471 30 1 -0.3633 0.7128 0.7403 31 1 -0.3634 0.2848 -0.9874 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0485 1.0161 -0.4015 35 1 3.5809 0.8754 1.3101 36 1 4.4232 3.1884 -1.4135 37 1 5.0874 5.5287 -1.0513 38 1 4.4821 6.9452 3.2171 39 1 6.2749 8.9945 2.4674 40 1 4.6232 9.5173 2.0593 41 1 5.6234 11.1370 3.9668 42 1 6.0332 13.8794 5.8246 43 1 3.9609 5.1896 3.0730 44 1 3.3124 2.8479 2.6918 45 1 2.5036 1.7175 -2.0935 46 1 1.1381 3.9460 -0.3598 47 1 1.6762 4.1156 -2.1156 48 1 0.1148 2.2289 -2.7766 49 1 -0.4235 2.0588 -1.0210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343516001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:05 Heat of formation + Delta-G solvation = -14.112052 kcal Electronic energy + Delta-G solvation = -29026.605314 eV Core-core repulsion = 24954.458068 eV Total energy + Delta-G solvation = -4072.147246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.30451 -39.37469 -38.37375 -37.73831 -34.87272 -34.50820 -33.74051 -32.70978 -31.39782 -31.04294 -30.14715 -27.79500 -25.84526 -24.45517 -23.23865 -22.79734 -22.44812 -22.21109 -20.61753 -20.10866 -19.63835 -18.29949 -17.74420 -16.58227 -16.25698 -15.82634 -15.67383 -15.50621 -15.25862 -15.16053 -14.94272 -14.65711 -14.33424 -13.90772 -13.89346 -13.77492 -13.62512 -13.46628 -13.20911 -12.82006 -12.69532 -12.37450 -12.20003 -11.93989 -11.86303 -11.70364 -11.63412 -11.47506 -11.42325 -11.10606 -11.08131 -10.50870 -10.49070 -10.37423 -10.31774 -9.80998 -9.63157 -9.07728 -9.01330 -8.79389 -8.64642 -8.64319 -8.10651 -6.51624 -3.93779 0.77179 1.30754 2.87652 3.13763 3.21410 3.23926 3.36564 3.44329 3.51626 3.73141 3.92164 4.11151 4.39673 4.56737 4.66524 4.68305 4.70577 4.80243 4.83608 4.84940 4.90691 5.01012 5.07826 5.16185 5.16784 5.20229 5.28251 5.32046 5.38625 5.50355 5.51149 5.62743 5.71187 5.77672 5.87396 5.88689 5.91734 5.95530 5.97689 6.06236 6.20539 6.31386 6.39902 6.61462 6.64906 6.75423 6.79764 7.45600 7.79422 7.91282 8.40548 8.45691 9.04014 9.38605 9.86425 10.65089 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.001793 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.275166 B =15611.325402 C =16181.001163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 N -0.507 5.507 4 C 0.095 3.905 5 C -0.055 4.055 6 C -0.115 4.115 7 C -0.062 4.062 8 C -0.126 4.126 9 C 0.554 3.446 10 O -0.548 6.548 11 N -0.702 5.702 12 C 0.108 3.892 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.085 4.085 25 C -0.106 4.106 26 C 0.003 3.997 27 C -0.154 4.154 28 C -0.177 4.177 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.410 0.590 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.979 -24.267 -14.346 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.073 4.073 3 N -0.231 5.231 4 C -0.031 4.031 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.081 4.081 8 C -0.129 4.129 9 C 0.341 3.659 10 O -0.427 6.427 11 N -0.356 5.356 12 C -0.019 4.019 13 C 0.213 3.787 14 O -0.485 6.485 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.104 4.104 25 C -0.125 4.125 26 C -0.105 4.105 27 C -0.192 4.192 28 C -0.215 4.215 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.250 0.750 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.177 -23.845 -14.060 28.597 hybrid contribution 0.462 0.123 0.279 0.553 sum -6.716 -23.722 -13.782 28.244 Atomic orbital electron populations 1.22001 0.94807 1.01648 1.02656 1.22044 0.96440 0.88156 1.00643 1.61873 1.17339 1.17215 1.26679 1.21060 0.87912 0.93296 1.00875 1.19802 0.96956 0.95286 0.93560 1.20896 1.00093 0.93922 0.98428 1.21185 0.96189 0.94540 0.96142 1.19949 1.04043 0.93802 0.95143 1.18267 0.78380 0.86700 0.82563 1.90748 1.46384 1.63216 1.42348 1.45641 1.65037 1.13347 1.11548 1.20978 1.01604 0.82806 0.96521 1.19723 0.85984 0.84189 0.88776 1.90489 1.51419 1.49783 1.56783 1.41784 1.55141 1.10024 1.11304 1.19682 1.40885 0.97218 0.85736 0.87707 1.25331 0.96549 0.95446 1.00380 1.69608 1.42842 1.05231 1.35740 0.85864 0.79057 0.77398 0.81594 1.19774 1.20854 1.19771 1.21432 0.96223 0.94165 0.98532 1.20910 0.99876 0.94867 0.96849 1.22340 0.97744 0.99339 0.91090 1.23009 1.02389 0.90523 1.03267 1.23244 0.93042 1.03583 1.01601 0.92586 0.91624 0.91994 0.94720 0.90876 0.93757 0.89591 0.86136 0.84828 0.75033 0.89688 0.89675 0.77005 0.91526 0.85147 0.85483 0.89877 0.88153 0.88895 0.89014 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.62 37.16 0.32 -0.57 16 2 C 0.05 0.34 5.70 -3.82 -0.02 0.31 16 3 N -0.51 -3.83 4.59 -228.07 -1.05 -4.88 16 4 C 0.10 0.70 5.10 -4.98 -0.03 0.68 16 5 C -0.06 -0.51 4.77 -104.53 -0.50 -1.01 16 6 C -0.11 -1.10 7.94 -39.64 -0.31 -1.42 16 7 C -0.06 -0.74 9.60 -39.19 -0.38 -1.11 16 8 C -0.13 -1.72 5.87 -104.97 -0.62 -2.33 16 9 C 0.55 9.28 7.77 -12.33 -0.10 9.18 16 10 O -0.55 -10.60 16.35 5.32 0.09 -10.52 16 11 N -0.70 -12.11 5.48 -62.44 -0.34 -12.46 16 12 C 0.11 2.04 6.15 -5.20 -0.03 2.00 16 13 C 0.43 9.85 7.85 -10.99 -0.09 9.76 16 14 O -0.60 -15.28 15.24 5.55 0.08 -15.20 16 15 N -0.55 -13.61 5.29 -10.97 -0.06 -13.67 16 16 C -0.31 -8.31 9.68 -14.94 -0.14 -8.45 16 17 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.13 16 20 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 24 C -0.08 -1.01 9.54 -39.18 -0.37 -1.38 16 25 C -0.11 -1.07 9.68 -39.64 -0.38 -1.46 16 26 C 0.00 0.03 3.90 -67.71 -0.26 -0.24 16 27 C -0.15 -1.29 9.08 -26.73 -0.24 -1.53 16 28 C -0.18 -1.24 8.66 -26.73 -0.23 -1.47 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 31 H 0.06 0.35 5.73 -51.93 -0.30 0.06 16 32 H 0.03 0.21 8.04 -51.93 -0.42 -0.21 16 33 H 0.07 0.40 7.80 -51.93 -0.40 0.00 16 34 H 0.04 0.30 8.06 -51.93 -0.42 -0.12 16 35 H 0.09 0.55 7.80 -51.93 -0.40 0.15 16 36 H 0.12 0.94 8.01 -52.49 -0.42 0.52 16 37 H 0.13 1.60 7.65 -52.49 -0.40 1.20 16 38 H 0.41 6.89 5.47 -40.82 -0.22 6.67 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.13 1.51 6.41 -52.49 -0.34 1.17 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.11 0.75 5.92 -51.93 -0.31 0.44 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -31.07 403.65 -10.24 -41.31 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -7.27 Total: 15.38 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -3.48 Total: 1.56 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.72 Total: -54.13 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.17 Total: -25.71 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.07 -10.24 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.202 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds