Wall clock time and date at job start Wed Apr 1 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47110 * 2 1 4 4 C 1.46903 * 110.99737 * 163.42150 * 3 2 1 5 5 C 1.50697 * 109.46904 * 189.99550 * 4 3 2 6 6 C 1.38361 * 119.85715 * 270.30195 * 5 4 3 7 7 C 1.37963 * 120.14257 * 180.26216 * 6 5 4 8 8 C 1.39569 * 119.85274 * 359.43767 * 7 6 5 9 9 C 1.47841 * 120.14532 * 180.30189 * 8 7 6 10 10 O 1.21555 * 119.99966 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00709 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00772 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47553 * 180.02562 * 12 11 9 14 14 O 1.21288 * 119.99473 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00059 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00221 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99533 * 359.97438 * 16 15 13 18 18 C 1.38944 * 120.00212 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00016 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47095 * 60.00049 * 20 18 16 22 22 H 1.48501 * 109.47053 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46980 * 299.99896 * 20 18 16 24 24 C 1.39583 * 119.71299 * 0.28054 * 8 7 6 25 25 C 1.37952 * 119.85368 * 359.97438 * 24 8 7 26 26 C 1.46903 * 111.00016 * 287.37272 * 3 2 1 27 27 C 1.53000 * 117.49768 * 138.15764 * 26 3 2 28 28 C 1.53001 * 60.00318 * 252.51539 * 27 26 3 29 29 H 1.08997 * 109.47127 * 193.91608 * 1 2 3 30 30 H 1.08998 * 109.46754 * 313.91422 * 1 2 3 31 31 H 1.08998 * 109.47274 * 73.90833 * 1 2 3 32 32 H 1.09001 * 109.46648 * 240.00205 * 2 1 3 33 33 H 1.09000 * 109.46749 * 120.00241 * 2 1 3 34 34 H 1.08997 * 109.46834 * 70.00226 * 4 3 2 35 35 H 1.08998 * 109.47053 * 309.99974 * 4 3 2 36 36 H 1.07995 * 119.92964 * 359.97438 * 6 5 4 37 37 H 1.08000 * 120.06738 * 179.72244 * 7 6 5 38 38 H 0.97002 * 119.99419 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.46682 * 300.00210 * 12 11 9 40 40 H 1.08996 * 109.46924 * 59.99521 * 12 11 9 41 41 H 0.97001 * 120.00099 * 359.97438 * 15 13 12 42 42 H 0.97001 * 119.99789 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.07190 * 180.02562 * 24 8 7 44 44 H 1.08000 * 119.92742 * 179.97438 * 25 24 8 45 45 H 1.09001 * 115.54904 * 283.87553 * 26 3 2 46 46 H 1.08995 * 117.49652 * 0.02562 * 27 26 3 47 47 H 1.09003 * 117.49481 * 145.02021 * 27 26 3 48 48 H 1.09001 * 117.49574 * 252.51293 * 28 27 26 49 49 H 1.08990 * 117.52189 * 107.48190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4345 1.4431 0.3913 5 6 3.8342 2.8783 0.6184 6 6 4.3264 3.6309 -0.4331 7 6 4.6992 4.9437 -0.2306 8 6 4.5680 5.5157 1.0357 9 6 4.9592 6.9239 1.2584 10 8 5.3959 7.5863 0.3374 11 7 4.8309 7.4737 2.4822 12 6 5.2180 8.8692 2.7028 13 6 4.9783 9.2352 4.1449 14 8 4.5278 8.4114 4.9127 15 7 5.2634 10.4781 4.5810 16 6 5.0458 10.8110 5.8930 17 1 4.6455 10.0772 6.5770 18 6 5.3403 12.0922 6.3428 19 7 5.8279 12.9848 5.5107 20 14 5.0431 12.5459 8.1304 21 1 5.8540 11.6629 9.0066 22 1 5.4350 13.9607 8.3538 23 1 3.6034 12.3750 8.4517 24 6 4.0653 4.7527 2.0908 25 6 3.7011 3.4395 1.8761 26 6 1.8091 2.0179 -1.3089 27 6 1.3099 3.4641 -1.3222 28 6 0.3681 2.3260 -1.7209 29 1 -0.3633 -0.9975 0.2471 30 1 -0.3633 0.7128 0.7403 31 1 -0.3634 0.2848 -0.9874 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0485 1.0161 -0.4015 35 1 3.5809 0.8754 1.3101 36 1 4.4232 3.1884 -1.4135 37 1 5.0874 5.5287 -1.0513 38 1 4.4821 6.9452 3.2171 39 1 6.2749 8.9945 2.4674 40 1 4.6232 9.5173 2.0593 41 1 5.6234 11.1370 3.9668 42 1 6.0332 13.8794 5.8246 43 1 3.9609 5.1896 3.0730 44 1 3.3124 2.8479 2.6918 45 1 2.5036 1.7175 -2.0935 46 1 1.1381 3.9460 -0.3598 47 1 1.6762 4.1156 -2.1156 48 1 0.1148 2.2289 -2.7766 49 1 -0.4235 2.0588 -1.0210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343516001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:02 Heat of formation + Delta-G solvation = -34.200724 kcal Electronic energy + Delta-G solvation = -29027.476424 eV Core-core repulsion = 24954.458068 eV Total energy + Delta-G solvation = -4073.018356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42130 -40.44619 -39.84902 -38.77497 -36.29345 -35.49207 -35.38671 -33.51374 -33.32835 -31.93324 -30.90715 -29.25170 -26.96357 -26.05260 -23.83958 -23.59114 -23.23512 -22.97601 -21.42081 -21.38280 -21.08644 -20.13345 -19.20650 -17.61161 -17.23100 -17.11216 -16.78752 -16.58714 -16.46538 -16.26422 -16.00482 -15.86454 -15.56841 -15.51124 -15.41634 -14.66307 -14.41778 -14.24141 -14.04743 -13.91537 -13.75514 -13.55078 -13.52285 -13.31187 -12.99222 -12.89797 -12.48062 -12.47744 -12.32980 -12.14176 -12.13206 -12.01038 -11.80754 -11.57446 -11.16519 -11.04674 -10.93274 -10.58785 -10.32448 -10.10843 -9.91309 -9.76472 -9.26437 -8.51694 -6.02239 -0.18405 0.45370 1.37512 1.42495 1.53509 1.75971 1.89464 1.96703 2.30909 2.71370 2.93031 3.08433 3.09540 3.15286 3.60524 3.80499 3.87077 4.03108 4.09183 4.12918 4.15906 4.19733 4.27366 4.32558 4.38996 4.39091 4.43159 4.53980 4.63185 4.69708 4.74295 4.78979 4.84512 4.89437 5.03012 5.08110 5.14073 5.18690 5.20778 5.33552 5.34286 5.37330 5.39883 5.43937 5.59382 5.90102 5.92858 6.12278 6.20988 6.41733 6.48224 7.01729 7.06398 7.42082 7.92142 8.64826 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.001793 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.275166 B =15611.325402 C =16181.001163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.518 5.518 4 C 0.096 3.904 5 C -0.044 4.044 6 C -0.107 4.107 7 C -0.067 4.067 8 C -0.149 4.149 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.120 3.880 13 C 0.432 3.568 14 O -0.624 6.624 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.915 5.915 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.089 4.089 25 C -0.107 4.107 26 C 0.007 3.993 27 C -0.167 4.167 28 C -0.168 4.168 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.413 0.587 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.128 0.872 44 H 0.145 0.855 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -26.350 -14.768 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 N -0.243 5.243 4 C -0.031 4.031 5 C -0.045 4.045 6 C -0.125 4.125 7 C -0.086 4.086 8 C -0.152 4.152 9 C 0.344 3.656 10 O -0.460 6.460 11 N -0.357 5.357 12 C -0.008 4.008 13 C 0.219 3.781 14 O -0.512 6.512 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.555 5.555 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.101 4.101 27 C -0.205 4.205 28 C -0.206 4.206 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.233 0.767 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.163 0.837 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.123 0.877 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.580 -25.941 -14.496 30.668 hybrid contribution 0.541 0.656 0.348 0.919 sum -7.040 -25.285 -14.148 29.817 Atomic orbital electron populations 1.21969 0.94741 1.01886 1.02234 1.22091 0.96450 0.87331 1.01365 1.61842 1.17409 1.18245 1.26810 1.21112 0.88088 0.91784 1.02103 1.20096 0.95141 0.96322 0.92917 1.21093 0.98968 0.92834 0.99609 1.21237 0.96522 0.95569 0.95305 1.19782 1.06626 0.92264 0.96574 1.18751 0.77352 0.87813 0.81637 1.90719 1.47953 1.64311 1.43061 1.45651 1.65331 1.12675 1.12077 1.20816 1.02496 0.84044 0.93407 1.20356 0.84277 0.83266 0.90188 1.90464 1.52163 1.50392 1.58161 1.41830 1.55808 1.10738 1.10896 1.19713 1.42692 0.97717 0.86663 0.89497 1.26151 0.95718 0.94856 1.04424 1.69678 1.42882 1.05569 1.37359 0.84911 0.78926 0.77503 0.76545 1.19449 1.19606 1.19479 1.21461 0.96400 0.94956 0.98003 1.21140 0.99321 0.94162 0.97941 1.22396 0.98147 0.98213 0.91363 1.22910 1.04166 0.91161 1.02284 1.23277 0.92811 1.02163 1.02304 0.91525 0.92966 0.91984 0.94069 0.90033 0.92412 0.88266 0.83877 0.85386 0.74771 0.88609 0.88657 0.76677 0.91038 0.85401 0.83676 0.88964 0.90419 0.88810 0.87692 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.62 71.98 0.62 -0.82 16 2 C 0.05 0.52 5.70 86.30 0.49 1.02 16 3 N -0.52 -6.53 4.59 -875.48 -4.02 -10.56 16 4 C 0.10 1.12 5.10 85.56 0.44 1.55 16 5 C -0.04 -0.72 4.77 -19.81 -0.09 -0.81 16 6 C -0.11 -1.86 7.94 22.23 0.18 -1.68 16 7 C -0.07 -1.58 9.60 22.53 0.22 -1.37 16 8 C -0.15 -4.09 5.87 -20.09 -0.12 -4.21 16 9 C 0.56 18.97 7.77 86.78 0.67 19.64 16 10 O -0.58 -22.86 16.35 -3.89 -0.06 -22.92 16 11 N -0.70 -24.72 5.48 -469.72 -2.57 -27.29 16 12 C 0.12 4.56 6.15 85.63 0.53 5.09 16 13 C 0.43 20.30 7.85 87.66 0.69 20.99 16 14 O -0.62 -32.56 15.24 -3.05 -0.05 -32.61 16 15 N -0.56 -28.30 5.29 -307.00 -1.62 -29.92 16 16 C -0.34 -18.75 9.68 84.04 0.81 -17.94 16 17 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 19 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 20 Si 1.00 41.85 29.55 68.60 2.03 43.88 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 C -0.09 -2.11 9.54 22.53 0.21 -1.89 16 25 C -0.11 -2.00 9.68 22.23 0.22 -1.79 16 26 C 0.01 0.09 3.90 44.92 0.18 0.27 16 27 C -0.17 -2.62 9.08 30.59 0.28 -2.35 16 28 C -0.17 -2.06 8.66 30.60 0.26 -1.80 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.65 8.04 -2.39 -0.02 0.63 16 31 H 0.06 0.58 5.73 -2.39 -0.01 0.57 16 32 H 0.04 0.36 8.04 -2.39 -0.02 0.34 16 33 H 0.08 0.66 7.80 -2.39 -0.02 0.64 16 34 H 0.06 0.55 8.06 -2.39 -0.02 0.54 16 35 H 0.10 0.93 7.80 -2.39 -0.02 0.91 16 36 H 0.14 1.84 8.01 -2.91 -0.02 1.82 16 37 H 0.13 3.10 7.65 -2.91 -0.02 3.08 16 38 H 0.41 14.19 5.47 -92.71 -0.51 13.68 16 39 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 42 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.13 3.00 6.41 -2.91 -0.02 2.98 16 44 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.10 1.32 5.92 -2.39 -0.01 1.31 16 Total: -1.00 -66.89 403.65 -0.23 -67.12 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -0.26 Total: 47.01 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.05 Total: 13.81 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -7.94 Total: -116.28 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -0.11 Total: -55.53 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -66.89 -0.23 -67.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.915 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds