Wall clock time and date at job start Wed Apr 1 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47199 * 2 1 4 4 C 1.46502 * 120.00137 * 270.00106 * 3 2 1 5 5 C 1.50702 * 109.47135 * 269.99995 * 4 3 2 6 6 H 1.08000 * 119.99757 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99562 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00665 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99532 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47109 * 59.99857 * 9 7 5 11 11 H 1.48498 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47305 * 300.00243 * 9 7 5 13 13 C 1.34775 * 120.00183 * 89.99812 * 3 2 1 14 14 O 1.21280 * 120.00397 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99695 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46795 * 185.98049 * 15 13 3 17 17 C 1.48237 * 110.99772 * 176.59375 * 16 15 13 18 18 C 1.51311 * 104.86284 * 267.45922 * 17 16 15 19 19 O 1.21283 * 125.74801 * 163.20581 * 18 17 16 20 20 N 1.34851 * 108.50164 * 343.18174 * 18 17 16 21 21 C 1.46502 * 125.20070 * 179.60826 * 20 18 17 22 22 C 1.50703 * 109.47055 * 89.97865 * 21 20 18 23 23 C 1.38234 * 119.99626 * 269.72243 * 22 21 20 24 24 C 1.38235 * 119.99872 * 179.76818 * 23 22 21 25 25 C 1.38238 * 119.99782 * 0.50184 * 24 23 22 26 26 C 1.38234 * 120.00074 * 359.75347 * 25 24 23 27 27 C 1.38233 * 119.99968 * 359.97438 * 26 25 24 28 28 C 1.46799 * 109.58798 * 359.57261 * 20 18 17 29 29 H 1.09000 * 109.46976 * 299.99770 * 1 2 3 30 30 H 1.08994 * 109.47190 * 60.00250 * 1 2 3 31 31 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47026 * 239.99687 * 2 1 3 33 33 H 1.09002 * 109.47137 * 120.00103 * 2 1 3 34 34 H 1.09003 * 109.46855 * 29.99753 * 4 3 2 35 35 H 1.09001 * 109.47070 * 149.99693 * 4 3 2 36 36 H 0.97002 * 119.99889 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46792 * 65.98262 * 15 13 3 38 38 H 1.08998 * 109.47119 * 305.98068 * 15 13 3 39 39 H 1.09005 * 110.38178 * 148.57947 * 17 16 15 40 40 H 1.08994 * 110.38129 * 26.33887 * 17 16 15 41 41 H 1.09008 * 109.46692 * 209.97277 * 21 20 18 42 42 H 1.08990 * 109.47602 * 329.97428 * 21 20 18 43 43 H 1.08001 * 120.00362 * 359.97438 * 23 22 21 44 44 H 1.07997 * 120.00717 * 180.23182 * 24 23 22 45 45 H 1.08004 * 119.99852 * 179.72252 * 25 24 23 46 46 H 1.08000 * 119.99907 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99936 * 179.97438 * 27 26 25 48 48 H 1.09003 * 110.11462 * 136.77108 * 28 20 18 49 49 H 1.08999 * 110.11786 * 258.36442 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 3.3488 3.1249 -3.6186 9 14 5.9135 2.0967 -3.4169 10 1 6.1417 0.6399 -3.5936 11 1 6.1606 2.7956 -4.7036 12 1 6.8406 2.6209 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.1721 2.2479 3.5851 17 6 1.8541 1.6046 4.8822 18 6 0.3921 1.9136 5.1205 19 8 -0.3327 1.3453 5.9095 20 7 0.0311 2.9275 4.3081 21 6 -1.3095 3.5136 4.2336 22 6 -1.4167 4.6492 5.2186 23 6 -1.8520 4.4068 6.5080 24 6 -1.9458 5.4476 7.4129 25 6 -1.6141 6.7324 7.0253 26 6 -1.1839 6.9756 5.7344 27 6 -1.0847 5.9339 4.8311 28 6 1.1871 3.3546 3.5104 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4449 37 1 2.6964 0.4804 2.5776 38 1 0.9736 0.9184 2.4852 39 1 2.4665 2.0302 5.6773 40 1 2.0092 0.5276 4.8200 41 1 -1.4864 3.8891 3.2256 42 1 -2.0524 2.7532 4.4736 43 1 -2.1157 3.4038 6.8094 44 1 -2.2823 5.2578 8.4214 45 1 -1.6917 7.5463 7.7311 46 1 -0.9252 7.9795 5.4315 47 1 -0.7490 6.1240 3.8224 48 1 0.8878 3.5204 2.4755 49 1 1.6141 4.2666 3.9275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343890767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:22 Heat of formation + Delta-G solvation = -12.609581 kcal Electronic energy + Delta-G solvation = -30609.695604 eV Core-core repulsion = 26537.613510 eV Total energy + Delta-G solvation = -4072.082094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.09308 -39.41402 -38.94893 -37.01052 -35.36985 -34.74591 -32.85913 -31.64036 -31.10056 -30.19849 -29.31740 -27.72532 -26.94449 -25.85728 -23.35397 -23.06561 -22.75108 -21.87960 -21.78559 -19.98720 -18.45751 -17.34720 -16.98013 -16.61511 -16.53143 -16.27706 -15.91184 -15.56089 -15.33220 -15.03569 -14.83920 -14.41115 -14.25431 -13.97679 -13.79683 -13.61257 -13.48036 -13.32240 -12.92704 -12.81375 -12.73447 -12.46775 -12.28513 -12.18159 -12.00899 -11.78107 -11.62911 -11.46951 -11.24809 -11.19486 -10.96508 -10.79590 -10.57192 -10.42873 -10.16514 -9.69017 -9.13087 -9.12283 -9.04115 -8.91028 -8.75528 -8.46282 -7.74548 -6.07650 -4.12408 1.03267 1.20091 2.34852 2.75945 3.26626 3.30591 3.34964 3.37615 3.40990 3.65096 3.96611 4.22869 4.42269 4.52753 4.56686 4.75874 4.79379 4.83921 4.92328 4.97002 5.14286 5.23091 5.25742 5.26995 5.30063 5.33740 5.40431 5.43601 5.45894 5.54770 5.58576 5.67590 5.75132 5.83055 5.93276 6.01633 6.14991 6.16518 6.23973 6.29687 6.37350 6.39141 6.60576 6.77659 6.95850 7.01184 7.37026 7.47423 7.88384 7.92483 8.19086 8.32319 8.84619 9.00362 9.52922 11.00403 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.002592 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.301653 B =10797.934557 C =11559.877152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.015 3.985 16 N -0.475 5.475 17 C 0.004 3.996 18 C 0.494 3.506 19 O -0.527 6.527 20 N -0.635 5.635 21 C 0.172 3.828 22 C -0.110 4.110 23 C -0.097 4.097 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.101 4.101 28 C 0.254 3.746 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.097 0.903 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 -0.160 18.005 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.116 4.116 16 N -0.199 5.199 17 C -0.127 4.127 18 C 0.280 3.720 19 O -0.403 6.403 20 N -0.372 5.372 21 C 0.050 3.950 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.143 4.143 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.120 4.120 28 C 0.043 3.957 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.115 0.885 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.595 0.465 18.125 21.000 hybrid contribution 0.217 -0.458 -0.431 0.665 sum -10.378 0.008 17.694 20.513 Atomic orbital electron populations 1.22218 0.96796 1.01526 1.02141 1.21429 0.93452 0.84229 1.02786 1.48274 1.63624 1.13280 1.07661 1.19269 0.96340 0.93538 0.77905 1.21380 0.96859 1.32042 1.06265 0.92484 1.24923 0.97853 0.94881 0.96374 1.69916 1.35750 1.33422 1.14339 0.86563 0.84804 0.78251 0.77835 1.20270 1.21206 1.20110 1.19946 0.79120 0.87149 0.84598 1.90691 1.44786 1.17756 1.86802 1.22508 1.01922 0.96148 0.91011 1.65556 1.44979 1.08741 1.00627 1.23200 0.92961 1.02401 0.94153 1.21605 0.91031 0.79497 0.79859 1.90706 1.59278 1.54123 1.36166 1.49115 1.11214 1.35177 1.41720 1.20204 0.82668 0.93656 0.98432 1.20212 1.00598 0.94819 0.95510 1.21150 0.98274 0.99327 0.92816 1.21155 1.00616 0.92973 0.99528 1.21195 0.99081 0.96895 0.96336 1.21164 1.00010 0.99174 0.93739 1.21132 0.98716 0.92196 0.99957 1.23306 0.80417 0.94871 0.97104 0.93421 0.91919 0.92070 0.89698 0.91871 0.95020 0.93903 0.92649 0.87285 0.91961 0.85869 0.87322 0.89114 0.89197 0.85821 0.86131 0.86167 0.85907 0.85763 0.88542 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.18 37.16 0.38 -1.74 16 2 C 0.11 1.57 5.85 -4.04 -0.02 1.54 16 3 N -0.60 -11.69 2.46 -175.05 -0.43 -12.12 16 4 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16 5 C -0.53 -14.46 9.39 -34.44 -0.32 -14.78 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 9.62 6.90 -10.98 -0.08 9.54 16 14 O -0.52 -12.04 14.42 5.56 0.08 -11.96 16 15 C 0.02 0.21 3.66 -4.97 -0.02 0.19 16 16 N -0.48 -6.35 5.35 -238.41 -1.28 -7.63 16 17 C 0.00 0.04 6.73 -3.94 -0.03 0.02 16 18 C 0.49 6.35 8.09 -10.65 -0.09 6.26 16 19 O -0.53 -8.16 17.74 5.55 0.10 -8.06 16 20 N -0.64 -7.55 2.95 -177.24 -0.52 -8.07 16 21 C 0.17 1.80 6.16 -5.19 -0.03 1.77 16 22 C -0.11 -1.17 5.46 -104.62 -0.57 -1.74 16 23 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 28 C 0.25 3.32 6.48 -61.38 -0.40 2.92 16 29 H 0.05 0.58 7.12 -51.93 -0.37 0.21 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.77 6.61 -51.93 -0.34 0.43 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.11 1.33 7.70 -51.93 -0.40 0.93 16 38 H 0.06 0.77 6.82 -51.93 -0.35 0.42 16 39 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.11 1.01 7.80 -51.93 -0.41 0.61 16 41 H 0.09 0.83 8.09 -51.92 -0.42 0.41 16 42 H 0.09 0.94 7.96 -51.93 -0.41 0.52 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 48 H 0.10 1.43 6.09 -51.93 -0.32 1.11 16 49 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -33.63 406.87 -11.06 -44.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.60 Total: 1.43 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.26 Total: 4.41 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -1.49 Total: -53.11 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.63 -11.06 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343890767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.084 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds