Wall clock time and date at job start Wed Apr 1 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47199 * 2 1 4 4 C 1.46502 * 120.00137 * 270.00106 * 3 2 1 5 5 C 1.50702 * 109.47135 * 269.99995 * 4 3 2 6 6 H 1.08000 * 119.99757 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99562 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00665 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99532 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47109 * 59.99857 * 9 7 5 11 11 H 1.48498 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47305 * 300.00243 * 9 7 5 13 13 C 1.34775 * 120.00183 * 89.99812 * 3 2 1 14 14 O 1.21280 * 120.00397 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99695 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46795 * 185.98049 * 15 13 3 17 17 C 1.48237 * 110.99772 * 176.59375 * 16 15 13 18 18 C 1.51311 * 104.86284 * 267.45922 * 17 16 15 19 19 O 1.21283 * 125.74801 * 163.20581 * 18 17 16 20 20 N 1.34851 * 108.50164 * 343.18174 * 18 17 16 21 21 C 1.46502 * 125.20070 * 179.60826 * 20 18 17 22 22 C 1.50703 * 109.47055 * 89.97865 * 21 20 18 23 23 C 1.38234 * 119.99626 * 269.72243 * 22 21 20 24 24 C 1.38235 * 119.99872 * 179.76818 * 23 22 21 25 25 C 1.38238 * 119.99782 * 0.50184 * 24 23 22 26 26 C 1.38234 * 120.00074 * 359.75347 * 25 24 23 27 27 C 1.38233 * 119.99968 * 359.97438 * 26 25 24 28 28 C 1.46799 * 109.58798 * 359.57261 * 20 18 17 29 29 H 1.09000 * 109.46976 * 299.99770 * 1 2 3 30 30 H 1.08994 * 109.47190 * 60.00250 * 1 2 3 31 31 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47026 * 239.99687 * 2 1 3 33 33 H 1.09002 * 109.47137 * 120.00103 * 2 1 3 34 34 H 1.09003 * 109.46855 * 29.99753 * 4 3 2 35 35 H 1.09001 * 109.47070 * 149.99693 * 4 3 2 36 36 H 0.97002 * 119.99889 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46792 * 65.98262 * 15 13 3 38 38 H 1.08998 * 109.47119 * 305.98068 * 15 13 3 39 39 H 1.09005 * 110.38178 * 148.57947 * 17 16 15 40 40 H 1.08994 * 110.38129 * 26.33887 * 17 16 15 41 41 H 1.09008 * 109.46692 * 209.97277 * 21 20 18 42 42 H 1.08990 * 109.47602 * 329.97428 * 21 20 18 43 43 H 1.08001 * 120.00362 * 359.97438 * 23 22 21 44 44 H 1.07997 * 120.00717 * 180.23182 * 24 23 22 45 45 H 1.08004 * 119.99852 * 179.72252 * 25 24 23 46 46 H 1.08000 * 119.99907 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99936 * 179.97438 * 27 26 25 48 48 H 1.09003 * 110.11462 * 136.77108 * 28 20 18 49 49 H 1.08999 * 110.11786 * 258.36442 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 3.3488 3.1249 -3.6186 9 14 5.9135 2.0967 -3.4169 10 1 6.1417 0.6399 -3.5936 11 1 6.1606 2.7956 -4.7036 12 1 6.8406 2.6209 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.1721 2.2479 3.5851 17 6 1.8541 1.6046 4.8822 18 6 0.3921 1.9136 5.1205 19 8 -0.3327 1.3453 5.9095 20 7 0.0311 2.9275 4.3081 21 6 -1.3095 3.5136 4.2336 22 6 -1.4167 4.6492 5.2186 23 6 -1.8520 4.4068 6.5080 24 6 -1.9458 5.4476 7.4129 25 6 -1.6141 6.7324 7.0253 26 6 -1.1839 6.9756 5.7344 27 6 -1.0847 5.9339 4.8311 28 6 1.1871 3.3546 3.5104 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4449 37 1 2.6964 0.4804 2.5776 38 1 0.9736 0.9184 2.4852 39 1 2.4665 2.0302 5.6773 40 1 2.0092 0.5276 4.8200 41 1 -1.4864 3.8891 3.2256 42 1 -2.0524 2.7532 4.4736 43 1 -2.1157 3.4038 6.8094 44 1 -2.2823 5.2578 8.4214 45 1 -1.6917 7.5463 7.7311 46 1 -0.9252 7.9795 5.4315 47 1 -0.7490 6.1240 3.8224 48 1 0.8878 3.5204 2.4755 49 1 1.6141 4.2666 3.9275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343890767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:21 Heat of formation + Delta-G solvation = -33.739622 kcal Electronic energy + Delta-G solvation = -30610.611872 eV Core-core repulsion = 26537.613510 eV Total energy + Delta-G solvation = -4072.998361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.13038 -40.59578 -39.96625 -38.14054 -36.89261 -35.70390 -34.87411 -32.56754 -31.83594 -31.63795 -30.44651 -29.07829 -28.19499 -27.00904 -24.98696 -24.27919 -23.59129 -23.10972 -22.59408 -20.95532 -19.89787 -18.59693 -18.26715 -18.02080 -17.66076 -17.56598 -17.01776 -16.80111 -16.41744 -16.18666 -15.89628 -15.77083 -15.44886 -15.21603 -14.75475 -14.74126 -14.51261 -14.34128 -14.21530 -13.99493 -13.78096 -13.59351 -13.41759 -13.34549 -13.20977 -13.11229 -13.05423 -12.79628 -12.64533 -12.50295 -12.22144 -12.14897 -11.92471 -11.87753 -11.70928 -11.45574 -10.61570 -10.56514 -10.02027 -9.87498 -9.83120 -9.76024 -9.41574 -8.20008 -6.34073 0.27269 0.44862 1.36228 1.38894 1.42669 1.49654 1.81972 1.83287 2.13690 2.41244 2.74995 2.88764 3.10030 3.28454 3.52833 3.74205 3.77800 3.90106 4.04448 4.09755 4.13476 4.22693 4.24334 4.26353 4.40201 4.42478 4.47782 4.51156 4.57705 4.60672 4.62299 4.69893 4.89754 4.97249 5.01348 5.03448 5.06687 5.11529 5.17035 5.24819 5.36063 5.51435 5.56960 5.58194 5.60035 5.63819 5.87633 5.99146 6.05274 6.09226 6.72791 6.81171 6.94101 7.31051 7.49547 8.86660 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.002592 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.301653 B =10797.934557 C =11559.877152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.602 5.602 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.500 3.500 14 O -0.573 6.573 15 C 0.031 3.969 16 N -0.489 5.489 17 C 0.012 3.988 18 C 0.491 3.509 19 O -0.555 6.555 20 N -0.630 5.630 21 C 0.170 3.830 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.114 4.114 28 C 0.263 3.737 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.020 0.980 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.139 0.861 45 H 0.145 0.855 46 H 0.140 0.860 47 H 0.126 0.874 48 H 0.075 0.925 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 -1.504 19.635 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.334 5.334 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.100 4.100 16 N -0.213 5.213 17 C -0.118 4.118 18 C 0.279 3.721 19 O -0.433 6.433 20 N -0.366 5.366 21 C 0.049 3.951 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.132 4.132 28 C 0.052 3.948 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.038 0.962 35 H 0.017 0.983 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.101 0.899 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.144 0.856 48 H 0.093 0.907 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.088 -0.916 19.767 22.211 hybrid contribution -0.007 0.017 -0.910 0.910 sum -10.095 -0.899 18.857 21.408 Atomic orbital electron populations 1.22138 0.94915 1.03359 1.01372 1.21740 0.94970 0.81534 1.04092 1.48263 1.63891 1.15052 1.06228 1.18672 0.95124 0.91568 0.80239 1.21684 0.97916 1.31859 1.06381 0.92758 1.25815 1.02145 0.94573 0.96526 1.70038 1.37728 1.34332 1.14782 0.85522 0.79381 0.78950 0.77299 1.18566 1.20616 1.20271 1.20854 0.77690 0.86739 0.85951 1.90663 1.46878 1.20078 1.87661 1.22418 1.03755 0.95911 0.87910 1.65564 1.45220 1.08986 1.01507 1.23315 0.91583 1.03874 0.93033 1.21912 0.91687 0.79181 0.79337 1.90697 1.60163 1.55104 1.37367 1.49148 1.11347 1.34919 1.41166 1.20294 0.82022 0.93766 0.99031 1.20228 1.01286 0.95008 0.95605 1.21203 0.99138 0.99464 0.93241 1.21426 1.00195 0.92943 1.00186 1.21518 0.98115 0.97388 0.96617 1.21458 0.99538 0.99792 0.93871 1.21270 0.99128 0.92378 1.00452 1.23067 0.80745 0.95070 0.95939 0.92782 0.94124 0.88842 0.90774 0.88142 0.96208 0.98283 0.92498 0.84547 0.89926 0.84269 0.84850 0.88340 0.89279 0.86620 0.84331 0.83713 0.84169 0.85556 0.90655 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.18 71.98 0.73 -2.98 16 2 C 0.10 2.78 5.85 86.38 0.51 3.28 16 3 N -0.60 -23.75 2.46 -826.13 -2.03 -25.78 16 4 C 0.27 13.75 5.16 85.63 0.44 14.19 16 5 C -0.54 -30.24 9.39 25.60 0.24 -29.99 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 9 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.50 18.91 6.90 87.66 0.61 19.52 16 14 O -0.57 -27.17 14.42 -3.03 -0.04 -27.22 16 15 C 0.03 0.77 3.66 85.56 0.31 1.09 16 16 N -0.49 -12.21 5.35 -908.19 -4.86 -17.07 16 17 C 0.01 0.23 6.73 85.49 0.58 0.81 16 18 C 0.49 11.88 8.09 87.84 0.71 12.59 16 19 O -0.56 -16.54 17.74 -3.04 -0.05 -16.59 16 20 N -0.63 -14.56 2.95 -833.00 -2.46 -17.01 16 21 C 0.17 3.56 6.16 85.63 0.53 4.09 16 22 C -0.12 -2.54 5.46 -19.87 -0.11 -2.65 16 23 C -0.11 -2.36 9.70 22.27 0.22 -2.14 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 26 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 27 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 28 C 0.26 6.80 6.48 170.13 1.10 7.90 16 29 H 0.05 1.19 7.12 -2.39 -0.02 1.17 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.08 6.61 -2.39 -0.02 2.07 16 34 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 35 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.14 2.75 7.70 -2.39 -0.02 2.73 16 38 H 0.08 1.78 6.82 -2.39 -0.02 1.77 16 39 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.13 1.93 7.80 -2.39 -0.02 1.91 16 41 H 0.10 1.85 8.09 -2.38 -0.02 1.83 16 42 H 0.09 1.87 7.96 -2.39 -0.02 1.85 16 43 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 46 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 48 H 0.08 2.30 6.09 -2.39 -0.01 2.29 16 49 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -75.63 406.87 1.02 -74.62 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.94 Total: 19.07 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 7.21 Total: 18.84 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -9.06 Total: -114.94 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.10 Total: -43.81 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -75.63 1.02 -74.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343890767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.876 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds