Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47349 * 2 1 4 4 C 1.35964 * 116.99889 * 180.02562 * 3 2 1 5 5 C 1.38723 * 119.98470 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.01294 * 180.02562 * 5 4 3 7 7 C 1.38846 * 119.98902 * 359.97438 * 6 5 4 8 8 N 1.40109 * 120.01572 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00024 * 239.52195 * 8 7 6 10 10 C 1.52991 * 109.47406 * 89.99957 * 9 8 7 11 11 C 1.47198 * 109.47643 * 179.97438 * 10 9 8 12 12 N 9.44549 * 151.84820 * 291.15037 * 2 1 3 13 13 C 1.34773 * 119.99979 * 59.52032 * 8 7 6 14 14 O 1.21301 * 119.99967 * 4.94844 * 13 8 7 15 15 C 1.50701 * 120.00106 * 184.95014 * 13 8 7 16 16 N 1.46495 * 109.47119 * 180.02562 * 15 13 8 17 17 C 1.36940 * 120.00327 * 89.99717 * 16 15 13 18 18 H 1.08001 * 119.99852 * 159.75421 * 17 16 15 19 19 C 1.38810 * 119.99726 * 339.76245 * 17 16 15 20 20 N 1.31608 * 120.00162 * 6.16224 * 19 17 16 21 21 Si 1.86803 * 119.99823 * 186.16738 * 19 17 16 22 22 H 1.48500 * 109.47392 * 59.99529 * 21 19 17 23 23 H 1.48491 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46812 * 300.00001 * 21 19 17 25 25 C 1.46499 * 120.00164 * 269.99782 * 16 15 13 26 26 C 1.53004 * 109.47417 * 85.92980 * 25 16 15 27 27 C 1.38848 * 119.96710 * 0.27474 * 7 6 5 28 28 C 1.38088 * 119.98639 * 359.47147 * 27 7 6 29 29 H 1.08994 * 109.47007 * 59.99754 * 1 2 3 30 30 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46557 * 300.00089 * 1 2 3 32 32 H 1.09003 * 109.46557 * 239.99911 * 2 1 3 33 33 H 1.08994 * 109.47007 * 120.00246 * 2 1 3 34 34 H 1.08004 * 119.99282 * 0.02562 * 5 4 3 35 35 H 1.08006 * 120.00333 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46933 * 210.00359 * 9 8 7 37 37 H 1.09004 * 109.46975 * 329.99448 * 9 8 7 38 38 H 1.09001 * 109.47403 * 300.00114 * 10 9 8 39 39 H 1.09004 * 109.47469 * 59.99793 * 10 9 8 40 40 H 1.08999 * 109.46685 * 299.99707 * 15 13 8 41 41 H 1.08998 * 109.47017 * 59.99894 * 15 13 8 42 42 H 0.97005 * 120.00308 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47725 * 205.93490 * 25 16 15 44 44 H 1.09006 * 109.47012 * 325.93330 * 25 16 15 45 45 H 1.09004 * 109.47089 * 300.00899 * 26 25 16 46 46 H 1.09006 * 109.46743 * 60.00185 * 26 25 16 47 47 H 1.08999 * 109.47320 * 180.02562 * 26 25 16 48 48 H 1.07994 * 120.00766 * 179.72301 * 27 7 6 49 49 H 1.08000 * 119.99549 * 180.23249 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8843 2.8073 0.0000 6 6 5.2533 2.9888 -0.0011 7 6 6.0993 1.8879 -0.0022 8 7 7.4883 2.0715 -0.0027 9 6 8.2983 1.5301 -1.0969 10 6 8.4171 2.5744 -2.2086 11 6 9.2314 2.0308 -3.3077 12 7 9.8582 1.6080 -4.1563 13 6 8.0793 2.7461 1.0033 14 8 7.4224 3.1163 1.9534 15 6 9.5563 3.0404 0.9477 16 7 9.9528 3.7778 2.1499 17 6 10.3630 3.0983 3.2658 18 1 10.9527 3.6013 4.0179 19 6 10.0210 1.7631 3.4302 20 7 9.4081 1.1167 2.4613 21 14 10.4304 0.8838 5.0266 22 1 9.7539 1.5693 6.1570 23 1 9.9629 -0.5235 4.9506 24 1 11.8996 0.9070 5.2417 25 6 9.9104 5.2421 2.1583 26 6 8.5040 5.7096 2.5382 27 6 5.5682 0.6051 -0.0079 28 6 4.1991 0.4249 -0.0015 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.2261 3.6636 0.0012 35 1 5.6657 3.9871 -0.0011 36 1 9.2920 1.2811 -0.7245 37 1 7.8226 0.6321 -1.4912 38 1 7.4234 2.8234 -2.5810 39 1 8.8928 3.4724 -1.8143 40 1 10.1116 2.1039 0.8967 41 1 9.7741 3.6407 0.0644 42 1 9.1688 0.1837 2.5763 43 1 10.6284 5.6223 2.8850 44 1 10.1630 5.6186 1.1670 45 1 7.7860 5.3294 1.8114 46 1 8.2514 5.3331 3.5295 47 1 8.4724 6.7991 2.5440 48 1 6.2257 -0.2517 -0.0133 49 1 3.7859 -0.5729 -0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355657952.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = 18.300267 kcal Electronic energy + Delta-G solvation = -31163.219807 eV Core-core repulsion = 27092.478065 eV Total energy + Delta-G solvation = -4070.741742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.21832 -39.14952 -37.12896 -36.77276 -35.45617 -34.64069 -32.06180 -31.85963 -31.00073 -30.68964 -29.33972 -28.23827 -26.51502 -24.25672 -23.92740 -23.60468 -22.00494 -21.63948 -20.37463 -18.87231 -18.17873 -17.58044 -16.87174 -16.37245 -16.14001 -15.98484 -15.55453 -15.15762 -14.78762 -14.37332 -14.10552 -13.80025 -13.68401 -13.54838 -13.36257 -13.29264 -13.09781 -12.81325 -12.67138 -12.55710 -12.36764 -12.15935 -12.12037 -11.90763 -11.73799 -11.63990 -11.56234 -11.21438 -10.99946 -10.85323 -10.81369 -10.74936 -10.64179 -10.39199 -10.09877 -9.92759 -9.76131 -8.89120 -8.76386 -8.60390 -8.33166 -7.42534 -6.88641 -5.83916 -3.22787 1.58197 1.64659 2.76529 2.84342 3.22025 3.37924 3.43854 3.46346 3.56650 3.92390 4.07368 4.31403 4.50599 4.75314 4.79113 5.00215 5.03301 5.08068 5.10221 5.19994 5.31997 5.35879 5.46777 5.48568 5.57992 5.58864 5.64456 5.71712 5.82002 5.86993 6.02386 6.09170 6.13127 6.18344 6.26919 6.38105 6.45055 6.51929 6.62326 6.65987 6.81804 6.86760 6.98990 7.26373 7.35803 7.43967 7.60349 7.69547 7.70398 8.22123 8.37571 9.14472 9.57876 9.79586 10.22241 11.22464 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003794 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.210813 B = 7379.213179 C = 8705.763081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.109 3.891 5 C -0.140 4.140 6 C -0.075 4.075 7 C 0.139 3.861 8 N -0.583 5.583 9 C 0.127 3.873 10 C -0.051 4.051 11 C 0.217 3.783 12 N -0.445 5.445 13 C 0.534 3.466 14 O -0.512 6.512 15 C 0.165 3.835 16 N -0.578 5.578 17 C -0.237 4.237 18 H 0.074 0.926 19 C 0.006 3.994 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.143 3.857 26 C -0.160 4.160 27 C -0.092 4.092 28 C -0.196 4.196 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.028 0.972 42 H 0.254 0.746 43 H 0.047 0.953 44 H 0.033 0.967 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.025 0.975 48 H 0.125 0.875 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 -0.103 -9.239 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.064 3.936 5 C -0.159 4.159 6 C -0.095 4.095 7 C 0.047 3.953 8 N -0.315 5.315 9 C 0.001 3.999 10 C -0.093 4.093 11 C -0.101 4.101 12 N -0.122 5.122 13 C 0.323 3.677 14 O -0.384 6.384 15 C 0.035 3.965 16 N -0.298 5.298 17 C -0.366 4.366 18 H 0.092 0.908 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.212 1.212 25 C 0.017 3.983 26 C -0.220 4.220 27 C -0.112 4.112 28 C -0.216 4.216 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.143 0.857 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.789 -0.504 -9.870 14.632 hybrid contribution -0.310 -0.867 1.382 1.660 sum -11.099 -1.371 -8.488 14.040 Atomic orbital electron populations 1.21767 0.93067 1.02616 1.03394 1.22710 0.95553 0.82475 1.01299 1.86041 1.19446 1.28754 1.89256 1.18883 0.81843 0.94159 0.98737 1.20211 0.94701 0.94566 1.06398 1.20966 0.91777 0.98783 0.98019 1.17628 0.84576 0.92230 1.00882 1.46042 1.02910 1.58723 1.23839 1.21296 0.98312 0.94275 0.85973 1.19917 0.98631 1.00856 0.89873 1.29079 0.93533 0.93411 0.94040 1.81228 1.10284 1.09152 1.11544 1.22526 0.91230 0.74258 0.79646 1.90557 1.65492 1.51538 1.30774 1.20907 0.90000 0.98537 0.87040 1.43848 1.74534 0.99843 1.11593 1.19252 1.25675 0.93408 0.98236 0.90789 1.24833 0.98834 0.97530 0.97826 1.69593 1.45495 1.10116 1.31071 0.86214 0.77500 0.78406 0.83661 1.21228 1.21767 1.21227 1.20892 0.94972 0.84568 0.97880 1.22329 0.99982 0.96942 1.02742 1.21007 0.94237 0.96842 0.99078 1.21004 0.93865 0.97676 1.09033 0.91645 0.90601 0.91588 0.92245 0.92180 0.85511 0.85506 0.88280 0.90555 0.87331 0.86840 0.85763 0.95469 0.93476 0.93439 0.94861 0.92958 0.92871 0.95573 0.85711 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.53 5.46 37.16 0.20 0.73 16 3 O -0.32 -4.21 10.14 -19.63 -0.20 -4.41 16 4 C 0.11 1.55 6.69 -39.22 -0.26 1.29 16 5 C -0.14 -2.03 9.98 -39.46 -0.39 -2.42 16 6 C -0.08 -1.18 9.09 -39.41 -0.36 -1.53 16 7 C 0.14 2.27 5.07 -83.62 -0.42 1.84 16 8 N -0.58 -9.69 2.57 -113.41 -0.29 -9.98 16 9 C 0.13 1.64 5.06 -4.05 -0.02 1.62 16 10 C -0.05 -0.52 6.02 -29.52 -0.18 -0.69 16 11 C 0.22 2.61 15.44 -20.74 -0.32 2.29 16 12 N -0.44 -6.54 18.54 42.17 0.78 -5.76 16 13 C 0.53 11.13 5.22 -10.99 -0.06 11.07 16 14 O -0.51 -12.87 13.33 5.54 0.07 -12.79 16 15 C 0.17 3.44 4.14 -5.20 -0.02 3.42 16 16 N -0.58 -13.47 2.10 -174.61 -0.37 -13.84 16 17 C -0.24 -6.15 9.71 -15.06 -0.15 -6.30 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.01 0.15 5.40 -17.44 -0.09 0.05 16 20 N -0.91 -23.78 8.24 55.49 0.46 -23.32 16 21 Si 0.91 21.63 29.56 -169.99 -5.02 16.61 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.14 2.85 6.43 -4.04 -0.03 2.82 16 26 C -0.16 -3.16 9.30 37.16 0.35 -2.82 16 27 C -0.09 -1.39 9.36 -39.41 -0.37 -1.76 16 28 C -0.20 -2.71 9.03 -39.45 -0.36 -3.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 33 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.10 1.40 6.48 -51.93 -0.34 1.07 16 37 H 0.08 0.88 7.52 -51.93 -0.39 0.49 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 1.09 6.94 -51.93 -0.36 0.72 16 40 H 0.13 2.82 5.24 -51.93 -0.27 2.54 16 41 H 0.03 0.48 6.73 -51.93 -0.35 0.13 16 42 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.05 0.92 7.98 -51.93 -0.41 0.51 16 44 H 0.03 0.58 7.95 -51.93 -0.41 0.17 16 45 H 0.05 1.08 6.40 -51.93 -0.33 0.75 16 46 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.12 1.80 7.96 -52.49 -0.42 1.38 16 49 H 0.12 1.40 6.29 -52.49 -0.33 1.07 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -32.04 403.35 -7.92 -39.96 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.34 Total: 1.62 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.10 Total: 5.81 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.58 Total: -52.89 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.13 Total: -17.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.04 -7.92 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355657952.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.265 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds