Wall clock time and date at job start Wed Apr 1 2020 04:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47349 * 2 1 4 4 C 1.35964 * 116.99889 * 180.02562 * 3 2 1 5 5 C 1.38723 * 119.98470 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.01294 * 180.02562 * 5 4 3 7 7 C 1.38846 * 119.98902 * 359.97438 * 6 5 4 8 8 N 1.40109 * 120.01572 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00024 * 239.52195 * 8 7 6 10 10 C 1.52991 * 109.47406 * 89.99957 * 9 8 7 11 11 C 1.47198 * 109.47643 * 179.97438 * 10 9 8 12 12 N 9.44549 * 151.84820 * 291.15037 * 2 1 3 13 13 C 1.34773 * 119.99979 * 59.52032 * 8 7 6 14 14 O 1.21301 * 119.99967 * 4.94844 * 13 8 7 15 15 C 1.50701 * 120.00106 * 184.95014 * 13 8 7 16 16 N 1.46495 * 109.47119 * 180.02562 * 15 13 8 17 17 C 1.36940 * 120.00327 * 89.99717 * 16 15 13 18 18 H 1.08001 * 119.99852 * 159.75421 * 17 16 15 19 19 C 1.38810 * 119.99726 * 339.76245 * 17 16 15 20 20 N 1.31608 * 120.00162 * 6.16224 * 19 17 16 21 21 Si 1.86803 * 119.99823 * 186.16738 * 19 17 16 22 22 H 1.48500 * 109.47392 * 59.99529 * 21 19 17 23 23 H 1.48491 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46812 * 300.00001 * 21 19 17 25 25 C 1.46499 * 120.00164 * 269.99782 * 16 15 13 26 26 C 1.53004 * 109.47417 * 85.92980 * 25 16 15 27 27 C 1.38848 * 119.96710 * 0.27474 * 7 6 5 28 28 C 1.38088 * 119.98639 * 359.47147 * 27 7 6 29 29 H 1.08994 * 109.47007 * 59.99754 * 1 2 3 30 30 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46557 * 300.00089 * 1 2 3 32 32 H 1.09003 * 109.46557 * 239.99911 * 2 1 3 33 33 H 1.08994 * 109.47007 * 120.00246 * 2 1 3 34 34 H 1.08004 * 119.99282 * 0.02562 * 5 4 3 35 35 H 1.08006 * 120.00333 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46933 * 210.00359 * 9 8 7 37 37 H 1.09004 * 109.46975 * 329.99448 * 9 8 7 38 38 H 1.09001 * 109.47403 * 300.00114 * 10 9 8 39 39 H 1.09004 * 109.47469 * 59.99793 * 10 9 8 40 40 H 1.08999 * 109.46685 * 299.99707 * 15 13 8 41 41 H 1.08998 * 109.47017 * 59.99894 * 15 13 8 42 42 H 0.97005 * 120.00308 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47725 * 205.93490 * 25 16 15 44 44 H 1.09006 * 109.47012 * 325.93330 * 25 16 15 45 45 H 1.09004 * 109.47089 * 300.00899 * 26 25 16 46 46 H 1.09006 * 109.46743 * 60.00185 * 26 25 16 47 47 H 1.08999 * 109.47320 * 180.02562 * 26 25 16 48 48 H 1.07994 * 120.00766 * 179.72301 * 27 7 6 49 49 H 1.08000 * 119.99549 * 180.23249 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8843 2.8073 0.0000 6 6 5.2533 2.9888 -0.0011 7 6 6.0993 1.8879 -0.0022 8 7 7.4883 2.0715 -0.0027 9 6 8.2983 1.5301 -1.0969 10 6 8.4171 2.5744 -2.2086 11 6 9.2314 2.0308 -3.3077 12 7 9.8582 1.6080 -4.1563 13 6 8.0793 2.7461 1.0033 14 8 7.4224 3.1163 1.9534 15 6 9.5563 3.0404 0.9477 16 7 9.9528 3.7778 2.1499 17 6 10.3630 3.0983 3.2658 18 1 10.9527 3.6013 4.0179 19 6 10.0210 1.7631 3.4302 20 7 9.4081 1.1167 2.4613 21 14 10.4304 0.8838 5.0266 22 1 9.7539 1.5693 6.1570 23 1 9.9629 -0.5235 4.9506 24 1 11.8996 0.9070 5.2417 25 6 9.9104 5.2421 2.1583 26 6 8.5040 5.7096 2.5382 27 6 5.5682 0.6051 -0.0079 28 6 4.1991 0.4249 -0.0015 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.2261 3.6636 0.0012 35 1 5.6657 3.9871 -0.0011 36 1 9.2920 1.2811 -0.7245 37 1 7.8226 0.6321 -1.4912 38 1 7.4234 2.8234 -2.5810 39 1 8.8928 3.4724 -1.8143 40 1 10.1116 2.1039 0.8967 41 1 9.7741 3.6407 0.0644 42 1 9.1688 0.1837 2.5763 43 1 10.6284 5.6223 2.8850 44 1 10.1630 5.6186 1.1670 45 1 7.7860 5.3294 1.8114 46 1 8.2514 5.3331 3.5295 47 1 8.4724 6.7991 2.5440 48 1 6.2257 -0.2517 -0.0133 49 1 3.7859 -0.5729 -0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355657952.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:30 Heat of formation + Delta-G solvation = 1.899666 kcal Electronic energy + Delta-G solvation = -31163.930991 eV Core-core repulsion = 27092.478065 eV Total energy + Delta-G solvation = -4071.452926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.40144 -40.38865 -38.45930 -37.83407 -36.99241 -36.03310 -33.69571 -32.89541 -32.08729 -31.72302 -30.94801 -29.61746 -28.08921 -25.51878 -25.19603 -24.81799 -23.28984 -22.64619 -21.95480 -20.28474 -19.19533 -18.66421 -18.54712 -17.75279 -17.25212 -16.98605 -16.95234 -16.68613 -15.87824 -15.74366 -15.42164 -15.38504 -15.06810 -14.60971 -14.57456 -14.39674 -14.20863 -14.17168 -13.80406 -13.71631 -13.62379 -13.44602 -13.26269 -13.06042 -12.92759 -12.85988 -12.81536 -12.66257 -12.56467 -12.53590 -12.27425 -11.99984 -11.81184 -11.76209 -11.64610 -11.56881 -11.36550 -10.71883 -10.10779 -9.91530 -9.85285 -8.72988 -8.59857 -7.78642 -5.16330 0.44444 0.48440 1.46600 1.51472 1.53935 1.75486 1.87850 2.25999 2.36867 2.46054 2.63825 2.84664 3.26617 3.43370 3.77567 3.89293 3.98435 4.08429 4.09056 4.16176 4.23541 4.37698 4.42550 4.46350 4.51405 4.53644 4.62835 4.70610 4.78599 4.82003 4.90650 4.92831 4.97135 5.04349 5.07876 5.12191 5.14147 5.16828 5.23755 5.37587 5.41285 5.55281 5.65493 5.68267 5.70735 5.78032 6.28264 6.43179 6.56069 6.64701 6.84381 7.25810 7.89124 8.10488 8.34370 9.22950 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003794 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.210813 B = 7379.213179 C = 8705.763081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.331 6.331 4 C 0.108 3.892 5 C -0.147 4.147 6 C -0.081 4.081 7 C 0.116 3.884 8 N -0.575 5.575 9 C 0.123 3.877 10 C -0.037 4.037 11 C 0.245 3.755 12 N -0.491 5.491 13 C 0.539 3.461 14 O -0.562 6.562 15 C 0.164 3.836 16 N -0.596 5.596 17 C -0.247 4.247 18 H 0.068 0.932 19 C -0.037 4.037 20 N -0.917 5.917 21 Si 0.955 3.045 22 H -0.298 1.298 23 H -0.298 1.298 24 H -0.276 1.276 25 C 0.139 3.861 26 C -0.146 4.146 27 C -0.099 4.099 28 C -0.194 4.194 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.244 0.756 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.128 0.872 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 0.005 -10.458 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.062 3.938 5 C -0.166 4.166 6 C -0.101 4.101 7 C 0.025 3.975 8 N -0.306 5.306 9 C -0.001 4.001 10 C -0.078 4.078 11 C -0.072 4.072 12 N -0.169 5.169 13 C 0.330 3.670 14 O -0.437 6.437 15 C 0.035 3.965 16 N -0.316 5.316 17 C -0.377 4.377 18 H 0.086 0.914 19 C -0.231 4.231 20 N -0.565 5.565 21 Si 0.786 3.214 22 H -0.225 1.225 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.013 3.987 26 C -0.205 4.205 27 C -0.119 4.119 28 C -0.213 4.213 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.146 0.854 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.838 -0.408 -11.147 16.265 hybrid contribution -0.088 -0.898 1.736 1.957 sum -11.926 -1.306 -9.411 15.248 Atomic orbital electron populations 1.21796 0.91385 1.04101 1.03195 1.23039 0.96950 0.81015 1.02062 1.86046 1.18600 1.31028 1.88952 1.19013 0.82627 0.94178 0.97952 1.20399 0.94548 0.95469 1.06168 1.20981 0.92254 0.98533 0.98337 1.17781 0.84213 0.93013 1.02508 1.45732 1.03523 1.57611 1.23719 1.21419 0.97229 0.95743 0.85712 1.19858 0.99767 0.99938 0.88250 1.29213 0.92444 0.92146 0.93403 1.81265 1.11896 1.10537 1.13189 1.22326 0.91083 0.74035 0.79577 1.90534 1.66458 1.53788 1.32927 1.20896 0.89865 0.98188 0.87583 1.44053 1.74823 1.01243 1.11486 1.19419 1.25457 0.93692 0.99094 0.91403 1.25342 0.99760 0.98343 0.99664 1.69764 1.46070 1.09367 1.31316 0.85519 0.77582 0.77028 0.81234 1.22515 1.22416 1.20207 1.21063 0.94947 0.82902 0.99745 1.22153 0.99529 0.98819 1.00022 1.21114 0.95025 0.96501 0.99274 1.21232 0.93246 0.98821 1.08023 0.91489 0.88268 0.92146 0.90832 0.91985 0.84224 0.85758 0.89612 0.89006 0.84886 0.85635 0.87742 0.91763 0.94577 0.93319 0.91659 0.94126 0.96610 0.92247 0.85362 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.04 0.75 5.46 71.98 0.39 1.14 16 3 O -0.33 -8.14 10.14 -93.15 -0.94 -9.09 16 4 C 0.11 2.92 6.69 22.50 0.15 3.07 16 5 C -0.15 -4.12 9.98 22.35 0.22 -3.90 16 6 C -0.08 -2.48 9.09 22.38 0.20 -2.27 16 7 C 0.12 3.71 5.07 38.11 0.19 3.90 16 8 N -0.58 -18.67 2.57 -631.12 -1.62 -20.29 16 9 C 0.12 3.01 5.06 86.38 0.44 3.45 16 10 C -0.04 -0.66 6.02 28.79 0.17 -0.48 16 11 C 0.25 5.43 15.44 89.44 1.38 6.81 16 12 N -0.49 -13.89 18.54 20.01 0.37 -13.52 16 13 C 0.54 22.35 5.22 87.66 0.46 22.81 16 14 O -0.56 -28.56 13.33 -3.10 -0.04 -28.60 16 15 C 0.16 6.73 4.14 85.63 0.35 7.08 16 16 N -0.60 -27.51 2.10 -706.33 -1.49 -29.00 16 17 C -0.25 -12.92 9.71 84.03 0.82 -12.11 16 18 H 0.07 3.53 7.80 -2.91 -0.02 3.51 16 19 C -0.04 -1.94 5.40 84.86 0.46 -1.48 16 20 N -0.92 -48.27 8.24 21.65 0.18 -48.09 16 21 Si 0.96 45.06 29.56 68.60 2.03 47.09 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.14 5.33 6.43 86.38 0.56 5.89 16 26 C -0.15 -5.63 9.30 71.98 0.67 -4.96 16 27 C -0.10 -2.90 9.36 22.38 0.21 -2.69 16 28 C -0.19 -5.03 9.03 22.35 0.20 -4.83 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 33 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 34 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.09 2.37 6.48 -2.39 -0.02 2.35 16 37 H 0.09 1.97 7.52 -2.38 -0.02 1.95 16 38 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.13 2.02 6.94 -2.38 -0.02 2.00 16 40 H 0.11 4.73 5.24 -2.39 -0.01 4.72 16 41 H 0.06 2.10 6.73 -2.39 -0.02 2.09 16 42 H 0.24 13.03 8.31 -92.70 -0.77 12.26 16 43 H 0.05 1.83 7.98 -2.39 -0.02 1.81 16 44 H 0.07 2.08 7.95 -2.38 -0.02 2.06 16 45 H 0.04 1.65 6.40 -2.39 -0.02 1.63 16 46 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.13 3.58 7.96 -2.91 -0.02 3.56 16 49 H 0.15 2.99 6.29 -2.91 -0.02 2.97 16 Total: -1.00 -70.45 403.35 7.06 -63.40 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.95 Total: 17.79 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 7.62 Total: 20.31 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -2.56 Total: -110.89 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.99 Total: -37.69 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.45 7.06 -63.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355657952.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.295 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds