Wall clock time and date at job start Wed Apr 1 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47620 * 2 1 4 4 C 1.34231 * 117.00441 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.53823 * 300.09569 * 6 4 3 8 8 O 1.42904 * 109.46782 * 59.90445 * 7 6 4 9 9 C 1.42899 * 113.99994 * 179.97438 * 8 7 6 10 10 C 1.53117 * 109.50575 * 60.20090 * 6 4 3 11 11 C 1.53115 * 109.16278 * 62.28301 * 10 6 4 12 12 C 1.53039 * 109.28042 * 57.65434 * 11 10 6 13 13 N 1.46841 * 109.52270 * 300.82481 * 12 11 10 14 14 C 1.46900 * 111.00053 * 185.83578 * 13 12 11 15 15 C 1.52997 * 109.46897 * 45.79017 * 14 13 12 16 16 C 1.53008 * 109.47059 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.46794 * 179.97438 * 16 15 14 18 18 C 1.76205 * 99.99509 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00431 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99884 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 180.27840 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71945 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72142 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72250 * 22 20 18 26 26 C 1.46848 * 111.20295 * 61.73936 * 13 12 11 27 27 H 1.08994 * 109.46521 * 300.00078 * 1 2 3 28 28 H 1.09001 * 109.46932 * 59.99840 * 1 2 3 29 29 H 1.08992 * 109.47147 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47065 * 240.00091 * 2 1 3 31 31 H 1.09001 * 109.46932 * 120.00160 * 2 1 3 32 32 H 1.09002 * 109.47079 * 179.89918 * 7 6 4 33 33 H 1.09000 * 109.47292 * 299.90590 * 7 6 4 34 34 H 1.08994 * 109.47392 * 300.00101 * 9 8 7 35 35 H 1.09003 * 109.46910 * 60.00145 * 9 8 7 36 36 H 1.08999 * 109.47231 * 179.97438 * 9 8 7 37 37 H 1.08995 * 109.52492 * 182.18945 * 10 6 4 38 38 H 1.09007 * 109.51985 * 302.37768 * 10 6 4 39 39 H 1.09002 * 109.50659 * 177.60137 * 11 10 6 40 40 H 1.09002 * 109.50137 * 297.67858 * 11 10 6 41 41 H 1.08997 * 109.46236 * 180.80565 * 12 11 10 42 42 H 1.08999 * 109.45712 * 60.83735 * 12 11 10 43 43 H 1.09006 * 109.47070 * 285.78886 * 14 13 12 44 44 H 1.09001 * 109.47279 * 165.78957 * 14 13 12 45 45 H 1.08992 * 109.47190 * 60.00071 * 15 14 13 46 46 H 1.09001 * 109.47108 * 300.00045 * 15 14 13 47 47 H 1.09000 * 109.47103 * 60.00151 * 16 15 14 48 48 H 1.09001 * 109.47000 * 299.99869 * 16 15 14 49 49 H 0.97005 * 119.99723 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.46000 * 58.26684 * 26 13 12 51 51 H 1.08998 * 109.46781 * 178.23824 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4489 3.6857 -1.2482 8 8 2.0217 3.7594 -1.2482 9 6 1.4750 4.4434 -2.3775 10 6 3.4529 3.6846 1.2518 11 6 3.9800 2.9625 2.4948 12 6 5.5066 2.8824 2.4232 13 7 5.9037 2.1581 1.2091 14 6 7.3562 1.9411 1.1768 15 6 7.8276 1.4413 2.5438 16 6 9.3407 1.2158 2.5104 17 16 9.8984 0.6252 4.1279 18 6 11.6235 0.4537 3.8126 19 1 12.0211 0.6954 2.8379 20 6 12.4716 0.0079 4.8169 21 7 11.9871 -0.2862 6.0050 22 14 14.3015 -0.1665 4.4851 23 1 14.5859 -1.5364 3.9872 24 1 14.7163 0.8277 3.4630 25 1 15.0573 0.0703 5.7413 26 6 5.4492 2.8579 0.0007 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8646 4.6933 -1.2466 33 1 3.7853 3.1552 -2.1390 34 1 1.8499 5.4666 -2.3990 35 1 1.7706 3.9289 -3.2919 36 1 0.3877 4.4559 -2.3033 37 1 3.8374 4.7043 1.2324 38 1 2.3633 3.7057 1.2774 39 1 3.6859 3.5136 3.3880 40 1 3.5638 1.9558 2.5347 41 1 5.8842 2.3561 3.2999 42 1 5.9223 3.8897 2.3975 43 1 7.8585 2.8791 0.9399 44 1 7.5958 1.1983 0.4159 45 1 7.3254 0.5034 2.7807 46 1 7.5880 2.1841 3.3047 47 1 9.8426 2.1540 2.2737 48 1 9.5806 0.4732 1.7495 49 1 12.5799 -0.5974 6.7071 50 1 5.8651 3.8654 -0.0135 51 1 5.7851 2.3140 -0.8821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374172239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:24 Heat of formation + Delta-G solvation = -139.741119 kcal Electronic energy + Delta-G solvation = -29189.498377 eV Core-core repulsion = 25215.054646 eV Total energy + Delta-G solvation = -3974.443731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12142 -38.97294 -37.99584 -36.41561 -35.06540 -32.42033 -32.27397 -31.81177 -31.50900 -27.59399 -26.27173 -25.75052 -25.34850 -24.63770 -23.02117 -22.74761 -21.94181 -20.11033 -19.56785 -17.44516 -17.26079 -16.93447 -16.82436 -16.24911 -16.11702 -15.69306 -15.22569 -14.92693 -14.77639 -14.56917 -14.23435 -14.08124 -13.81509 -13.77879 -13.53847 -13.02069 -12.99268 -12.81313 -12.56413 -12.37256 -12.28874 -11.99653 -11.92615 -11.79205 -11.62813 -11.56783 -11.27408 -11.12327 -11.04159 -10.81186 -10.71470 -10.54379 -10.53080 -10.49380 -10.21801 -10.11428 -9.95539 -9.48403 -9.02558 -8.25730 -8.18619 -6.48532 -6.19483 -3.89178 2.33190 2.61875 3.19539 3.24051 3.25927 3.31327 3.60974 4.00117 4.25749 4.28447 4.32806 4.51735 4.76506 4.77675 4.84799 4.86428 4.91399 4.98021 5.03901 5.05958 5.10835 5.13303 5.16330 5.26602 5.31358 5.32616 5.40452 5.41110 5.48767 5.53546 5.55046 5.59785 5.63673 5.76640 5.77725 5.80684 5.82403 5.95486 6.05176 6.13811 6.22624 6.38464 6.52034 6.65565 6.72671 6.79407 7.13413 7.14744 7.63807 7.93040 8.40046 9.26705 10.88698 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.002021 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.003420 B =13848.388159 C =14338.645694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.343 6.343 4 C 0.475 3.525 5 O -0.478 6.478 6 C -0.042 4.042 7 C 0.072 3.928 8 O -0.370 6.370 9 C 0.032 3.968 10 C -0.105 4.105 11 C -0.122 4.122 12 C 0.042 3.958 13 N -0.523 5.523 14 C 0.066 3.934 15 C -0.100 4.100 16 C -0.111 4.111 17 S -0.133 6.133 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.272 1.272 25 H -0.282 1.282 26 C 0.078 3.922 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.267 0.733 50 H 0.047 0.953 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.988 9.978 -16.087 31.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.260 6.260 4 C 0.315 3.685 5 O -0.362 6.362 6 C -0.044 4.044 7 C -0.006 4.006 8 O -0.289 6.289 9 C -0.065 4.065 10 C -0.142 4.142 11 C -0.160 4.160 12 C -0.085 4.085 13 N -0.248 5.248 14 C -0.063 4.063 15 C -0.138 4.138 16 C -0.261 4.261 17 S 0.095 5.905 18 C -0.663 4.663 19 H 0.090 0.910 20 C -0.139 4.139 21 N -0.506 5.506 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.197 1.197 25 H -0.208 1.208 26 C -0.051 4.051 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.655 8.840 -14.783 30.901 hybrid contribution 2.482 0.831 -1.634 3.085 sum -23.173 9.672 -16.417 30.001 Atomic orbital electron populations 1.21754 0.92933 1.02538 1.03336 1.22939 0.95126 0.81038 1.02260 1.86593 1.24310 1.31048 1.84058 1.22971 0.80648 0.91676 0.73177 1.90723 1.60198 1.42142 1.43150 1.20674 0.95862 0.90423 0.97407 1.22428 0.82639 0.99489 0.96049 1.88016 1.18827 1.77652 1.44374 1.22743 0.99636 0.95553 0.88583 1.21620 1.02345 0.98435 0.91831 1.21677 0.95583 1.01154 0.97546 1.22328 0.95172 0.96698 0.94347 1.61871 1.14349 1.47769 1.00765 1.22144 0.85278 0.99643 0.99236 1.21430 0.94630 1.02264 0.95503 1.23225 0.96959 1.02566 1.03313 1.84617 1.08835 1.85962 1.11094 1.22692 0.91472 1.51374 1.00758 0.90999 1.25022 0.99521 0.94800 0.94543 1.70031 1.35685 1.42376 1.02462 0.86165 0.82877 0.78639 0.77837 1.20283 1.19727 1.20788 1.21841 0.90446 0.97532 0.95295 0.91597 0.91687 0.90625 0.91785 0.91464 0.91757 0.92716 0.94127 0.94238 0.89467 0.90849 0.89629 0.90686 0.91427 0.89041 0.94744 0.95079 0.90536 0.90657 0.91425 0.92382 0.92072 0.92355 0.93454 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.34 -4.01 8.88 -45.24 -0.40 -4.41 16 4 C 0.47 6.05 5.26 36.00 0.19 6.24 16 5 O -0.48 -7.57 14.99 -18.75 -0.28 -7.85 16 6 C -0.04 -0.43 0.57 -155.58 -0.09 -0.52 16 7 C 0.07 0.58 4.80 37.16 0.18 0.76 16 8 O -0.37 -3.26 8.77 -52.40 -0.46 -3.72 16 9 C 0.03 0.18 11.01 101.05 1.11 1.29 16 10 C -0.10 -0.98 4.56 -26.61 -0.12 -1.10 16 11 C -0.12 -1.29 5.84 -26.65 -0.16 -1.45 16 12 C 0.04 0.52 4.85 -3.84 -0.02 0.50 16 13 N -0.52 -7.02 3.67 -234.67 -0.86 -7.88 16 14 C 0.07 0.95 5.27 -3.83 -0.02 0.93 16 15 C -0.10 -1.71 4.47 -26.73 -0.12 -1.83 16 16 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 17 S -0.13 -3.57 21.44 -107.50 -2.30 -5.88 16 18 C -0.51 -15.04 9.50 30.94 0.29 -14.75 16 19 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 20 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.08 0.85 3.70 -3.83 -0.01 0.84 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.82 7.70 -51.93 -0.40 0.42 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.84 7.35 -51.93 -0.38 0.45 16 41 H 0.09 1.23 5.81 -51.93 -0.30 0.93 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.14 6.21 -51.93 -0.32 0.82 16 47 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 48 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 49 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 415.18 15.07 6.26 6.26 Total: -1.00 -34.11 415.18 -9.77 -43.88 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -9.40 Total: -2.50 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 1.96 Total: -9.10 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.13 Total: -33.53 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.14 Total: -15.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.11 -9.77 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374172239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.861 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds