Wall clock time and date at job start Wed Apr 1 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47620 * 2 1 4 4 C 1.34231 * 117.00441 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.53823 * 300.09569 * 6 4 3 8 8 O 1.42904 * 109.46782 * 59.90445 * 7 6 4 9 9 C 1.42899 * 113.99994 * 179.97438 * 8 7 6 10 10 C 1.53117 * 109.50575 * 60.20090 * 6 4 3 11 11 C 1.53115 * 109.16278 * 62.28301 * 10 6 4 12 12 C 1.53039 * 109.28042 * 57.65434 * 11 10 6 13 13 N 1.46841 * 109.52270 * 300.82481 * 12 11 10 14 14 C 1.46900 * 111.00053 * 185.83578 * 13 12 11 15 15 C 1.52997 * 109.46897 * 45.79017 * 14 13 12 16 16 C 1.53008 * 109.47059 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.46794 * 179.97438 * 16 15 14 18 18 C 1.76205 * 99.99509 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00431 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99884 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99752 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99976 * 180.27840 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71945 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72142 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72250 * 22 20 18 26 26 C 1.46848 * 111.20295 * 61.73936 * 13 12 11 27 27 H 1.08994 * 109.46521 * 300.00078 * 1 2 3 28 28 H 1.09001 * 109.46932 * 59.99840 * 1 2 3 29 29 H 1.08992 * 109.47147 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47065 * 240.00091 * 2 1 3 31 31 H 1.09001 * 109.46932 * 120.00160 * 2 1 3 32 32 H 1.09002 * 109.47079 * 179.89918 * 7 6 4 33 33 H 1.09000 * 109.47292 * 299.90590 * 7 6 4 34 34 H 1.08994 * 109.47392 * 300.00101 * 9 8 7 35 35 H 1.09003 * 109.46910 * 60.00145 * 9 8 7 36 36 H 1.08999 * 109.47231 * 179.97438 * 9 8 7 37 37 H 1.08995 * 109.52492 * 182.18945 * 10 6 4 38 38 H 1.09007 * 109.51985 * 302.37768 * 10 6 4 39 39 H 1.09002 * 109.50659 * 177.60137 * 11 10 6 40 40 H 1.09002 * 109.50137 * 297.67858 * 11 10 6 41 41 H 1.08997 * 109.46236 * 180.80565 * 12 11 10 42 42 H 1.08999 * 109.45712 * 60.83735 * 12 11 10 43 43 H 1.09006 * 109.47070 * 285.78886 * 14 13 12 44 44 H 1.09001 * 109.47279 * 165.78957 * 14 13 12 45 45 H 1.08992 * 109.47190 * 60.00071 * 15 14 13 46 46 H 1.09001 * 109.47108 * 300.00045 * 15 14 13 47 47 H 1.09000 * 109.47103 * 60.00151 * 16 15 14 48 48 H 1.09001 * 109.47000 * 299.99869 * 16 15 14 49 49 H 0.97005 * 119.99723 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.46000 * 58.26684 * 26 13 12 51 51 H 1.08998 * 109.46781 * 178.23824 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4489 3.6857 -1.2482 8 8 2.0217 3.7594 -1.2482 9 6 1.4750 4.4434 -2.3775 10 6 3.4529 3.6846 1.2518 11 6 3.9800 2.9625 2.4948 12 6 5.5066 2.8824 2.4232 13 7 5.9037 2.1581 1.2091 14 6 7.3562 1.9411 1.1768 15 6 7.8276 1.4413 2.5438 16 6 9.3407 1.2158 2.5104 17 16 9.8984 0.6252 4.1279 18 6 11.6235 0.4537 3.8126 19 1 12.0211 0.6954 2.8379 20 6 12.4716 0.0079 4.8169 21 7 11.9871 -0.2862 6.0050 22 14 14.3015 -0.1665 4.4851 23 1 14.5859 -1.5364 3.9872 24 1 14.7163 0.8277 3.4630 25 1 15.0573 0.0703 5.7413 26 6 5.4492 2.8579 0.0007 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8646 4.6933 -1.2466 33 1 3.7853 3.1552 -2.1390 34 1 1.8499 5.4666 -2.3990 35 1 1.7706 3.9289 -3.2919 36 1 0.3877 4.4559 -2.3033 37 1 3.8374 4.7043 1.2324 38 1 2.3633 3.7057 1.2774 39 1 3.6859 3.5136 3.3880 40 1 3.5638 1.9558 2.5347 41 1 5.8842 2.3561 3.2999 42 1 5.9223 3.8897 2.3975 43 1 7.8585 2.8791 0.9399 44 1 7.5958 1.1983 0.4159 45 1 7.3254 0.5034 2.7807 46 1 7.5880 2.1841 3.3047 47 1 9.8426 2.1540 2.2737 48 1 9.5806 0.4732 1.7495 49 1 12.5799 -0.5974 6.7071 50 1 5.8651 3.8654 -0.0135 51 1 5.7851 2.3140 -0.8821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374172239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:23 Heat of formation + Delta-G solvation = -159.659630 kcal Electronic energy + Delta-G solvation = -29190.362108 eV Core-core repulsion = 25215.054646 eV Total energy + Delta-G solvation = -3975.307462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02678 -39.90341 -38.66347 -37.41298 -36.11951 -34.61261 -33.33529 -32.76773 -32.32389 -28.27285 -27.86510 -27.17726 -26.34636 -25.42484 -24.10061 -23.58086 -22.94542 -21.29990 -20.45593 -19.55650 -18.18516 -17.78575 -17.55667 -17.12557 -16.91442 -16.90322 -16.50398 -16.31476 -16.07642 -15.78709 -15.31884 -15.06918 -14.95160 -14.69618 -14.64138 -14.29865 -13.82239 -13.66020 -13.54064 -13.32664 -13.23635 -13.19076 -13.02115 -12.95479 -12.90665 -12.73820 -12.43676 -12.42007 -12.36075 -12.17476 -12.00646 -11.81733 -11.52357 -11.39393 -11.35614 -11.18749 -11.14092 -11.09062 -10.54145 -10.32377 -9.16498 -8.67650 -8.37875 -6.14397 1.30506 1.37992 1.38907 1.48091 1.73093 1.79185 2.27442 2.54906 2.96089 3.09675 3.31869 3.51054 3.56711 3.76048 3.95581 4.02359 4.02990 4.05363 4.13806 4.16357 4.25264 4.34032 4.35495 4.37619 4.41321 4.46608 4.53234 4.60548 4.61777 4.64505 4.69666 4.73057 4.76776 4.79368 4.91830 4.93173 4.95317 4.96167 5.03904 5.17023 5.18783 5.22813 5.25526 5.32486 5.38940 5.63284 6.08813 6.15048 6.17575 6.25988 6.97952 7.03965 8.71598 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.002021 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.003420 B =13848.388159 C =14338.645694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 O -0.344 6.344 4 C 0.473 3.527 5 O -0.518 6.518 6 C -0.041 4.041 7 C 0.075 3.925 8 O -0.392 6.392 9 C 0.027 3.973 10 C -0.097 4.097 11 C -0.118 4.118 12 C 0.042 3.958 13 N -0.542 5.542 14 C 0.077 3.923 15 C -0.086 4.086 16 C -0.086 4.086 17 S -0.199 6.199 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.908 5.908 22 Si 0.996 3.004 23 H -0.268 1.268 24 H -0.262 1.262 25 H -0.273 1.273 26 C 0.077 3.923 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.271 0.729 50 H 0.073 0.927 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.280 11.958 -17.687 33.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.261 6.261 4 C 0.315 3.685 5 O -0.406 6.406 6 C -0.043 4.043 7 C -0.003 4.003 8 O -0.310 6.310 9 C -0.069 4.069 10 C -0.135 4.135 11 C -0.156 4.156 12 C -0.085 4.085 13 N -0.267 5.267 14 C -0.052 4.052 15 C -0.125 4.125 16 C -0.235 4.235 17 S 0.029 5.971 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.186 1.186 25 H -0.198 1.198 26 C -0.051 4.051 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.983 10.836 -16.395 32.578 hybrid contribution 2.439 0.199 -1.169 2.712 sum -23.544 11.034 -17.563 31.378 Atomic orbital electron populations 1.21745 0.90419 1.03889 1.03619 1.23129 0.97096 0.80315 1.01494 1.86604 1.23931 1.31951 1.83616 1.23597 0.80639 0.92440 0.71785 1.90703 1.61007 1.43666 1.45221 1.20757 0.95219 0.89178 0.99139 1.22427 0.82733 1.00437 0.94676 1.87979 1.19030 1.78347 1.45684 1.22898 1.00097 0.96103 0.87804 1.21597 1.02298 0.99143 0.90416 1.21646 0.94369 1.00269 0.99279 1.22318 0.96217 0.96893 0.93111 1.61802 1.13310 1.49374 1.02205 1.21921 0.86515 1.00031 0.96704 1.21291 0.91777 1.01666 0.97720 1.23138 0.99139 1.02281 0.98949 1.84652 1.09054 1.86835 1.16513 1.23035 0.92405 1.51945 1.01108 0.90907 1.26108 1.04999 0.93972 0.94105 1.70166 1.37723 1.42986 1.03522 0.84988 0.76029 0.79034 0.78175 1.19366 1.18620 1.19814 1.21898 0.91046 0.98385 0.93784 0.91479 0.91127 0.88759 0.92173 0.92700 0.89165 0.92642 0.92670 0.93889 0.88702 0.88488 0.89655 0.88950 0.93955 0.91065 0.93264 0.93480 0.91189 0.92511 0.91002 0.91589 0.92251 0.91969 0.90948 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.29 71.98 0.74 -1.06 16 2 C 0.05 1.07 6.19 71.98 0.45 1.52 16 3 O -0.34 -8.01 8.88 -45.70 -0.41 -8.42 16 4 C 0.47 12.03 5.26 71.23 0.37 12.40 16 5 O -0.52 -16.93 14.99 21.96 0.33 -16.60 16 6 C -0.04 -0.78 0.57 -52.88 -0.03 -0.81 16 7 C 0.07 1.03 4.80 71.98 0.35 1.38 16 8 O -0.39 -6.05 8.77 -132.57 -1.16 -7.21 16 9 C 0.03 0.25 11.01 113.37 1.25 1.49 16 10 C -0.10 -1.60 4.56 30.67 0.14 -1.46 16 11 C -0.12 -2.38 5.84 30.65 0.18 -2.20 16 12 C 0.04 0.99 4.85 86.33 0.42 1.41 16 13 N -0.54 -14.14 3.67 -896.35 -3.29 -17.43 16 14 C 0.08 2.17 5.27 86.30 0.46 2.63 16 15 C -0.09 -2.97 4.47 30.60 0.14 -2.83 16 16 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 17 S -0.20 -10.96 21.44 -56.49 -1.21 -12.17 16 18 C -0.54 -31.77 9.50 67.96 0.65 -31.13 16 19 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 22 Si 1.00 44.72 29.55 68.60 2.03 46.75 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 C 0.08 1.56 3.70 86.33 0.32 1.87 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.46 7.70 -2.38 -0.02 1.44 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.06 7.35 -2.39 -0.02 1.05 16 41 H 0.07 1.93 5.81 -2.39 -0.01 1.92 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 1.18 8.08 -2.38 -0.02 1.16 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.43 6.21 -2.39 -0.01 2.41 16 47 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 48 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 50 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.08 1.65 8.06 -2.39 -0.02 1.63 16 Total: -1.00 -75.42 415.18 3.74 -71.68 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.87 Total: 17.73 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 6.29 Total: -18.76 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -3.00 Total: -72.99 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.24 Total: -32.24 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.21 Total: -12.17 kcal Total: -75.42 3.74 -71.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374172239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.979 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds