Wall clock time and date at job start Wed Apr 1 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.46949 * 2 1 4 4 C 1.34230 * 117.00130 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00035 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00355 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.50319 * 60.07608 * 6 4 3 8 8 O 1.42908 * 109.46941 * 299.92345 * 7 6 4 9 9 C 1.42894 * 113.99848 * 180.02562 * 8 7 6 10 10 C 1.53114 * 109.49915 * 299.99781 * 6 4 3 11 11 C 1.53126 * 109.16071 * 297.67500 * 10 6 4 12 12 C 1.53034 * 109.27454 * 302.34640 * 11 10 6 13 13 N 1.46847 * 109.52486 * 59.18079 * 12 11 10 14 14 C 1.46906 * 110.99812 * 174.15668 * 13 12 11 15 15 C 1.52993 * 109.47124 * 314.21081 * 14 13 12 16 16 C 1.53009 * 109.47020 * 179.97438 * 15 14 13 17 17 S 1.80993 * 109.47272 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00217 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99953 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00430 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00227 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47139 * 89.99693 * 22 20 18 24 24 H 1.48498 * 109.47233 * 209.99378 * 22 20 18 25 25 H 1.48502 * 109.47154 * 329.99827 * 22 20 18 26 26 C 1.46848 * 111.19788 * 298.25416 * 13 12 11 27 27 H 1.09007 * 109.46930 * 59.99906 * 1 2 3 28 28 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47377 * 299.99982 * 1 2 3 30 30 H 1.08992 * 109.47397 * 240.00578 * 2 1 3 31 31 H 1.08999 * 109.47109 * 119.99809 * 2 1 3 32 32 H 1.08999 * 109.46904 * 59.92207 * 7 6 4 33 33 H 1.08996 * 109.46983 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47191 * 300.00178 * 9 8 7 35 35 H 1.09004 * 109.47372 * 59.99818 * 9 8 7 36 36 H 1.08995 * 109.47241 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.52084 * 177.76938 * 10 6 4 38 38 H 1.09000 * 109.57760 * 57.60708 * 10 6 4 39 39 H 1.08997 * 109.50129 * 62.28942 * 11 10 6 40 40 H 1.09006 * 109.50177 * 182.40700 * 11 10 6 41 41 H 1.08999 * 109.45899 * 179.20018 * 12 11 10 42 42 H 1.09006 * 109.46754 * 299.15875 * 12 11 10 43 43 H 1.08999 * 109.46543 * 74.21464 * 14 13 12 44 44 H 1.09000 * 109.46689 * 194.20961 * 14 13 12 45 45 H 1.08995 * 109.47253 * 299.99744 * 15 14 13 46 46 H 1.09000 * 109.47436 * 60.00337 * 15 14 13 47 47 H 1.08995 * 109.46925 * 299.99978 * 16 15 14 48 48 H 1.09000 * 109.46714 * 59.99928 * 16 15 14 49 49 H 0.97001 * 120.00262 * 180.02562 * 21 20 18 50 50 H 1.09000 * 109.46321 * 301.72950 * 26 13 12 51 51 H 1.08999 * 109.45108 * 181.74821 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.4517 3.6838 1.2507 8 8 2.0247 3.7606 1.2525 9 6 1.4808 4.4428 2.3841 10 6 3.4486 3.6864 -1.2493 11 6 3.9728 2.9663 -2.4949 12 6 5.4996 2.8872 -2.4277 13 7 5.9005 2.1613 -1.2158 14 6 7.3533 1.9452 -1.1880 15 6 7.8212 1.4477 -2.5571 16 6 9.3344 1.2232 -2.5283 17 16 9.8878 0.6339 -4.1477 18 6 11.6139 0.4632 -3.8378 19 1 12.0141 0.7046 -2.8641 20 6 12.4594 0.0197 -4.8451 21 7 11.9717 -0.2740 -6.0320 22 14 14.2895 -0.1606 -4.5167 23 1 14.5703 -1.5310 -4.0184 24 1 15.0435 0.0730 -5.7745 25 1 14.7094 0.8330 -3.4960 26 6 5.4490 2.8591 -0.0051 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7880 3.1502 2.1396 33 1 3.8690 4.6907 1.2507 34 1 1.7763 3.9254 3.2968 35 1 1.8580 5.4653 2.4077 36 1 0.3935 4.4587 2.3107 37 1 3.8327 4.7063 -1.2295 38 1 2.3591 3.7078 -1.2724 39 1 3.5575 1.9593 -2.5348 40 1 3.6758 3.5187 -3.3865 41 1 5.8750 2.3625 -3.3063 42 1 5.9148 3.8947 -2.4018 43 1 7.8556 2.8831 -0.9511 44 1 7.5955 1.2014 -0.4289 45 1 7.3188 0.5098 -2.7940 46 1 7.5790 2.1915 -3.3162 47 1 9.8364 2.1612 -2.2916 48 1 9.5770 0.4796 -1.7691 49 1 12.5625 -0.5844 -6.7359 50 1 5.8644 3.8668 0.0095 51 1 5.7877 2.3138 0.8758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374172241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:30 Heat of formation + Delta-G solvation = -139.802658 kcal Electronic energy + Delta-G solvation = -29188.673435 eV Core-core repulsion = 25214.227035 eV Total energy + Delta-G solvation = -3974.446399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12135 -38.97381 -37.99638 -36.41717 -35.06555 -32.42116 -32.27406 -31.81213 -31.50907 -27.59407 -26.27199 -25.75147 -25.34933 -24.63681 -23.02091 -22.74765 -21.94265 -20.11087 -19.56820 -17.44558 -17.26129 -16.93497 -16.82491 -16.25091 -16.11775 -15.69355 -15.22599 -14.92701 -14.77655 -14.56964 -14.23337 -14.08211 -13.81542 -13.77906 -13.53881 -13.02068 -12.99250 -12.81300 -12.56522 -12.37368 -12.28872 -11.99664 -11.92663 -11.79234 -11.62874 -11.56848 -11.27412 -11.12319 -11.04143 -10.81168 -10.71486 -10.54400 -10.53119 -10.49467 -10.21851 -10.11443 -9.95580 -9.48467 -9.02599 -8.25705 -8.18738 -6.48550 -6.19461 -3.89177 2.33143 2.61753 3.19498 3.24068 3.25906 3.31316 3.60952 4.00075 4.25756 4.28537 4.32817 4.51686 4.76470 4.77636 4.84770 4.86392 4.91366 4.98014 5.03867 5.05971 5.10824 5.13282 5.16350 5.26598 5.31342 5.32601 5.40446 5.41145 5.48766 5.53540 5.55053 5.59751 5.63647 5.76642 5.77677 5.80716 5.82391 5.95515 6.05188 6.13835 6.22599 6.38454 6.51939 6.65541 6.72607 6.79386 7.13355 7.14659 7.63805 7.92939 8.40040 9.26724 10.88732 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002021 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.825526 B =13848.092096 C =14338.718665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.343 6.343 4 C 0.475 3.525 5 O -0.478 6.478 6 C -0.042 4.042 7 C 0.072 3.928 8 O -0.371 6.371 9 C 0.032 3.968 10 C -0.105 4.105 11 C -0.122 4.122 12 C 0.042 3.958 13 N -0.524 5.524 14 C 0.066 3.934 15 C -0.100 4.100 16 C -0.111 4.111 17 S -0.133 6.133 18 C -0.515 4.515 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.078 3.922 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.267 0.733 50 H 0.048 0.952 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.950 9.947 16.162 31.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.260 6.260 4 C 0.315 3.685 5 O -0.362 6.362 6 C -0.044 4.044 7 C -0.006 4.006 8 O -0.289 6.289 9 C -0.065 4.065 10 C -0.142 4.142 11 C -0.160 4.160 12 C -0.086 4.086 13 N -0.248 5.248 14 C -0.063 4.063 15 C -0.138 4.138 16 C -0.261 4.261 17 S 0.095 5.905 18 C -0.663 4.663 19 H 0.090 0.910 20 C -0.139 4.139 21 N -0.506 5.506 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.051 4.051 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.620 8.806 14.861 30.899 hybrid contribution 2.486 0.832 1.628 3.086 sum -23.133 9.638 16.489 29.999 Atomic orbital electron populations 1.21756 0.92931 1.02540 1.03337 1.22938 0.95127 0.81034 1.02262 1.86593 1.24309 1.31050 1.84059 1.22975 0.80648 0.91676 0.73168 1.90722 1.60192 1.42157 1.43159 1.20673 0.95872 0.90421 0.97391 1.22430 0.82648 0.99495 0.96034 1.88015 1.18880 1.77777 1.44208 1.22742 0.99668 0.95570 0.88532 1.21620 1.02342 0.98427 0.91844 1.21679 0.95585 1.01162 0.97532 1.22331 0.95158 0.96681 0.94385 1.61877 1.14328 1.47795 1.00763 1.22144 0.85280 0.99652 0.99225 1.21429 0.94643 1.02273 0.95481 1.23224 0.96961 1.02564 1.03318 1.84613 1.08842 1.86000 1.11040 1.22689 0.91441 1.51448 1.00726 0.91002 1.25019 0.99518 0.94800 0.94539 1.70026 1.35696 1.42397 1.02437 0.86167 0.82880 0.78651 0.77830 1.20277 1.20790 1.19729 1.21838 0.90456 0.97551 0.95267 0.91595 0.90624 0.91686 0.91461 0.91784 0.92709 0.91755 0.94232 0.94135 0.89466 0.90859 0.89626 0.91425 0.90683 0.89043 0.94743 0.95077 0.90534 0.90657 0.91424 0.92380 0.92075 0.92352 0.93447 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.34 -4.01 8.89 -45.21 -0.40 -4.41 16 4 C 0.47 6.05 5.26 36.01 0.19 6.24 16 5 O -0.48 -7.57 14.99 -18.75 -0.28 -7.85 16 6 C -0.04 -0.43 0.57 -155.58 -0.09 -0.52 16 7 C 0.07 0.58 4.80 37.16 0.18 0.76 16 8 O -0.37 -3.26 8.78 -52.28 -0.46 -3.72 16 9 C 0.03 0.18 11.01 101.05 1.11 1.29 16 10 C -0.10 -0.98 4.56 -26.61 -0.12 -1.10 16 11 C -0.12 -1.29 5.84 -26.65 -0.16 -1.45 16 12 C 0.04 0.51 4.85 -3.84 -0.02 0.50 16 13 N -0.52 -7.02 3.68 -234.67 -0.86 -7.88 16 14 C 0.07 0.95 5.27 -3.82 -0.02 0.93 16 15 C -0.10 -1.71 4.47 -26.73 -0.12 -1.83 16 16 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 17 S -0.13 -3.57 21.44 -107.50 -2.30 -5.87 16 18 C -0.51 -15.05 9.50 30.94 0.29 -14.75 16 19 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.08 0.85 3.70 -3.83 -0.01 0.84 16 27 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 39 H 0.07 0.84 7.35 -51.93 -0.38 0.45 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.23 5.81 -51.93 -0.30 0.93 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.14 6.21 -51.93 -0.32 0.81 16 47 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 48 H 0.06 1.28 8.14 -51.91 -0.42 0.85 16 49 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 415.19 15.07 6.26 6.26 Total: -1.00 -34.10 415.19 -9.78 -43.88 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -9.40 Total: -2.50 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 1.96 Total: -9.10 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.13 Total: -33.53 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.14 Total: -15.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.30 Total: -5.87 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.10 -9.78 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374172241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.924 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds