Wall clock time and date at job start Wed Apr 1 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99528 * 2 1 4 4 N 1.46893 * 109.47145 * 124.17769 * 3 2 1 5 5 C 1.46903 * 111.00258 * 291.83628 * 4 3 2 6 6 C 1.50697 * 109.47130 * 297.97378 * 5 4 3 7 7 H 1.07991 * 120.00182 * 354.91295 * 6 5 4 8 8 C 1.37879 * 119.99803 * 174.90771 * 6 5 4 9 9 N 1.31512 * 120.00214 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99780 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.46975 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46979 * 120.00298 * 10 8 6 13 13 H 1.48498 * 109.46669 * 240.00207 * 10 8 6 14 14 C 1.46898 * 110.99920 * 55.79149 * 4 3 2 15 15 C 1.50703 * 109.47334 * 66.04791 * 14 4 3 16 16 O 1.21290 * 119.99429 * 359.97438 * 15 14 4 17 17 N 1.34772 * 119.99951 * 180.02562 * 15 14 4 18 18 C 1.39961 * 119.99643 * 185.13008 * 17 15 14 19 19 C 1.38994 * 119.99693 * 214.13720 * 18 17 15 20 20 C 1.38210 * 120.22133 * 179.76212 * 19 18 17 21 21 C 1.38020 * 120.22400 * 0.51338 * 20 19 18 22 22 C 1.39588 * 119.99498 * 359.74436 * 21 20 19 23 23 C 1.47857 * 120.10936 * 180.02562 * 22 21 20 24 24 O 1.21548 * 119.99743 * 179.97438 * 23 22 21 25 25 N 1.34774 * 120.00153 * 359.97227 * 23 22 21 26 26 C 1.46501 * 119.99693 * 180.02562 * 25 23 22 27 27 C 1.53005 * 109.46937 * 180.02562 * 26 25 23 28 28 C 1.38593 * 120.00313 * 34.41050 * 18 17 15 29 29 H 1.07994 * 120.00288 * 359.97438 * 1 2 3 30 30 H 1.08008 * 119.98979 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00288 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46982 * 4.17924 * 3 2 1 33 33 H 1.08994 * 109.46993 * 244.18209 * 3 2 1 34 34 H 1.09003 * 109.46818 * 57.97499 * 5 4 3 35 35 H 1.09000 * 109.47353 * 177.96857 * 5 4 3 36 36 H 0.96997 * 120.00092 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47344 * 186.04763 * 14 4 3 38 38 H 1.09001 * 109.47638 * 306.04447 * 14 4 3 39 39 H 0.97000 * 120.00216 * 5.12297 * 17 15 14 40 40 H 1.08000 * 119.88782 * 0.02562 * 19 18 17 41 41 H 1.07999 * 119.89068 * 180.25490 * 20 19 18 42 42 H 1.08002 * 120.00614 * 179.76389 * 21 20 19 43 43 H 0.96996 * 120.00271 * 0.02562 * 25 23 22 44 44 H 1.09002 * 109.47054 * 300.00012 * 26 25 23 45 45 H 1.08994 * 109.47157 * 60.00371 * 26 25 23 46 46 H 1.08997 * 109.46846 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.46775 * 300.00374 * 27 26 25 48 48 H 1.09004 * 109.47262 * 60.00185 * 27 26 25 49 49 H 1.08003 * 120.10998 * 359.96370 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9820 1.3403 1.1457 5 6 2.2415 1.4151 2.4122 6 6 1.4385 2.6898 2.4501 7 1 1.5374 3.4141 1.6552 8 6 0.5775 2.9313 3.4995 9 7 0.4573 2.0494 4.4677 10 14 -0.4173 4.5117 3.5468 11 1 -0.1022 5.3309 2.3490 12 1 -1.8659 4.1847 3.5552 13 1 -0.0751 5.2754 4.7734 14 6 3.8855 0.1821 1.1318 15 6 4.7993 0.2720 -0.0632 16 8 4.7066 1.2087 -0.8282 17 7 5.7187 -0.6887 -0.2822 18 6 6.6378 -0.5521 -1.3289 19 6 7.0730 -1.6752 -2.0225 20 6 7.9768 -1.5451 -3.0601 21 6 8.4613 -0.3003 -3.4074 22 6 8.0345 0.8332 -2.7135 23 6 8.5515 2.1680 -3.0839 24 8 8.1781 3.1537 -2.4786 25 7 9.4367 2.2918 -4.0926 26 6 9.9492 3.6143 -4.4592 27 6 10.9298 3.4760 -5.6255 28 6 7.1183 0.7023 -1.6699 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9355 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3574 2.1323 0.0749 33 1 2.6327 1.3961 -0.9250 34 1 1.5699 0.5602 2.4915 35 1 2.9442 1.4035 3.2453 36 1 -0.1482 2.2195 5.2062 37 1 4.4809 0.1747 2.0448 38 1 3.2996 -0.7352 1.0729 39 1 5.7435 -1.4749 0.2855 40 1 6.7005 -2.6523 -1.7526 41 1 8.3083 -2.4209 -3.5981 42 1 9.1703 -0.2031 -4.2163 43 1 9.7344 1.5053 -4.5759 44 1 9.1197 4.2559 -4.7565 45 1 10.4612 4.0554 -3.6040 46 1 11.3115 4.4599 -5.8979 47 1 11.7593 2.8342 -5.3285 48 1 10.4175 3.0351 -6.4806 49 1 6.7842 1.5758 -1.1296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428839943.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:20 Heat of formation + Delta-G solvation = -35.120568 kcal Electronic energy + Delta-G solvation = -29552.250904 eV Core-core repulsion = 25479.192660 eV Total energy + Delta-G solvation = -4073.058244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.79307 -40.93068 -39.44314 -38.26605 -36.44371 -35.80404 -34.85010 -33.74738 -32.57834 -31.58182 -30.78697 -29.58019 -28.06737 -26.11335 -25.48996 -23.94573 -23.41154 -22.69310 -21.76019 -21.50602 -20.46804 -19.33750 -18.46763 -18.05414 -17.39088 -17.29214 -17.11526 -16.83881 -16.60204 -16.52356 -16.01279 -15.94348 -15.55779 -15.18777 -15.02397 -15.00346 -14.79317 -14.52220 -14.22985 -13.94561 -13.71000 -13.34847 -13.25222 -12.91923 -12.85069 -12.78532 -12.66793 -12.63495 -12.59235 -12.40956 -12.29580 -12.14526 -12.02945 -11.51803 -11.41150 -11.11283 -10.81521 -10.60134 -10.29137 -10.16987 -9.90248 -9.20736 -8.94653 -8.20365 -6.27392 -0.19962 0.29267 1.37152 1.38832 1.39640 1.52100 1.53548 1.84284 1.90752 2.13379 2.40473 2.87160 3.12816 3.40266 3.62331 3.76231 3.94854 4.02842 4.06941 4.14163 4.15696 4.19238 4.22199 4.36593 4.45123 4.45984 4.49892 4.54029 4.64915 4.88226 4.92340 4.97415 5.03927 5.10915 5.20026 5.23450 5.27844 5.28661 5.32799 5.35683 5.38917 5.46662 5.63613 5.67699 5.89053 5.94662 6.03662 6.31809 6.36087 6.47279 6.64046 6.87068 7.14510 7.17998 7.40771 8.90389 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.002333 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.590109 B =11998.134960 C =13344.440369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.194 4.194 3 C 0.089 3.911 4 N -0.533 5.533 5 C 0.212 3.788 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.958 3.042 11 H -0.273 1.273 12 H -0.274 1.274 13 H -0.277 1.277 14 C 0.035 3.965 15 C 0.516 3.484 16 O -0.538 6.538 17 N -0.663 5.663 18 C 0.130 3.870 19 C -0.109 4.109 20 C -0.095 4.095 21 C -0.092 4.092 22 C -0.138 4.138 23 C 0.548 3.452 24 O -0.590 6.590 25 N -0.708 5.708 26 C 0.107 3.893 27 C -0.153 4.153 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.076 0.924 34 H -0.012 1.012 35 H 0.006 0.994 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.430 0.570 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.165 0.835 43 H 0.418 0.582 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.187 -14.283 -20.479 32.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.213 4.213 3 C -0.038 4.038 4 N -0.256 5.256 5 C 0.086 3.914 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.200 1.200 13 H -0.203 1.203 14 C -0.097 4.097 15 C 0.305 3.695 16 O -0.413 6.413 17 N -0.312 5.312 18 C 0.035 3.965 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.111 4.111 22 C -0.142 4.142 23 C 0.336 3.664 24 O -0.471 6.471 25 N -0.361 5.361 26 C -0.017 4.017 27 C -0.210 4.210 28 C -0.119 4.119 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.005 0.995 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.270 0.730 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.182 0.818 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.056 -12.451 -20.427 31.869 hybrid contribution -1.300 0.086 0.977 1.629 sum 19.756 -12.365 -19.450 30.356 Atomic orbital electron populations 1.23898 0.95976 1.01914 0.99383 1.23585 0.97049 0.99379 1.01317 1.21234 0.94053 0.94801 0.93730 1.61966 1.20594 1.38973 1.04106 1.19383 0.91104 0.95566 0.85327 1.21372 1.23041 1.04421 1.06990 0.93221 1.25708 0.97971 0.99991 0.95151 1.70046 1.38629 1.36606 1.11350 0.85500 0.78482 0.79642 0.78021 1.19768 1.19997 1.20292 1.22029 0.95713 0.95375 0.96540 1.21077 0.80541 0.81470 0.86461 1.90709 1.69568 1.33582 1.47450 1.43397 1.31025 1.24424 1.32355 1.17843 0.92566 0.94081 0.91980 1.21549 0.98520 0.97855 0.94966 1.21421 0.95592 0.98288 0.96028 1.21616 0.99486 0.90955 0.99049 1.19758 1.01114 0.93618 0.99707 1.18733 0.78823 0.88799 0.80013 1.90798 1.60305 1.41230 1.54752 1.45809 1.44291 1.11502 1.34539 1.21451 0.97604 0.83764 0.98853 1.21954 0.98433 1.04374 0.96248 1.21099 0.95564 0.97433 0.97811 0.89886 0.86693 0.86353 0.92305 0.90643 0.99463 0.97560 0.92690 0.87089 0.89623 0.73025 0.81650 0.80307 0.81790 0.74320 0.93062 0.92649 0.89736 0.90508 0.90757 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.19 14.32 67.78 0.97 -5.22 16 2 C -0.19 -7.18 7.75 25.64 0.20 -6.98 16 3 C 0.09 3.94 5.25 85.56 0.45 4.39 16 4 N -0.53 -24.58 4.47 -909.95 -4.07 -28.65 16 5 C 0.21 11.31 4.57 85.56 0.39 11.70 16 6 C -0.52 -30.52 8.25 25.60 0.21 -30.31 16 7 H 0.05 3.01 7.08 -2.92 -0.02 2.99 16 8 C 0.01 0.60 5.46 84.66 0.46 1.06 16 9 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 10 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 C 0.03 1.20 5.20 85.56 0.45 1.64 16 15 C 0.52 17.37 7.31 87.66 0.64 18.01 16 16 O -0.54 -23.41 12.06 -3.06 -0.04 -23.45 16 17 N -0.66 -15.51 5.34 -303.59 -1.62 -17.13 16 18 C 0.13 3.08 6.25 38.11 0.24 3.32 16 19 C -0.11 -1.50 9.96 22.44 0.22 -1.27 16 20 C -0.10 -0.93 10.02 22.21 0.22 -0.71 16 21 C -0.09 -1.21 9.54 22.54 0.22 -1.00 16 22 C -0.14 -3.43 5.87 -20.10 -0.12 -3.55 16 23 C 0.55 15.51 7.77 86.79 0.67 16.19 16 24 O -0.59 -23.78 16.34 -3.87 -0.06 -23.85 16 25 N -0.71 -12.22 5.51 -465.96 -2.57 -14.79 16 26 C 0.11 1.73 6.39 86.38 0.55 2.28 16 27 C -0.15 -1.05 10.03 71.98 0.72 -0.33 16 28 C -0.10 -3.05 8.20 22.66 0.19 -2.87 16 29 H 0.08 3.21 7.84 -2.91 -0.02 3.18 16 30 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.12 3.72 6.59 -2.91 -0.02 3.70 16 32 H 0.06 2.90 6.13 -2.39 -0.01 2.89 16 33 H 0.08 3.38 5.96 -2.39 -0.01 3.37 16 34 H -0.01 -0.69 7.30 -2.39 -0.02 -0.71 16 35 H 0.01 0.36 8.01 -2.39 -0.02 0.34 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.09 16 37 H 0.11 3.56 7.99 -2.39 -0.02 3.54 16 38 H 0.09 2.53 5.99 -2.39 -0.01 2.51 16 39 H 0.43 6.20 8.82 -92.71 -0.82 5.38 16 40 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.16 0.73 6.40 -2.91 -0.02 0.71 16 43 H 0.42 3.56 6.50 -92.71 -0.60 2.96 16 44 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.10 4.09 6.08 -2.91 -0.02 4.07 16 Total: -1.00 -88.58 403.90 0.20 -88.38 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.44 Total: 20.20 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.68 Total: 6.35 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -7.97 Total: -115.72 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.10 Total: -47.29 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -88.58 0.20 -88.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428839943.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.258 kcal (2) G-P(sol) polarization free energy of solvation -88.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds