Wall clock time and date at job start Wed Apr 1 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46813 * 2 1 4 4 C 1.34777 * 119.99998 * 180.02562 * 3 2 1 5 5 O 1.21555 * 119.99747 * 359.97438 * 4 3 2 6 6 C 1.47843 * 120.00143 * 180.02562 * 4 3 2 7 7 C 1.39594 * 120.14616 * 359.97398 * 6 4 3 8 8 C 1.37935 * 119.85379 * 180.02562 * 7 6 4 9 9 C 1.38380 * 120.14913 * 359.74561 * 8 7 6 10 10 C 1.38337 * 120.28596 * 0.51268 * 9 8 7 11 11 C 1.50699 * 119.92476 * 179.76696 * 10 9 8 12 12 N 1.46497 * 109.47293 * 269.72231 * 11 10 9 13 13 C 1.34776 * 120.00194 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00274 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00034 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00258 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47269 * 184.79147 * 16 15 13 18 18 C 1.50694 * 115.55114 * 294.81128 * 17 16 15 19 19 H 1.08008 * 119.99906 * 95.20873 * 18 17 16 20 20 C 1.37875 * 120.00314 * 274.92789 * 18 17 16 21 21 N 1.31509 * 119.99913 * 355.42420 * 20 18 17 22 22 Si 1.86807 * 120.00040 * 175.41703 * 20 18 17 23 23 H 1.48494 * 109.47052 * 60.00642 * 22 20 18 24 24 H 1.48500 * 109.47055 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47106 * 300.00083 * 22 20 18 26 26 C 1.53003 * 117.49834 * 80.48431 * 17 16 15 27 27 C 1.53006 * 117.49908 * 149.14426 * 17 16 15 28 28 C 1.37979 * 120.14820 * 359.48722 * 10 9 8 29 29 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47073 * 300.00142 * 1 2 3 31 31 H 1.08999 * 109.47307 * 60.00177 * 1 2 3 32 32 H 1.09001 * 109.47073 * 239.99858 * 2 1 3 33 33 H 1.08999 * 109.47307 * 119.99823 * 2 1 3 34 34 H 0.96995 * 120.00319 * 359.97438 * 3 2 1 35 35 H 1.07999 * 120.07266 * 359.97438 * 7 6 4 36 36 H 1.08006 * 119.92502 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.85849 * 180.28026 * 9 8 7 38 38 H 1.09007 * 109.47472 * 149.71882 * 11 10 9 39 39 H 1.09003 * 109.47615 * 29.72288 * 11 10 9 40 40 H 0.97004 * 119.99607 * 359.97438 * 12 11 10 41 41 H 0.96999 * 119.99637 * 359.97438 * 15 13 12 42 42 H 1.09001 * 109.47395 * 64.78624 * 16 15 13 43 43 H 1.09007 * 109.47080 * 304.78945 * 16 15 13 44 44 H 0.97001 * 119.99960 * 184.99387 * 21 20 18 45 45 H 1.09003 * 117.50034 * 214.99852 * 26 17 16 46 46 H 1.09002 * 117.49971 * 0.02686 * 26 17 16 47 47 H 1.08996 * 117.49810 * 359.97342 * 27 17 16 48 48 H 1.08995 * 117.50078 * 144.97442 * 27 17 16 49 49 H 1.08003 * 120.07368 * 180.23449 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1332 0.7037 -0.0005 6 6 3.8361 3.0215 0.0001 7 6 2.9316 4.0848 0.0006 8 6 3.3980 5.3829 0.0006 9 6 4.7591 5.6324 0.0054 10 6 5.6608 4.5832 -0.0005 11 6 7.1413 4.8643 -0.0005 12 7 7.6211 4.9554 -1.3817 13 6 8.9230 5.2021 -1.6280 14 8 9.6992 5.3494 -0.7040 15 7 9.3642 5.2864 -2.8988 16 6 10.7794 5.5540 -3.1666 17 6 10.9914 5.7178 -4.6729 18 6 10.7345 4.4867 -5.5031 19 1 9.7710 4.3409 -5.9689 20 6 11.7312 3.5493 -5.6729 21 7 12.9326 3.7716 -5.1864 22 14 11.3750 1.9635 -6.5937 23 1 10.9422 2.2815 -7.9781 24 1 12.6033 1.1301 -6.6377 25 1 10.2963 1.2180 -5.8966 26 6 10.6428 7.0729 -5.2920 27 6 12.1077 6.6586 -5.1310 28 6 5.2075 3.2800 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 1.8691 3.8915 0.0002 36 1 2.6993 6.2065 0.0014 37 1 5.1191 6.6506 0.0099 38 1 7.6644 4.0577 0.5133 39 1 7.3324 5.8064 0.5133 40 1 7.0018 4.8375 -2.1190 41 1 8.7448 5.1693 -3.6360 42 1 11.3817 4.7213 -2.8033 43 1 11.0792 6.4692 -2.6558 44 1 13.6524 3.1470 -5.3675 45 1 10.2278 7.0739 -6.3000 46 1 10.2630 7.8477 -4.6262 47 1 12.6907 7.1610 -4.3593 48 1 12.6565 6.3868 -6.0327 49 1 5.9125 2.4618 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430168331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:12 Heat of formation + Delta-G solvation = -23.267173 kcal Electronic energy + Delta-G solvation = -28804.542760 eV Core-core repulsion = 24731.998518 eV Total energy + Delta-G solvation = -4072.544242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61733 -39.49810 -38.69553 -36.74513 -35.72855 -34.76330 -33.24049 -32.10854 -31.91755 -31.35297 -30.40312 -26.94925 -25.66522 -24.79622 -24.63186 -22.78425 -22.11463 -21.15296 -20.60670 -20.28410 -19.35728 -18.30590 -17.50751 -16.75347 -16.33628 -16.28565 -15.93888 -15.58574 -15.49224 -14.87886 -14.76152 -14.55436 -14.38249 -14.03143 -13.98953 -13.89314 -13.39337 -13.10569 -12.97317 -12.73012 -12.69741 -12.56987 -12.32115 -11.97195 -11.94948 -11.69237 -11.52248 -11.38715 -10.94171 -10.92450 -10.51812 -10.27565 -10.21032 -9.81337 -9.56642 -9.47593 -9.28178 -9.19268 -9.01230 -8.85968 -8.45021 -8.21065 -7.96079 -6.04038 -4.13758 0.47480 0.92051 2.49770 2.73555 3.22875 3.29825 3.35842 3.37524 3.62946 3.80471 4.24114 4.31001 4.38107 4.48775 4.53883 4.61070 4.67798 4.85335 4.88689 4.93089 5.03567 5.23917 5.26701 5.34998 5.40400 5.42542 5.47297 5.55324 5.65771 5.75921 5.89998 5.95838 5.99964 6.06500 6.23228 6.37772 6.48228 6.50971 6.62134 6.72772 6.73705 6.88216 7.06829 7.14936 7.34449 7.44981 7.47508 7.64070 7.84196 7.84508 8.37190 8.66910 8.87116 9.20747 9.53231 11.03134 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.002211 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.139800 B =12663.552488 C =14344.358002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.730 5.730 4 C 0.558 3.442 5 O -0.531 6.531 6 C -0.140 4.140 7 C -0.083 4.083 8 C -0.129 4.129 9 C -0.072 4.072 10 C -0.108 4.108 11 C 0.182 3.818 12 N -0.751 5.751 13 C 0.698 3.302 14 O -0.604 6.604 15 N -0.720 5.720 16 C 0.182 3.818 17 C 0.023 3.977 18 C -0.499 4.499 19 H 0.058 0.942 20 C 0.073 3.927 21 N -0.875 5.875 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.211 4.211 27 C -0.142 4.142 28 C -0.038 4.038 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.395 0.605 41 H 0.397 0.603 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.671 0.674 10.951 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.383 5.383 4 C 0.345 3.655 5 O -0.408 6.408 6 C -0.143 4.143 7 C -0.102 4.102 8 C -0.147 4.147 9 C -0.091 4.091 10 C -0.109 4.109 11 C 0.058 3.942 12 N -0.408 5.408 13 C 0.398 3.602 14 O -0.483 6.483 15 N -0.372 5.372 16 C 0.059 3.941 17 C 0.023 3.977 18 C -0.537 4.537 19 H 0.077 0.923 20 C -0.131 4.131 21 N -0.510 5.510 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.248 4.248 27 C -0.180 4.180 28 C -0.057 4.057 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.152 -0.009 11.876 27.814 hybrid contribution -1.057 -0.671 -1.251 1.770 sum -26.209 -0.680 10.625 28.289 Atomic orbital electron populations 1.22015 0.94297 1.03446 1.02548 1.21336 0.94292 0.82654 1.02754 1.45955 1.06961 1.09148 1.76275 1.18325 0.82205 0.88799 0.76138 1.90815 1.55281 1.45713 1.49009 1.19871 0.94523 0.92534 1.07382 1.21278 0.98864 0.92514 0.97508 1.21097 0.95710 0.96553 1.01336 1.21387 0.92894 0.99364 0.95430 1.19979 0.95808 0.92967 1.02104 1.19928 0.87994 1.02666 0.83657 1.45112 1.08568 1.79455 1.07703 1.16027 0.81660 0.78297 0.84188 1.90874 1.54896 1.58806 1.43733 1.45157 1.12086 1.75208 1.04778 1.20854 0.78317 0.98982 0.95974 1.19059 0.99401 0.89072 0.90204 1.20289 0.98977 1.02895 1.31529 0.92339 1.24983 0.95178 0.97881 0.95044 1.69976 1.00739 1.36801 1.43521 0.86697 0.77777 0.83634 0.80097 1.20345 1.21276 1.20128 1.23009 1.00389 1.00331 1.01064 1.22464 0.89848 1.03374 1.02289 1.21285 0.94408 0.96889 0.93161 0.90595 0.91940 0.91878 0.91215 0.91281 0.76529 0.85786 0.85124 0.85042 0.90707 0.90724 0.77185 0.76975 0.91712 0.94388 0.92823 0.90473 0.91740 0.91788 0.89527 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.03 37.16 0.37 -0.20 16 2 C 0.11 0.74 6.39 -4.04 -0.03 0.71 16 3 N -0.73 -5.25 5.51 -61.25 -0.34 -5.59 16 4 C 0.56 6.10 7.77 -12.33 -0.10 6.00 16 5 O -0.53 -8.05 16.35 5.32 0.09 -7.97 16 6 C -0.14 -1.35 5.87 -104.97 -0.62 -1.97 16 7 C -0.08 -0.56 9.54 -39.19 -0.37 -0.93 16 8 C -0.13 -0.84 10.03 -39.64 -0.40 -1.23 16 9 C -0.07 -0.57 9.69 -39.49 -0.38 -0.96 16 10 C -0.11 -1.08 5.24 -104.68 -0.55 -1.63 16 11 C 0.18 2.25 5.79 -5.20 -0.03 2.22 16 12 N -0.75 -10.77 5.55 -66.41 -0.37 -11.14 16 13 C 0.70 13.47 8.57 -86.91 -0.74 12.72 16 14 O -0.60 -13.95 16.34 5.29 0.09 -13.86 16 15 N -0.72 -14.28 5.48 -65.23 -0.36 -14.64 16 16 C 0.18 4.22 5.50 -4.05 -0.02 4.20 16 17 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 18 C -0.50 -12.96 8.59 -34.44 -0.30 -13.26 16 19 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 20 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 21 N -0.87 -24.56 12.65 55.43 0.70 -23.86 16 22 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 27 C -0.14 -3.28 9.14 -26.69 -0.24 -3.52 16 28 C -0.04 -0.42 9.24 -39.18 -0.36 -0.78 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.40 1.67 6.51 -40.82 -0.27 1.41 16 35 H 0.12 0.44 6.41 -52.49 -0.34 0.11 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.07 1.01 8.08 -51.92 -0.42 0.59 16 39 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.39 4.82 8.48 -40.82 -0.35 4.47 16 41 H 0.40 7.18 8.34 -40.82 -0.34 6.84 16 42 H 0.06 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 44 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 49 H 0.14 1.73 7.65 -52.48 -0.40 1.33 16 LS Contribution 416.33 15.07 6.27 6.27 Total: -1.00 -34.05 416.33 -10.87 -44.91 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.57 Total: 11.05 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -4.36 Total: -1.12 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.36 Total: -55.22 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.05 -10.87 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430168331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.647 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds