Wall clock time and date at job start Wed Apr 1 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46813 * 2 1 4 4 C 1.34777 * 119.99998 * 180.02562 * 3 2 1 5 5 O 1.21555 * 119.99747 * 359.97438 * 4 3 2 6 6 C 1.47843 * 120.00143 * 180.02562 * 4 3 2 7 7 C 1.39594 * 120.14616 * 359.97398 * 6 4 3 8 8 C 1.37935 * 119.85379 * 180.02562 * 7 6 4 9 9 C 1.38380 * 120.14913 * 359.74561 * 8 7 6 10 10 C 1.38337 * 120.28596 * 0.51268 * 9 8 7 11 11 C 1.50699 * 119.92476 * 179.76696 * 10 9 8 12 12 N 1.46497 * 109.47293 * 269.72231 * 11 10 9 13 13 C 1.34776 * 120.00194 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00274 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00034 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00258 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47269 * 184.79147 * 16 15 13 18 18 C 1.50694 * 115.55114 * 294.81128 * 17 16 15 19 19 H 1.08008 * 119.99906 * 95.20873 * 18 17 16 20 20 C 1.37875 * 120.00314 * 274.92789 * 18 17 16 21 21 N 1.31509 * 119.99913 * 355.42420 * 20 18 17 22 22 Si 1.86807 * 120.00040 * 175.41703 * 20 18 17 23 23 H 1.48494 * 109.47052 * 60.00642 * 22 20 18 24 24 H 1.48500 * 109.47055 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47106 * 300.00083 * 22 20 18 26 26 C 1.53003 * 117.49834 * 80.48431 * 17 16 15 27 27 C 1.53006 * 117.49908 * 149.14426 * 17 16 15 28 28 C 1.37979 * 120.14820 * 359.48722 * 10 9 8 29 29 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47073 * 300.00142 * 1 2 3 31 31 H 1.08999 * 109.47307 * 60.00177 * 1 2 3 32 32 H 1.09001 * 109.47073 * 239.99858 * 2 1 3 33 33 H 1.08999 * 109.47307 * 119.99823 * 2 1 3 34 34 H 0.96995 * 120.00319 * 359.97438 * 3 2 1 35 35 H 1.07999 * 120.07266 * 359.97438 * 7 6 4 36 36 H 1.08006 * 119.92502 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.85849 * 180.28026 * 9 8 7 38 38 H 1.09007 * 109.47472 * 149.71882 * 11 10 9 39 39 H 1.09003 * 109.47615 * 29.72288 * 11 10 9 40 40 H 0.97004 * 119.99607 * 359.97438 * 12 11 10 41 41 H 0.96999 * 119.99637 * 359.97438 * 15 13 12 42 42 H 1.09001 * 109.47395 * 64.78624 * 16 15 13 43 43 H 1.09007 * 109.47080 * 304.78945 * 16 15 13 44 44 H 0.97001 * 119.99960 * 184.99387 * 21 20 18 45 45 H 1.09003 * 117.50034 * 214.99852 * 26 17 16 46 46 H 1.09002 * 117.49971 * 0.02686 * 26 17 16 47 47 H 1.08996 * 117.49810 * 359.97342 * 27 17 16 48 48 H 1.08995 * 117.50078 * 144.97442 * 27 17 16 49 49 H 1.08003 * 120.07368 * 180.23449 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1332 0.7037 -0.0005 6 6 3.8361 3.0215 0.0001 7 6 2.9316 4.0848 0.0006 8 6 3.3980 5.3829 0.0006 9 6 4.7591 5.6324 0.0054 10 6 5.6608 4.5832 -0.0005 11 6 7.1413 4.8643 -0.0005 12 7 7.6211 4.9554 -1.3817 13 6 8.9230 5.2021 -1.6280 14 8 9.6992 5.3494 -0.7040 15 7 9.3642 5.2864 -2.8988 16 6 10.7794 5.5540 -3.1666 17 6 10.9914 5.7178 -4.6729 18 6 10.7345 4.4867 -5.5031 19 1 9.7710 4.3409 -5.9689 20 6 11.7312 3.5493 -5.6729 21 7 12.9326 3.7716 -5.1864 22 14 11.3750 1.9635 -6.5937 23 1 10.9422 2.2815 -7.9781 24 1 12.6033 1.1301 -6.6377 25 1 10.2963 1.2180 -5.8966 26 6 10.6428 7.0729 -5.2920 27 6 12.1077 6.6586 -5.1310 28 6 5.2075 3.2800 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 1.8691 3.8915 0.0002 36 1 2.6993 6.2065 0.0014 37 1 5.1191 6.6506 0.0099 38 1 7.6644 4.0577 0.5133 39 1 7.3324 5.8064 0.5133 40 1 7.0018 4.8375 -2.1190 41 1 8.7448 5.1693 -3.6360 42 1 11.3817 4.7213 -2.8033 43 1 11.0792 6.4692 -2.6558 44 1 13.6524 3.1470 -5.3675 45 1 10.2278 7.0739 -6.3000 46 1 10.2630 7.8477 -4.6262 47 1 12.6907 7.1610 -4.3593 48 1 12.6565 6.3868 -6.0327 49 1 5.9125 2.4618 -0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430168331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:11 Heat of formation + Delta-G solvation = -46.901819 kcal Electronic energy + Delta-G solvation = -28805.567635 eV Core-core repulsion = 24731.998518 eV Total energy + Delta-G solvation = -4073.569117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.42183 -40.90948 -39.58411 -38.52310 -36.44887 -35.94489 -34.94857 -33.95022 -32.88517 -32.13697 -30.98643 -28.41260 -27.42540 -26.14369 -25.41301 -23.35672 -22.95438 -22.79767 -21.81998 -21.38928 -21.23230 -19.46046 -18.68713 -18.01400 -17.49641 -17.12281 -16.95567 -16.73670 -16.59837 -16.50430 -15.89405 -15.74265 -15.65546 -15.16948 -15.03916 -14.96367 -14.72399 -14.42499 -14.04355 -13.88038 -13.52055 -13.43001 -13.37780 -13.31288 -12.92682 -12.81265 -12.76855 -12.60204 -12.40733 -12.39913 -12.09650 -12.00103 -11.49981 -11.29531 -11.13081 -10.93426 -10.44061 -10.31726 -10.30937 -10.04630 -9.94856 -9.88714 -9.60464 -8.08976 -6.22621 -0.21210 0.22770 1.41293 1.44523 1.49483 1.67977 1.96555 2.09542 2.23618 2.41717 2.83018 3.19106 3.39238 3.54309 3.63128 3.66214 3.88031 4.06278 4.11338 4.19576 4.25777 4.26845 4.27894 4.49737 4.56849 4.58575 4.65653 4.68599 4.75605 4.83125 4.91641 4.96652 5.00937 5.03739 5.04647 5.23128 5.26795 5.30945 5.35631 5.38009 5.46584 5.50665 5.57669 5.64281 5.73546 5.79198 5.85467 6.12989 6.37562 6.45739 6.84591 7.12660 7.21223 7.46645 7.66334 8.97867 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.002211 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.139800 B =12663.552488 C =14344.358002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.108 3.892 3 N -0.710 5.710 4 C 0.551 3.449 5 O -0.588 6.588 6 C -0.154 4.154 7 C -0.066 4.066 8 C -0.118 4.118 9 C -0.067 4.067 10 C -0.114 4.114 11 C 0.183 3.817 12 N -0.731 5.731 13 C 0.697 3.303 14 O -0.645 6.645 15 N -0.716 5.716 16 C 0.200 3.800 17 C -0.001 4.001 18 C -0.502 4.502 19 H 0.063 0.937 20 C 0.023 3.977 21 N -0.907 5.907 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.276 1.276 26 C -0.174 4.174 27 C -0.153 4.153 28 C -0.058 4.058 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.417 0.583 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.149 0.851 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.408 0.592 41 H 0.407 0.593 42 H 0.020 0.980 43 H 0.038 0.962 44 H 0.259 0.741 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.082 2.451 10.613 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.016 4.016 3 N -0.364 5.364 4 C 0.340 3.660 5 O -0.470 6.470 6 C -0.158 4.158 7 C -0.084 4.084 8 C -0.136 4.136 9 C -0.086 4.086 10 C -0.115 4.115 11 C 0.059 3.941 12 N -0.387 5.387 13 C 0.396 3.604 14 O -0.527 6.527 15 N -0.369 5.369 16 C 0.075 3.925 17 C -0.002 4.002 18 C -0.540 4.540 19 H 0.081 0.919 20 C -0.178 4.178 21 N -0.545 5.545 22 Si 0.774 3.226 23 H -0.192 1.192 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.191 4.191 28 C -0.078 4.078 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.167 0.833 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.244 0.756 41 H 0.242 0.758 42 H 0.039 0.961 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -29.683 1.785 11.516 31.889 hybrid contribution 0.205 -1.200 -1.094 1.636 sum -29.479 0.586 10.423 31.273 Atomic orbital electron populations 1.21964 0.91302 1.04371 1.03620 1.21434 0.96622 0.82041 1.01468 1.45862 1.06015 1.10185 1.74321 1.18671 0.82965 0.88896 0.75515 1.90784 1.56872 1.47347 1.51952 1.19862 0.94380 0.92775 1.08737 1.21681 1.00211 0.91655 0.94886 1.21524 0.95448 0.97410 0.99185 1.21634 0.93441 0.99340 0.94141 1.19665 0.94405 0.93233 1.04196 1.19978 0.89758 1.02211 0.82137 1.44984 1.06908 1.77600 1.09243 1.16176 0.82803 0.78019 0.83356 1.90844 1.56475 1.60600 1.44814 1.44936 1.11000 1.75485 1.05481 1.20404 0.79524 0.97075 0.95499 1.19086 1.00957 0.89874 0.90240 1.20619 0.98856 1.03539 1.30959 0.91876 1.25697 0.95176 1.00659 0.96219 1.70100 1.01484 1.37744 1.45123 0.85778 0.77181 0.80219 0.79411 1.19195 1.21744 1.20172 1.22988 0.98008 0.98572 1.01529 1.22390 0.90972 1.04063 1.01666 1.21132 0.95006 0.96577 0.95104 0.89827 0.90690 0.90855 0.92771 0.92522 0.74443 0.81956 0.81316 0.83310 0.92729 0.90111 0.75628 0.75799 0.96118 0.94413 0.93245 0.89633 0.89276 0.91195 0.91660 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 10.03 71.98 0.72 0.03 16 2 C 0.11 1.33 6.39 86.38 0.55 1.89 16 3 N -0.71 -9.17 5.51 -465.97 -2.57 -11.74 16 4 C 0.55 12.08 7.77 86.79 0.67 12.76 16 5 O -0.59 -19.06 16.35 -3.89 -0.06 -19.12 16 6 C -0.15 -2.83 5.87 -20.09 -0.12 -2.95 16 7 C -0.07 -0.63 9.54 22.53 0.21 -0.41 16 8 C -0.12 -0.97 10.03 22.23 0.22 -0.74 16 9 C -0.07 -0.85 9.69 22.33 0.22 -0.64 16 10 C -0.11 -2.20 5.24 -19.90 -0.10 -2.31 16 11 C 0.18 4.57 5.79 85.63 0.50 5.06 16 12 N -0.73 -20.80 5.55 -482.29 -2.68 -23.48 16 13 C 0.70 27.14 8.57 179.05 1.53 28.67 16 14 O -0.64 -30.61 16.34 -3.97 -0.06 -30.68 16 15 N -0.72 -28.40 5.48 -478.55 -2.62 -31.03 16 16 C 0.20 9.42 5.50 86.38 0.48 9.89 16 17 C 0.00 -0.04 1.47 -52.93 -0.08 -0.11 16 18 C -0.50 -26.01 8.59 25.60 0.22 -25.79 16 19 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 20 C 0.02 1.26 5.43 84.65 0.46 1.72 16 21 N -0.91 -52.30 12.65 21.45 0.27 -52.03 16 22 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 C -0.17 -6.96 9.96 30.62 0.30 -6.66 16 27 C -0.15 -7.07 9.14 30.62 0.28 -6.79 16 28 C -0.06 -1.32 9.24 22.53 0.21 -1.11 16 29 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.42 2.10 6.51 -92.71 -0.60 1.50 16 35 H 0.16 0.24 6.41 -2.91 -0.02 0.22 16 36 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.05 1.58 8.08 -2.38 -0.02 1.56 16 39 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 40 H 0.41 9.56 8.48 -92.71 -0.79 8.77 16 41 H 0.41 14.36 8.34 -92.71 -0.77 13.59 16 42 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 1.76 8.09 -2.38 -0.02 1.74 16 44 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 45 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 48 H 0.06 3.28 8.14 -2.39 -0.02 3.26 16 49 H 0.11 3.06 7.65 -2.91 -0.02 3.04 16 Total: -1.00 -78.24 416.33 -0.59 -78.84 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -1.18 Total: 31.26 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.28 Total: 12.49 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -7.60 Total: -118.27 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.13 Total: -49.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -78.24 -0.59 -78.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430168331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.937 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds