Wall clock time and date at job start Wed Apr 1 2020 03:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47193 * 2 1 4 4 C 1.46500 * 120.00173 * 264.92110 * 3 2 1 5 5 C 1.50702 * 109.47193 * 273.79123 * 4 3 2 6 6 H 1.08000 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99985 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99873 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47226 * 60.00212 * 9 7 5 11 11 H 1.48495 * 109.47474 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46950 * 300.00366 * 9 7 5 13 13 C 1.34774 * 119.99805 * 84.91871 * 3 2 1 14 14 O 1.21287 * 119.99949 * 5.24664 * 13 3 2 15 15 C 1.50700 * 120.00120 * 185.24409 * 13 3 2 16 16 H 1.09000 * 110.88683 * 41.02011 * 15 13 3 17 17 C 1.54630 * 110.96734 * 277.20834 * 15 13 3 18 18 C 1.51288 * 104.31219 * 266.74278 * 17 15 13 19 19 O 1.21280 * 124.93942 * 163.71987 * 18 17 15 20 20 N 1.34416 * 110.11677 * 343.68139 * 18 17 15 21 21 C 1.46501 * 124.35171 * 179.61063 * 20 18 17 22 22 C 1.52998 * 109.46811 * 89.97707 * 21 20 18 23 23 C 1.46767 * 111.30055 * 359.59461 * 20 18 17 24 24 H 1.09001 * 110.24533 * 136.10293 * 23 20 18 25 25 C 1.50695 * 110.24631 * 258.01099 * 23 20 18 26 26 C 1.38668 * 120.42029 * 218.26908 * 25 23 20 27 27 C 1.38634 * 118.42280 * 179.78387 * 26 25 23 28 28 C 1.38227 * 119.15810 * 0.51190 * 27 26 25 29 29 N 1.31855 * 120.76163 * 359.72427 * 28 27 26 30 30 C 1.31887 * 121.72756 * 0.02562 * 29 28 27 31 31 H 1.08990 * 109.47547 * 64.85804 * 1 2 3 32 32 H 1.09004 * 109.46744 * 184.86163 * 1 2 3 33 33 H 1.08998 * 109.46849 * 304.85432 * 1 2 3 34 34 H 1.09009 * 109.47191 * 240.00565 * 2 1 3 35 35 H 1.09003 * 109.47598 * 120.00460 * 2 1 3 36 36 H 1.09002 * 109.47112 * 33.79642 * 4 3 2 37 37 H 1.09003 * 109.46763 * 153.78917 * 4 3 2 38 38 H 0.96998 * 119.99677 * 179.97438 * 8 7 5 39 39 H 1.09002 * 110.48142 * 148.00092 * 17 15 13 40 40 H 1.08998 * 110.49129 * 25.49116 * 17 15 13 41 41 H 1.08996 * 109.47056 * 209.98064 * 21 20 18 42 42 H 1.09005 * 109.46784 * 329.97851 * 21 20 18 43 43 H 1.09002 * 109.46510 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47602 * 300.00023 * 22 21 20 45 45 H 1.08999 * 109.47007 * 60.00772 * 22 21 20 46 46 H 1.08001 * 120.79051 * 0.02562 * 26 25 23 47 47 H 1.07997 * 120.42375 * 180.22029 * 27 26 25 48 48 H 1.07996 * 119.61823 * 179.74876 * 28 27 26 49 49 H 1.08006 * 119.61497 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3684 2.0344 -1.2637 5 6 3.7966 1.7096 -1.6183 6 1 4.3846 1.0793 -0.9677 7 6 4.3523 2.2162 -2.7740 8 7 3.6361 2.9834 -3.5665 9 14 6.1224 1.8131 -3.2139 10 1 6.2742 0.3428 -3.3576 11 1 6.4773 2.4752 -4.4948 12 1 7.0231 2.3010 -2.1388 13 6 2.1455 2.0510 1.1626 14 8 1.9472 1.4818 2.2152 15 6 2.5340 3.5070 1.1549 16 1 2.0196 4.0422 0.3567 17 6 4.0668 3.6701 1.0321 18 6 4.5482 3.7682 2.4630 19 8 5.6982 3.6244 2.8204 20 7 3.5161 4.0389 3.2805 21 6 3.6300 4.1916 4.7330 22 6 3.9082 5.6576 5.0713 23 6 2.2603 4.1620 2.5309 24 1 1.4590 3.6343 3.0481 25 6 1.8984 5.6142 2.3546 26 6 0.5760 6.0233 2.4369 27 6 0.2904 7.3699 2.2728 28 6 1.3248 8.2522 2.0236 29 7 2.5705 7.8268 1.9471 30 6 2.8795 6.5541 2.1029 31 1 -0.3634 0.4366 -0.9302 32 1 -0.3633 -1.0240 0.0871 33 1 -0.3633 0.5873 0.8433 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.7075 1.6763 -2.0531 37 1 2.2566 3.1136 -1.1580 38 1 4.0272 3.3402 -4.3793 39 1 4.3108 4.5802 0.4842 40 1 4.5048 2.8012 0.5410 41 1 2.6984 3.8802 5.2053 42 1 4.4484 3.5723 5.1004 43 1 3.9934 5.7711 6.1520 44 1 4.8399 5.9690 4.5990 45 1 3.0899 6.2768 4.7040 46 1 -0.2124 5.3103 2.6283 47 1 -0.7279 7.7244 2.3340 48 1 1.1103 9.3023 1.8905 49 1 3.9114 6.2430 2.0329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448769653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:59 Heat of formation + Delta-G solvation = -31.316920 kcal Electronic energy + Delta-G solvation = -32255.296837 eV Core-core repulsion = 28182.403532 eV Total energy + Delta-G solvation = -4072.893305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29900 -39.71726 -38.78370 -36.35365 -35.27484 -33.93304 -32.85306 -32.58762 -31.35856 -30.70303 -29.23081 -27.38005 -27.02675 -24.63884 -23.62889 -23.11718 -22.95706 -22.56813 -21.20894 -19.17954 -18.49529 -17.52828 -16.79709 -16.65002 -16.59761 -16.12589 -15.74493 -15.37525 -14.94067 -14.68839 -14.48670 -14.29706 -14.03864 -13.81976 -13.45724 -13.41104 -13.30935 -13.14232 -12.91048 -12.79092 -12.50560 -12.20517 -12.03747 -11.96939 -11.79832 -11.61541 -11.53146 -11.35350 -11.23565 -11.06896 -10.99595 -10.80043 -10.52374 -10.14024 -9.88435 -9.82302 -9.56336 -9.48733 -9.25940 -8.96937 -8.61944 -8.60483 -7.84517 -6.24998 -4.32779 0.98394 1.19303 2.85633 3.07059 3.17300 3.24233 3.28979 3.34273 3.60884 3.82039 4.28726 4.35242 4.56809 4.63071 4.67768 4.78953 4.89639 4.97747 5.07713 5.08411 5.14565 5.19959 5.27284 5.38460 5.41082 5.51622 5.61790 5.66882 5.71553 5.74511 5.79096 5.81337 5.88292 5.99657 6.07690 6.11799 6.17221 6.19841 6.32997 6.45419 6.55183 6.58912 6.68161 6.73968 7.06504 7.28840 7.41430 7.68876 7.91028 7.96064 8.20386 8.42627 8.68167 8.85104 9.35896 10.81337 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.004380 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.433740 B = 6391.499201 C = 6751.568267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.235 3.765 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.524 3.476 14 O -0.566 6.566 15 C -0.105 4.105 16 H 0.121 0.879 17 C -0.141 4.141 18 C 0.521 3.479 19 O -0.531 6.531 20 N -0.607 5.607 21 C 0.127 3.873 22 C -0.168 4.168 23 C 0.195 3.805 24 H 0.108 0.892 25 C -0.145 4.145 26 C -0.062 4.062 27 C -0.173 4.173 28 C 0.095 3.905 29 N -0.483 5.483 30 C 0.123 3.877 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.154 0.846 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 6.290 10.961 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.319 5.319 4 C 0.115 3.885 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.311 3.689 14 O -0.447 6.447 15 C -0.126 4.126 16 H 0.139 0.861 17 C -0.182 4.182 18 C 0.310 3.690 19 O -0.407 6.407 20 N -0.340 5.340 21 C 0.005 3.995 22 C -0.227 4.227 23 C 0.090 3.910 24 H 0.125 0.875 25 C -0.148 4.148 26 C -0.089 4.089 27 C -0.193 4.193 28 C -0.061 4.061 29 N -0.191 5.191 30 C -0.034 4.034 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.171 0.829 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.739 6.609 11.398 15.280 hybrid contribution 0.160 -0.691 -0.467 0.849 sum -7.579 5.918 10.931 14.558 Atomic orbital electron populations 1.22103 0.96792 1.01344 1.01812 1.21251 0.93289 0.83559 1.02681 1.48216 1.62132 1.13336 1.08177 1.19519 0.96166 0.93448 0.79361 1.21384 0.97043 1.32140 1.07357 0.92018 1.24891 0.98084 0.94562 0.95811 1.69899 1.36806 1.32652 1.13229 0.86644 0.84658 0.78836 0.78032 1.20090 1.21100 1.19680 1.19920 0.77185 0.88002 0.83813 1.90615 1.53132 1.69731 1.31177 1.22254 0.98298 0.95074 0.97014 0.86136 1.22429 0.93575 1.07715 0.94442 1.21071 0.84654 0.74535 0.88739 1.90689 1.18541 1.50680 1.80824 1.48212 1.08389 1.70575 1.06806 1.21269 1.02645 0.96724 0.78883 1.22210 1.02287 0.96751 1.01418 1.20298 0.88138 0.90216 0.92391 0.87464 1.21135 0.94657 0.96995 1.02010 1.21443 0.95767 0.96126 0.95549 1.22104 1.00961 0.94026 1.02180 1.22799 0.88045 1.00263 0.95036 1.67746 1.21525 1.17131 1.12670 1.22570 0.99685 0.87875 0.93310 0.92622 0.92370 0.92861 0.90104 0.91259 0.94606 0.94207 0.92361 0.87086 0.85151 0.90534 0.90030 0.91768 0.92172 0.92654 0.84590 0.84727 0.82895 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.20 37.16 0.38 -1.97 16 2 C 0.12 1.99 6.14 -4.04 -0.02 1.96 16 3 N -0.59 -11.33 2.47 -175.05 -0.43 -11.76 16 4 C 0.23 5.08 4.91 -5.19 -0.03 5.06 16 5 C -0.54 -13.11 7.76 -34.44 -0.27 -13.37 16 6 H 0.06 1.55 7.71 -52.49 -0.40 1.14 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 9 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 13 C 0.52 9.81 6.79 -10.99 -0.07 9.74 16 14 O -0.57 -11.48 15.42 5.55 0.09 -11.39 16 15 C -0.10 -1.71 2.08 -89.95 -0.19 -1.90 16 16 H 0.12 1.92 6.38 -51.93 -0.33 1.59 16 17 C -0.14 -2.53 5.54 -26.74 -0.15 -2.68 16 18 C 0.52 9.49 6.95 -10.86 -0.08 9.41 16 19 O -0.53 -11.33 17.60 5.56 0.10 -11.23 16 20 N -0.61 -9.14 2.09 -165.98 -0.35 -9.49 16 21 C 0.13 1.61 6.64 -4.04 -0.03 1.59 16 22 C -0.17 -1.91 9.77 37.16 0.36 -1.55 16 23 C 0.20 2.72 2.59 -67.97 -0.18 2.55 16 24 H 0.11 1.48 7.23 -51.93 -0.38 1.10 16 25 C -0.14 -1.80 4.29 -104.49 -0.45 -2.25 16 26 C -0.06 -0.65 9.84 -39.28 -0.39 -1.03 16 27 C -0.17 -1.61 10.11 -39.44 -0.40 -2.01 16 28 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 29 N -0.48 -6.57 10.36 -13.25 -0.14 -6.71 16 30 C 0.12 1.68 8.86 -17.55 -0.16 1.53 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.39 8.03 -51.92 -0.42 0.98 16 35 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 36 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.04 0.87 5.84 -51.93 -0.30 0.57 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 39 H 0.11 1.87 7.87 -51.93 -0.41 1.46 16 40 H 0.13 2.71 6.16 -51.93 -0.32 2.39 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 46 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 49 H 0.15 2.18 6.23 -52.48 -0.33 1.85 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -30.05 398.09 -8.35 -38.41 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.39 Total: 6.00 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -1.95 Total: 7.57 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.18 Total: -50.49 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.62 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.05 -8.35 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448769653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.092 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds