Wall clock time and date at job start Wed Apr 1 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47193 * 2 1 4 4 C 1.46500 * 120.00173 * 264.92110 * 3 2 1 5 5 C 1.50702 * 109.47193 * 273.79123 * 4 3 2 6 6 H 1.08000 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99985 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99873 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47226 * 60.00212 * 9 7 5 11 11 H 1.48495 * 109.47474 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46950 * 300.00366 * 9 7 5 13 13 C 1.34774 * 119.99805 * 84.91871 * 3 2 1 14 14 O 1.21287 * 119.99949 * 5.24664 * 13 3 2 15 15 C 1.50700 * 120.00120 * 185.24409 * 13 3 2 16 16 H 1.09000 * 110.88683 * 41.02011 * 15 13 3 17 17 C 1.54630 * 110.96734 * 277.20834 * 15 13 3 18 18 C 1.51288 * 104.31219 * 266.74278 * 17 15 13 19 19 O 1.21280 * 124.93942 * 163.71987 * 18 17 15 20 20 N 1.34416 * 110.11677 * 343.68139 * 18 17 15 21 21 C 1.46501 * 124.35171 * 179.61063 * 20 18 17 22 22 C 1.52998 * 109.46811 * 89.97707 * 21 20 18 23 23 C 1.46767 * 111.30055 * 359.59461 * 20 18 17 24 24 H 1.09001 * 110.24533 * 136.10293 * 23 20 18 25 25 C 1.50695 * 110.24631 * 258.01099 * 23 20 18 26 26 C 1.38668 * 120.42029 * 218.26908 * 25 23 20 27 27 C 1.38634 * 118.42280 * 179.78387 * 26 25 23 28 28 C 1.38227 * 119.15810 * 0.51190 * 27 26 25 29 29 N 1.31855 * 120.76163 * 359.72427 * 28 27 26 30 30 C 1.31887 * 121.72756 * 0.02562 * 29 28 27 31 31 H 1.08990 * 109.47547 * 64.85804 * 1 2 3 32 32 H 1.09004 * 109.46744 * 184.86163 * 1 2 3 33 33 H 1.08998 * 109.46849 * 304.85432 * 1 2 3 34 34 H 1.09009 * 109.47191 * 240.00565 * 2 1 3 35 35 H 1.09003 * 109.47598 * 120.00460 * 2 1 3 36 36 H 1.09002 * 109.47112 * 33.79642 * 4 3 2 37 37 H 1.09003 * 109.46763 * 153.78917 * 4 3 2 38 38 H 0.96998 * 119.99677 * 179.97438 * 8 7 5 39 39 H 1.09002 * 110.48142 * 148.00092 * 17 15 13 40 40 H 1.08998 * 110.49129 * 25.49116 * 17 15 13 41 41 H 1.08996 * 109.47056 * 209.98064 * 21 20 18 42 42 H 1.09005 * 109.46784 * 329.97851 * 21 20 18 43 43 H 1.09002 * 109.46510 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47602 * 300.00023 * 22 21 20 45 45 H 1.08999 * 109.47007 * 60.00772 * 22 21 20 46 46 H 1.08001 * 120.79051 * 0.02562 * 26 25 23 47 47 H 1.07997 * 120.42375 * 180.22029 * 27 26 25 48 48 H 1.07996 * 119.61823 * 179.74876 * 28 27 26 49 49 H 1.08006 * 119.61497 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3684 2.0344 -1.2637 5 6 3.7966 1.7096 -1.6183 6 1 4.3846 1.0793 -0.9677 7 6 4.3523 2.2162 -2.7740 8 7 3.6361 2.9834 -3.5665 9 14 6.1224 1.8131 -3.2139 10 1 6.2742 0.3428 -3.3576 11 1 6.4773 2.4752 -4.4948 12 1 7.0231 2.3010 -2.1388 13 6 2.1455 2.0510 1.1626 14 8 1.9472 1.4818 2.2152 15 6 2.5340 3.5070 1.1549 16 1 2.0196 4.0422 0.3567 17 6 4.0668 3.6701 1.0321 18 6 4.5482 3.7682 2.4630 19 8 5.6982 3.6244 2.8204 20 7 3.5161 4.0389 3.2805 21 6 3.6300 4.1916 4.7330 22 6 3.9082 5.6576 5.0713 23 6 2.2603 4.1620 2.5309 24 1 1.4590 3.6343 3.0481 25 6 1.8984 5.6142 2.3546 26 6 0.5760 6.0233 2.4369 27 6 0.2904 7.3699 2.2728 28 6 1.3248 8.2522 2.0236 29 7 2.5705 7.8268 1.9471 30 6 2.8795 6.5541 2.1029 31 1 -0.3634 0.4366 -0.9302 32 1 -0.3633 -1.0240 0.0871 33 1 -0.3633 0.5873 0.8433 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.7075 1.6763 -2.0531 37 1 2.2566 3.1136 -1.1580 38 1 4.0272 3.3402 -4.3793 39 1 4.3108 4.5802 0.4842 40 1 4.5048 2.8012 0.5410 41 1 2.6984 3.8802 5.2053 42 1 4.4484 3.5723 5.1004 43 1 3.9934 5.7711 6.1520 44 1 4.8399 5.9690 4.5990 45 1 3.0899 6.2768 4.7040 46 1 -0.2124 5.3103 2.6283 47 1 -0.7279 7.7244 2.3340 48 1 1.1103 9.3023 1.8905 49 1 3.9114 6.2430 2.0329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448769653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:58 Heat of formation + Delta-G solvation = -47.793577 kcal Electronic energy + Delta-G solvation = -32256.011318 eV Core-core repulsion = 28182.403532 eV Total energy + Delta-G solvation = -4073.607787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55134 -40.79791 -40.24407 -37.75216 -36.87633 -35.14453 -34.64848 -33.57440 -32.37521 -31.99304 -30.48038 -29.00129 -28.44755 -25.82365 -24.93410 -24.56258 -24.06898 -23.70221 -22.43589 -20.48528 -20.00358 -18.67229 -18.52690 -18.01583 -17.76295 -17.29016 -17.20470 -16.68111 -16.38641 -16.13803 -15.85666 -15.62391 -15.17325 -14.99246 -14.69458 -14.57948 -14.45089 -14.39403 -14.15631 -14.00310 -13.88953 -13.58751 -13.53116 -13.21751 -13.07881 -13.06746 -12.80007 -12.75433 -12.66846 -12.56586 -12.49099 -12.10845 -12.07987 -11.77253 -11.67459 -10.96865 -10.84987 -10.68096 -10.51707 -10.47954 -10.00016 -9.79635 -9.47116 -8.20435 -6.31854 0.09880 0.35443 1.39767 1.40710 1.43875 1.48433 1.62915 1.89731 2.22180 2.42022 2.82505 3.10533 3.26540 3.34015 3.41143 3.58801 3.73415 3.83431 3.97979 4.05352 4.06800 4.14918 4.21365 4.28702 4.34729 4.43959 4.45299 4.52343 4.57378 4.61368 4.71873 4.76737 4.80954 4.83013 4.87656 4.95377 5.01095 5.09785 5.18668 5.21563 5.22496 5.24351 5.34945 5.55733 5.66613 5.76992 5.84498 5.96343 6.06494 6.55666 6.80874 7.02065 7.03592 7.25022 7.40715 8.84414 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.004380 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.433740 B = 6391.499201 C = 6751.568267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 N -0.593 5.593 4 C 0.251 3.749 5 C -0.539 4.539 6 H 0.048 0.952 7 C 0.035 3.965 8 N -0.911 5.911 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.522 3.478 14 O -0.579 6.579 15 C -0.099 4.099 16 H 0.126 0.874 17 C -0.138 4.138 18 C 0.517 3.483 19 O -0.572 6.572 20 N -0.598 5.598 21 C 0.120 3.880 22 C -0.156 4.156 23 C 0.206 3.794 24 H 0.119 0.881 25 C -0.151 4.151 26 C -0.059 4.059 27 C -0.159 4.159 28 C 0.089 3.911 29 N -0.513 5.513 30 C 0.108 3.892 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.039 0.961 38 H 0.267 0.733 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.162 0.838 47 H 0.173 0.827 48 H 0.181 0.819 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 7.144 11.989 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 N -0.323 5.323 4 C 0.130 3.870 5 C -0.578 4.578 6 H 0.066 0.934 7 C -0.167 4.167 8 N -0.550 5.550 9 Si 0.762 3.238 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.311 3.689 14 O -0.461 6.461 15 C -0.120 4.120 16 H 0.144 0.856 17 C -0.179 4.179 18 C 0.306 3.694 19 O -0.452 6.452 20 N -0.329 5.329 21 C -0.001 4.001 22 C -0.214 4.214 23 C 0.101 3.899 24 H 0.136 0.864 25 C -0.155 4.155 26 C -0.085 4.085 27 C -0.178 4.178 28 C -0.067 4.067 29 N -0.222 5.222 30 C -0.049 4.049 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.180 0.820 47 H 0.191 0.809 48 H 0.198 0.802 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.393 7.453 12.442 17.843 hybrid contribution 0.912 -0.930 -0.746 1.501 sum -9.481 6.523 11.696 16.408 Atomic orbital electron populations 1.21992 0.94212 1.02969 1.01627 1.21411 0.95406 0.82405 1.02153 1.48226 1.62326 1.14140 1.07572 1.19167 0.94417 0.93390 0.80025 1.21525 0.98173 1.31278 1.06830 0.93419 1.25387 1.00537 0.94730 0.96010 1.69954 1.37833 1.33621 1.13626 0.85942 0.81595 0.78630 0.77592 1.19838 1.20580 1.20442 1.20231 0.76606 0.88779 0.83330 1.90598 1.53791 1.70323 1.31409 1.22211 0.96875 0.93910 0.99050 0.85584 1.22284 0.94730 1.06407 0.94459 1.21069 0.84649 0.74481 0.89192 1.90652 1.20184 1.52983 1.81412 1.48290 1.07979 1.68891 1.07751 1.21519 1.03598 0.97633 0.77319 1.22090 1.01060 0.95447 1.02786 1.20281 0.87536 0.91454 0.90613 0.86380 1.20904 0.95646 0.95340 1.03577 1.21784 0.95098 0.97331 0.94320 1.22498 1.02358 0.93130 0.99833 1.23369 0.87390 1.01976 0.93993 1.67705 1.23526 1.17045 1.13883 1.22291 0.99098 0.88593 0.94922 0.92547 0.89808 0.93222 0.90544 0.91860 0.95736 0.94337 0.92348 0.86733 0.88283 0.87878 0.91195 0.89250 0.94439 0.92536 0.82037 0.80923 0.80222 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 10.20 71.98 0.73 -3.34 16 2 C 0.11 3.70 6.14 86.38 0.53 4.23 16 3 N -0.59 -22.85 2.47 -826.13 -2.04 -24.89 16 4 C 0.25 10.97 4.91 85.63 0.42 11.39 16 5 C -0.54 -26.65 7.76 25.60 0.20 -26.45 16 6 H 0.05 2.46 7.71 -2.91 -0.02 2.44 16 7 C 0.03 1.77 5.46 84.65 0.46 2.23 16 8 N -0.91 -48.05 13.29 21.45 0.28 -47.76 16 9 Si 0.94 41.87 29.54 68.60 2.03 43.90 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.52 19.48 6.79 87.66 0.60 20.08 16 14 O -0.58 -23.11 15.42 -3.05 -0.05 -23.15 16 15 C -0.10 -3.24 2.08 -10.36 -0.02 -3.26 16 16 H 0.13 3.98 6.38 -2.39 -0.02 3.97 16 17 C -0.14 -5.18 5.54 30.59 0.17 -5.01 16 18 C 0.52 19.62 6.95 87.90 0.61 20.23 16 19 O -0.57 -25.72 17.60 -3.03 -0.05 -25.77 16 20 N -0.60 -18.02 2.09 -797.62 -1.67 -19.69 16 21 C 0.12 2.96 6.64 86.38 0.57 3.53 16 22 C -0.16 -3.39 9.77 71.98 0.70 -2.69 16 23 C 0.21 5.54 2.59 44.82 0.12 5.66 16 24 H 0.12 2.98 7.23 -2.39 -0.02 2.96 16 25 C -0.15 -3.54 4.29 -19.78 -0.08 -3.62 16 26 C -0.06 -1.02 9.84 22.47 0.22 -0.80 16 27 C -0.16 -2.30 10.11 22.36 0.23 -2.07 16 28 C 0.09 1.66 11.18 84.69 0.95 2.61 16 29 N -0.51 -13.47 10.36 -195.84 -2.03 -15.50 16 30 C 0.11 2.92 8.86 84.67 0.75 3.67 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 2.63 8.03 -2.38 -0.02 2.61 16 35 H 0.06 2.22 7.51 -2.39 -0.02 2.20 16 36 H 0.02 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.04 1.71 5.84 -2.39 -0.01 1.69 16 38 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 39 H 0.11 4.11 7.87 -2.39 -0.02 4.09 16 40 H 0.10 4.35 6.16 -2.39 -0.01 4.34 16 41 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 42 H 0.07 1.91 7.93 -2.38 -0.02 1.89 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.23 6.57 -2.39 -0.02 1.21 16 46 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 49 H 0.13 3.88 6.23 -2.91 -0.02 3.86 16 Total: -1.00 -66.33 398.09 4.58 -61.75 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.95 Total: 24.72 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: 7.15 Total: 26.39 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -5.45 Total: -107.84 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -0.10 Total: -48.92 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.33 4.58 -61.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448769653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.955 kcal (2) G-P(sol) polarization free energy of solvation -66.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds