Wall clock time and date at job start Wed Apr 1 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47072 * 2 1 4 4 C 1.42900 * 114.00152 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47392 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47138 * 179.54407 * 5 4 3 7 7 C 1.52999 * 112.85181 * 294.46482 * 6 5 4 8 8 N 1.46501 * 109.47109 * 293.50623 * 7 6 5 9 9 S 1.65595 * 119.99944 * 164.72617 * 8 7 6 10 10 O 1.42100 * 104.27699 * 181.06862 * 9 8 7 11 11 O 1.42101 * 104.27903 * 308.92682 * 9 8 7 12 12 C 1.81404 * 104.45081 * 64.99689 * 9 8 7 13 13 C 1.53005 * 109.47308 * 176.03250 * 12 9 8 14 14 C 1.50701 * 115.54557 * 54.36658 * 13 12 9 15 15 H 1.08006 * 119.99689 * 265.13123 * 14 13 12 16 16 C 1.37874 * 120.00274 * 85.12848 * 14 13 12 17 17 N 1.31515 * 119.99730 * 1.80197 * 16 14 13 18 18 Si 1.86798 * 119.99976 * 181.79909 * 16 14 13 19 19 H 1.48504 * 109.47274 * 60.00512 * 18 16 14 20 20 H 1.48502 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47068 * 300.00225 * 18 16 14 22 22 C 1.52998 * 117.50173 * 268.69590 * 13 12 9 23 23 C 1.52997 * 117.49922 * 200.03126 * 13 12 9 24 24 C 1.53783 * 113.61167 * 163.26934 * 6 5 4 25 25 C 1.53962 * 87.01788 * 220.05057 * 24 6 5 26 26 C 1.53780 * 87.11097 * 25.36401 * 25 24 6 27 27 H 1.09007 * 109.46930 * 60.00028 * 1 2 3 28 28 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47419 * 300.00227 * 1 2 3 30 30 H 1.08998 * 109.47063 * 240.00183 * 2 1 3 31 31 H 1.08998 * 109.46738 * 119.99863 * 2 1 3 32 32 H 1.09000 * 109.47181 * 300.00413 * 4 3 2 33 33 H 1.09003 * 109.46629 * 59.99760 * 4 3 2 34 34 H 1.08993 * 109.47193 * 299.54601 * 5 4 3 35 35 H 1.09005 * 109.47033 * 59.54549 * 5 4 3 36 36 H 1.08998 * 109.46924 * 53.50422 * 7 6 5 37 37 H 1.09001 * 109.47095 * 173.50206 * 7 6 5 38 38 H 0.97003 * 119.99921 * 344.72389 * 8 7 6 39 39 H 1.09001 * 109.47478 * 296.03892 * 12 9 8 40 40 H 1.09004 * 109.46778 * 56.03903 * 12 9 8 41 41 H 0.97004 * 119.99553 * 185.01463 * 17 16 14 42 42 H 1.09004 * 117.49951 * 359.97438 * 22 13 12 43 43 H 1.08994 * 117.50114 * 145.02175 * 22 13 12 44 44 H 1.09001 * 117.49768 * 214.98171 * 23 13 12 45 45 H 1.08999 * 117.50044 * 359.97438 * 23 13 12 46 46 H 1.08995 * 113.61649 * 334.56777 * 24 6 5 47 47 H 1.08997 * 113.61583 * 105.47384 * 24 6 5 48 48 H 1.09003 * 113.53443 * 270.81669 * 25 24 6 49 49 H 1.08998 * 113.74343 * 139.94630 * 25 24 6 50 50 H 1.09004 * 113.61456 * 220.09744 * 26 25 24 51 51 H 1.08991 * 113.69219 * 89.19787 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3506 3.0592 0.0133 7 6 5.9786 2.5263 1.3026 8 7 5.5832 3.3783 2.4269 9 16 5.7905 2.8470 3.9815 10 8 5.2822 3.9039 4.7838 11 8 5.1866 1.5607 3.9957 12 6 7.5887 2.7080 4.1763 13 6 7.9167 2.3150 5.6182 14 6 7.2308 1.0725 6.1252 15 1 6.3079 1.1535 6.6802 16 6 7.7815 -0.1676 5.8803 17 7 8.9234 -0.2642 5.2352 18 14 6.9056 -1.7104 6.4650 19 1 5.5616 -1.7846 5.8376 20 1 7.6985 -2.9057 6.0804 21 1 6.7606 -1.6675 7.9423 22 6 8.1624 3.4449 6.6200 23 6 9.3340 2.5949 6.1218 24 6 5.8613 4.4523 -0.3907 25 6 6.9744 3.7295 -1.1711 26 6 6.0208 2.5267 -1.2643 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8340 0.9764 -0.8892 34 1 3.4298 3.4203 -0.8928 35 1 3.4154 3.4235 0.8871 36 1 5.6344 1.5074 1.4803 37 1 7.0644 2.5315 1.2071 38 1 5.1999 4.2538 2.2606 39 1 7.9701 1.9462 3.4964 40 1 8.0542 3.6664 3.9462 41 1 9.2747 -1.1370 4.9989 42 1 8.0909 4.4684 6.2518 43 1 7.8285 3.2896 7.6458 44 1 9.7702 1.8807 6.8202 45 1 10.0330 3.0587 5.4258 46 1 5.1692 5.0035 -1.0272 47 1 6.2282 5.0432 0.4486 48 1 7.8667 3.5342 -0.5762 49 1 7.2000 4.1837 -2.1359 50 1 6.5162 1.5652 -1.1291 51 1 5.3718 2.5492 -2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451328810.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:45 Heat of formation + Delta-G solvation = -91.978902 kcal Electronic energy + Delta-G solvation = -30045.013978 eV Core-core repulsion = 26072.641373 eV Total energy + Delta-G solvation = -3972.372606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.11618 -37.86024 -36.72675 -36.18815 -35.02642 -34.21270 -32.41628 -32.02527 -30.31695 -28.19294 -26.50796 -25.97929 -25.43632 -24.08219 -22.83321 -21.58304 -21.17683 -19.71624 -18.69617 -18.48750 -16.98539 -16.71775 -16.47909 -16.25090 -16.00738 -15.22559 -15.03289 -14.78670 -14.62390 -14.54367 -14.17247 -14.08193 -13.72654 -13.17912 -13.03485 -12.90292 -12.56114 -12.55134 -12.26999 -12.06705 -11.87877 -11.80410 -11.50121 -11.29422 -11.20471 -11.10463 -11.05723 -11.01151 -10.98864 -10.86716 -10.61941 -10.53184 -10.42675 -10.23000 -10.20706 -10.07605 -9.66854 -9.57094 -9.14770 -9.02172 -8.50895 -8.07413 -6.13645 -4.26169 1.12276 3.34397 3.35724 3.46121 3.47958 3.61174 4.37746 4.40274 4.43128 4.47849 4.62591 4.70554 4.93816 4.96073 5.03038 5.07553 5.15361 5.17315 5.24639 5.26771 5.33132 5.40012 5.45925 5.52312 5.54965 5.56051 5.61325 5.74931 5.76613 5.78866 5.82297 5.84200 5.94909 5.95893 5.97665 6.05525 6.19551 6.26408 6.29520 6.33456 6.36959 6.62209 6.72404 6.99056 7.19283 7.20698 7.31959 7.44954 7.79575 8.19427 8.79994 9.47470 10.93824 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.003993 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.192867 B = 7009.931711 C = 8458.535131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.392 6.392 4 C 0.058 3.942 5 C -0.100 4.100 6 C -0.086 4.086 7 C 0.138 3.862 8 N -1.131 6.131 9 S 2.613 3.387 10 O -0.976 6.976 11 O -0.945 6.945 12 C -0.557 4.557 13 C 0.042 3.958 14 C -0.520 4.520 15 H 0.067 0.933 16 C 0.087 3.913 17 N -0.875 5.875 18 Si 0.887 3.113 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.131 4.131 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.409 0.591 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.263 0.737 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 5.361 -15.725 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.312 6.312 4 C -0.018 4.018 5 C -0.137 4.137 6 C -0.087 4.087 7 C 0.011 3.989 8 N -0.888 5.888 9 S 2.710 3.290 10 O -0.966 6.966 11 O -0.934 6.934 12 C -0.690 4.690 13 C 0.040 3.960 14 C -0.557 4.557 15 H 0.085 0.915 16 C -0.118 4.118 17 N -0.510 5.510 18 Si 0.714 3.286 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.245 4.245 23 C -0.175 4.175 24 C -0.168 4.168 25 C -0.179 4.179 26 C -0.169 4.169 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.242 0.758 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.693 5.003 -15.117 17.273 hybrid contribution 0.413 -0.714 -0.197 0.848 sum -6.280 4.290 -15.314 17.098 Atomic orbital electron populations 1.21737 0.93949 1.02105 1.02975 1.22450 0.95424 0.84004 1.00229 1.87832 1.21479 1.26345 1.95496 1.22571 0.80942 0.97643 1.00683 1.21404 0.93753 0.95330 1.03218 1.21961 0.94327 0.97808 0.94623 1.21040 0.98605 0.94603 0.84608 1.55968 1.79905 1.29023 1.23929 1.04939 0.78573 0.73961 0.71530 1.93500 1.78931 1.57297 1.66906 1.93536 1.74053 1.41386 1.84448 1.29976 1.23152 1.07557 1.08329 1.18246 0.98193 0.94097 0.85484 1.20507 1.08767 0.89039 1.37398 0.91505 1.24901 0.93820 0.99044 0.94048 1.69995 1.17748 1.24592 1.38673 0.86699 0.80568 0.81840 0.79505 1.19095 1.21139 1.19919 1.23170 1.06313 0.94782 1.00266 1.22505 0.91076 1.01076 1.02816 1.23012 0.98148 0.95416 1.00252 1.22867 0.97398 0.97124 1.00528 1.22977 0.98374 0.98658 0.96866 0.92118 0.91231 0.91764 0.93667 0.93025 0.92295 0.93450 0.91118 0.90607 0.89901 0.91559 0.75823 0.85466 0.88297 0.92730 0.91061 0.89632 0.89346 0.91717 0.89863 0.90858 0.89811 0.91488 0.90960 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.39 -5.32 10.34 -35.23 -0.36 -5.68 16 4 C 0.06 0.72 5.61 37.16 0.21 0.93 16 5 C -0.10 -1.12 4.95 -26.73 -0.13 -1.25 16 6 C -0.09 -0.88 0.53 -153.69 -0.08 -0.96 16 7 C 0.14 1.80 5.25 -4.04 -0.02 1.77 16 8 N -1.13 -16.64 5.42 -10.61 -0.06 -16.70 16 9 S 2.61 52.98 5.02 -107.50 -0.54 52.44 16 10 O -0.98 -21.90 18.08 -57.54 -1.04 -22.94 16 11 O -0.94 -22.62 16.69 -57.54 -0.96 -23.58 16 12 C -0.56 -11.46 6.01 37.16 0.22 -11.24 16 13 C 0.04 1.02 1.53 -155.66 -0.24 0.78 16 14 C -0.52 -14.23 7.46 -34.44 -0.26 -14.49 16 15 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 16 C 0.09 2.38 5.42 -17.82 -0.10 2.28 16 17 N -0.87 -23.92 12.71 55.43 0.70 -23.21 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.21 -4.58 9.92 -26.69 -0.26 -4.85 16 23 C -0.14 -3.10 9.24 -26.69 -0.25 -3.35 16 24 C -0.13 -1.16 6.97 -25.82 -0.18 -1.34 16 25 C -0.14 -1.18 7.74 -25.82 -0.20 -1.38 16 26 C -0.13 -1.14 6.53 -25.92 -0.17 -1.31 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 33 H 0.05 0.50 7.64 -51.93 -0.40 0.11 16 34 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 36 H 0.08 1.19 6.20 -51.93 -0.32 0.87 16 37 H 0.07 0.78 7.32 -51.93 -0.38 0.40 16 38 H 0.41 5.16 7.92 -34.47 -0.27 4.88 16 39 H 0.13 2.63 8.14 -51.92 -0.42 2.21 16 40 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 41 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 47 H 0.07 0.66 7.51 -51.93 -0.39 0.27 16 48 H 0.08 0.72 7.62 -51.93 -0.40 0.33 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 51 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 418.14 15.07 6.30 6.30 Total: -1.00 -32.86 418.14 -11.01 -43.87 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -9.21 Total: 7.47 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: -0.83 Total: -34.55 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.65 Total: -39.91 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -2.37 Total: -52.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.54 Total: 52.44 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.86 -11.01 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451328810.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.108 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds