Wall clock time and date at job start Wed Apr 1 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47072 * 2 1 4 4 C 1.42900 * 114.00152 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47392 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47138 * 179.54407 * 5 4 3 7 7 C 1.52999 * 112.85181 * 294.46482 * 6 5 4 8 8 N 1.46501 * 109.47109 * 293.50623 * 7 6 5 9 9 S 1.65595 * 119.99944 * 164.72617 * 8 7 6 10 10 O 1.42100 * 104.27699 * 181.06862 * 9 8 7 11 11 O 1.42101 * 104.27903 * 308.92682 * 9 8 7 12 12 C 1.81404 * 104.45081 * 64.99689 * 9 8 7 13 13 C 1.53005 * 109.47308 * 176.03250 * 12 9 8 14 14 C 1.50701 * 115.54557 * 54.36658 * 13 12 9 15 15 H 1.08006 * 119.99689 * 265.13123 * 14 13 12 16 16 C 1.37874 * 120.00274 * 85.12848 * 14 13 12 17 17 N 1.31515 * 119.99730 * 1.80197 * 16 14 13 18 18 Si 1.86798 * 119.99976 * 181.79909 * 16 14 13 19 19 H 1.48504 * 109.47274 * 60.00512 * 18 16 14 20 20 H 1.48502 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47068 * 300.00225 * 18 16 14 22 22 C 1.52998 * 117.50173 * 268.69590 * 13 12 9 23 23 C 1.52997 * 117.49922 * 200.03126 * 13 12 9 24 24 C 1.53783 * 113.61167 * 163.26934 * 6 5 4 25 25 C 1.53962 * 87.01788 * 220.05057 * 24 6 5 26 26 C 1.53780 * 87.11097 * 25.36401 * 25 24 6 27 27 H 1.09007 * 109.46930 * 60.00028 * 1 2 3 28 28 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47419 * 300.00227 * 1 2 3 30 30 H 1.08998 * 109.47063 * 240.00183 * 2 1 3 31 31 H 1.08998 * 109.46738 * 119.99863 * 2 1 3 32 32 H 1.09000 * 109.47181 * 300.00413 * 4 3 2 33 33 H 1.09003 * 109.46629 * 59.99760 * 4 3 2 34 34 H 1.08993 * 109.47193 * 299.54601 * 5 4 3 35 35 H 1.09005 * 109.47033 * 59.54549 * 5 4 3 36 36 H 1.08998 * 109.46924 * 53.50422 * 7 6 5 37 37 H 1.09001 * 109.47095 * 173.50206 * 7 6 5 38 38 H 0.97003 * 119.99921 * 344.72389 * 8 7 6 39 39 H 1.09001 * 109.47478 * 296.03892 * 12 9 8 40 40 H 1.09004 * 109.46778 * 56.03903 * 12 9 8 41 41 H 0.97004 * 119.99553 * 185.01463 * 17 16 14 42 42 H 1.09004 * 117.49951 * 359.97438 * 22 13 12 43 43 H 1.08994 * 117.50114 * 145.02175 * 22 13 12 44 44 H 1.09001 * 117.49768 * 214.98171 * 23 13 12 45 45 H 1.08999 * 117.50044 * 359.97438 * 23 13 12 46 46 H 1.08995 * 113.61649 * 334.56777 * 24 6 5 47 47 H 1.08997 * 113.61583 * 105.47384 * 24 6 5 48 48 H 1.09003 * 113.53443 * 270.81669 * 25 24 6 49 49 H 1.08998 * 113.74343 * 139.94630 * 25 24 6 50 50 H 1.09004 * 113.61456 * 220.09744 * 26 25 24 51 51 H 1.08991 * 113.69219 * 89.19787 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3506 3.0592 0.0133 7 6 5.9786 2.5263 1.3026 8 7 5.5832 3.3783 2.4269 9 16 5.7905 2.8470 3.9815 10 8 5.2822 3.9039 4.7838 11 8 5.1866 1.5607 3.9957 12 6 7.5887 2.7080 4.1763 13 6 7.9167 2.3150 5.6182 14 6 7.2308 1.0725 6.1252 15 1 6.3079 1.1535 6.6802 16 6 7.7815 -0.1676 5.8803 17 7 8.9234 -0.2642 5.2352 18 14 6.9056 -1.7104 6.4650 19 1 5.5616 -1.7846 5.8376 20 1 7.6985 -2.9057 6.0804 21 1 6.7606 -1.6675 7.9423 22 6 8.1624 3.4449 6.6200 23 6 9.3340 2.5949 6.1218 24 6 5.8613 4.4523 -0.3907 25 6 6.9744 3.7295 -1.1711 26 6 6.0208 2.5267 -1.2643 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8340 0.9764 -0.8892 34 1 3.4298 3.4203 -0.8928 35 1 3.4154 3.4235 0.8871 36 1 5.6344 1.5074 1.4803 37 1 7.0644 2.5315 1.2071 38 1 5.1999 4.2538 2.2606 39 1 7.9701 1.9462 3.4964 40 1 8.0542 3.6664 3.9462 41 1 9.2747 -1.1370 4.9989 42 1 8.0909 4.4684 6.2518 43 1 7.8285 3.2896 7.6458 44 1 9.7702 1.8807 6.8202 45 1 10.0330 3.0587 5.4258 46 1 5.1692 5.0035 -1.0272 47 1 6.2282 5.0432 0.4486 48 1 7.8667 3.5342 -0.5762 49 1 7.2000 4.1837 -2.1359 50 1 6.5162 1.5652 -1.1291 51 1 5.3718 2.5492 -2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451328810.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:43 Heat of formation + Delta-G solvation = -113.356763 kcal Electronic energy + Delta-G solvation = -30045.940992 eV Core-core repulsion = 26072.641373 eV Total energy + Delta-G solvation = -3973.299619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.93183 -38.81235 -38.54822 -37.91831 -36.75697 -35.37328 -34.08078 -33.28992 -31.18108 -29.88397 -27.60429 -27.42656 -26.67443 -24.97610 -23.69866 -22.95867 -22.37513 -21.52069 -20.23373 -19.49512 -18.46478 -18.19816 -17.73451 -17.29007 -17.15161 -16.81529 -16.68005 -16.19941 -15.85977 -15.58362 -15.49135 -15.21380 -14.98989 -14.87164 -14.16073 -13.87805 -13.80355 -13.70082 -13.33544 -13.23750 -13.12132 -13.07572 -12.97135 -12.91582 -12.85568 -12.79057 -12.48074 -12.42959 -12.23477 -12.16611 -11.93231 -11.89622 -11.85442 -11.53251 -11.42350 -11.01084 -10.98377 -10.95266 -10.57683 -10.49161 -10.37247 -9.85836 -8.21004 -6.36467 -0.48708 1.35937 1.38697 1.47651 2.07747 2.39467 2.68987 2.97440 3.07905 3.36798 3.49150 3.59240 3.62146 3.74248 3.98605 4.02452 4.10164 4.12762 4.22299 4.25297 4.30193 4.41087 4.43835 4.49466 4.52201 4.54777 4.59912 4.65727 4.72742 4.84407 4.87083 4.90519 4.98001 4.98415 4.99043 5.02559 5.05806 5.13604 5.19805 5.21895 5.23019 5.28929 5.42854 5.49016 5.61720 5.63009 5.69395 6.18140 6.21120 6.25040 6.69893 7.37695 8.85860 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.003993 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.192867 B = 7009.931711 C = 8458.535131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.410 6.410 4 C 0.055 3.945 5 C -0.097 4.097 6 C -0.088 4.088 7 C 0.129 3.871 8 N -1.112 6.112 9 S 2.625 3.375 10 O -1.001 7.001 11 O -0.990 6.990 12 C -0.552 4.552 13 C 0.009 3.991 14 C -0.538 4.538 15 H 0.045 0.955 16 C 0.051 3.949 17 N -0.889 5.889 18 Si 0.925 3.075 19 H -0.280 1.280 20 H -0.270 1.270 21 H -0.268 1.268 22 C -0.197 4.197 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.138 4.138 26 C -0.126 4.126 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.421 0.579 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.266 0.734 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 6.486 -17.933 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.331 6.331 4 C -0.021 4.021 5 C -0.134 4.134 6 C -0.089 4.089 7 C 0.003 3.997 8 N -0.873 5.873 9 S 2.723 3.277 10 O -0.992 6.992 11 O -0.980 6.980 12 C -0.685 4.685 13 C 0.006 3.994 14 C -0.575 4.575 15 H 0.063 0.937 16 C -0.152 4.152 17 N -0.525 5.525 18 Si 0.750 3.250 19 H -0.206 1.206 20 H -0.195 1.195 21 H -0.193 1.193 22 C -0.234 4.234 23 C -0.170 4.170 24 C -0.164 4.164 25 C -0.175 4.175 26 C -0.164 4.164 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.257 0.743 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.180 6.133 -17.309 19.376 hybrid contribution 0.223 -1.056 0.476 1.180 sum -5.957 5.077 -16.833 18.564 Atomic orbital electron populations 1.21753 0.92533 1.03392 1.02762 1.22654 0.96704 0.83243 1.00405 1.87810 1.22054 1.27653 1.95553 1.22641 0.80578 0.98578 1.00300 1.21417 0.94459 0.94366 1.03159 1.21936 0.93490 0.99580 0.93918 1.21266 0.99804 0.93504 0.85133 1.55400 1.79702 1.29739 1.22469 1.04242 0.78383 0.72736 0.72370 1.93453 1.79496 1.57571 1.68656 1.93482 1.75177 1.43734 1.85611 1.29842 1.23242 1.09405 1.05962 1.18387 0.99128 0.94136 0.87706 1.20672 1.08311 0.91001 1.37510 0.93705 1.25392 0.94504 1.00852 0.94449 1.70021 1.18138 1.25077 1.39216 0.86123 0.79262 0.80266 0.79359 1.20550 1.19474 1.19312 1.23241 1.04969 0.95630 0.99606 1.22438 0.90997 1.00869 1.02716 1.23053 0.98475 0.94385 1.00508 1.22860 0.96936 0.96604 1.01147 1.23009 0.98425 0.98830 0.96105 0.91365 0.89230 0.92880 0.91888 0.94443 0.94963 0.91508 0.89342 0.92430 0.91917 0.89958 0.74282 0.85783 0.84486 0.92505 0.88207 0.90272 0.91619 0.89380 0.88371 0.90955 0.90176 0.89966 0.91179 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 10.28 71.98 0.74 -1.94 16 2 C 0.05 1.04 6.66 71.98 0.48 1.52 16 3 O -0.41 -11.12 10.34 -148.98 -1.54 -12.66 16 4 C 0.06 1.36 5.61 71.98 0.40 1.76 16 5 C -0.10 -2.06 4.95 30.59 0.15 -1.91 16 6 C -0.09 -1.65 0.53 -51.65 -0.03 -1.68 16 7 C 0.13 3.25 5.25 86.38 0.45 3.71 16 8 N -1.11 -31.97 5.42 -187.49 -1.02 -32.98 16 9 S 2.63 106.87 5.02 -56.49 -0.28 106.58 16 10 O -1.00 -44.88 18.08 -127.65 -2.31 -47.19 16 11 O -0.99 -49.16 16.69 -127.65 -2.13 -51.29 16 12 C -0.55 -22.06 6.01 71.98 0.43 -21.63 16 13 C 0.01 0.41 1.53 -52.93 -0.08 0.33 16 14 C -0.54 -29.98 7.46 25.60 0.19 -29.79 16 15 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 16 C 0.05 2.84 5.42 84.65 0.46 3.30 16 17 N -0.89 -48.68 12.71 21.45 0.27 -48.41 16 18 Si 0.92 44.75 29.54 68.60 2.03 46.77 16 19 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 C -0.20 -8.44 9.92 30.62 0.30 -8.13 16 23 C -0.13 -5.85 9.24 30.62 0.28 -5.57 16 24 C -0.13 -1.87 6.97 31.18 0.22 -1.65 16 25 C -0.14 -1.86 7.74 31.18 0.24 -1.62 16 26 C -0.13 -1.85 6.53 31.12 0.20 -1.65 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.03 0.95 6.71 -2.39 -0.02 0.94 16 33 H 0.07 1.35 7.64 -2.39 -0.02 1.33 16 34 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 35 H 0.06 1.42 7.90 -2.38 -0.02 1.40 16 36 H 0.06 1.86 6.20 -2.39 -0.01 1.84 16 37 H 0.08 1.82 7.32 -2.39 -0.02 1.80 16 38 H 0.42 10.13 7.92 -96.74 -0.77 9.36 16 39 H 0.12 5.04 8.14 -2.39 -0.02 5.02 16 40 H 0.14 4.32 8.09 -2.39 -0.02 4.30 16 41 H 0.27 13.87 8.32 -92.71 -0.77 13.09 16 42 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 43 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 46 H 0.10 1.19 8.05 -2.39 -0.02 1.17 16 47 H 0.07 1.09 7.51 -2.39 -0.02 1.07 16 48 H 0.08 1.15 7.62 -2.39 -0.02 1.13 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.07 1.08 8.10 -2.38 -0.02 1.06 16 51 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -71.68 418.14 -0.40 -72.09 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.13 Total: 32.03 kcal Atomic # 6 Polarization: -69.39 SS G_CDS: 4.45 Total: -64.94 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -0.74 Total: -81.39 kcal Atomic # 8 Polarization: -105.16 SS G_CDS: -5.98 Total: -111.14 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 106.87 SS G_CDS: -0.28 Total: 106.58 kcal Total: -71.68 -0.40 -72.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451328810.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.272 kcal (2) G-P(sol) polarization free energy of solvation -71.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds