Wall clock time and date at job start Wed Apr 1 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46727 * 2 1 4 4 C 1.42901 * 113.99922 * 180.02562 * 3 2 1 5 5 C 1.54054 * 113.57001 * 209.99668 * 4 3 2 6 6 C 1.52310 * 86.61489 * 220.97896 * 5 4 3 7 7 C 1.52315 * 88.63085 * 24.59843 * 6 5 4 8 8 C 1.53742 * 116.25660 * 143.40124 * 6 5 4 9 9 C 1.54581 * 102.74783 * 95.00150 * 8 6 5 10 10 N 1.47127 * 107.36041 * 20.84351 * 9 8 6 11 11 S 1.65599 * 125.59130 * 180.89845 * 10 9 8 12 12 O 1.42097 * 104.27788 * 333.95535 * 11 10 9 13 13 O 1.42100 * 104.27875 * 206.09720 * 11 10 9 14 14 C 1.81399 * 104.44808 * 90.02918 * 11 10 9 15 15 C 1.52998 * 109.47108 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.47322 * 59.99946 * 15 14 11 17 17 C 1.52997 * 109.47291 * 299.99618 * 15 14 11 18 18 C 1.50706 * 109.47348 * 179.97438 * 15 14 11 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00436 * 179.72505 * 18 15 14 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47050 * 59.99579 * 22 20 18 24 24 H 1.48496 * 109.47289 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46492 * 299.99554 * 22 20 18 26 26 C 1.47706 * 108.81412 * 1.16632 * 10 9 8 27 27 H 1.08999 * 109.46936 * 299.99908 * 1 2 3 28 28 H 1.08997 * 109.47134 * 60.00139 * 1 2 3 29 29 H 1.09002 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46936 * 240.00092 * 2 1 3 31 31 H 1.08997 * 109.47134 * 119.99861 * 2 1 3 32 32 H 1.09001 * 112.81190 * 341.05048 * 4 3 2 33 33 H 1.09001 * 113.68783 * 106.54650 * 5 4 3 34 34 H 1.09002 * 113.77521 * 335.42123 * 5 4 3 35 35 H 1.09000 * 113.68721 * 89.82964 * 7 6 5 36 36 H 1.08995 * 113.69060 * 220.97149 * 7 6 5 37 37 H 1.08998 * 110.75543 * 336.68437 * 8 6 5 38 38 H 1.09001 * 110.91369 * 213.38712 * 8 6 5 39 39 H 1.09001 * 109.86776 * 261.39940 * 9 8 6 40 40 H 1.09003 * 109.87082 * 140.28935 * 9 8 6 41 41 H 1.09000 * 109.47516 * 59.99948 * 14 11 10 42 42 H 1.09002 * 109.46834 * 299.99504 * 14 11 10 43 43 H 1.09005 * 109.47120 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.46792 * 300.00022 * 16 15 14 45 45 H 1.09002 * 109.47539 * 59.99947 * 16 15 14 46 46 H 1.09001 * 109.47000 * 300.00701 * 17 15 14 47 47 H 1.09002 * 109.46917 * 59.99921 * 17 15 14 48 48 H 1.08995 * 109.47505 * 180.02562 * 17 15 14 49 49 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 50 50 H 1.09003 * 110.39509 * 96.00770 * 26 10 9 51 51 H 1.09003 * 110.39731 * 218.40748 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9486 2.7279 0.7053 6 6 4.9587 2.8378 -0.4293 7 6 4.0039 2.0400 -1.3078 8 6 5.2939 4.2605 -0.9060 9 6 6.5683 4.5992 -0.0994 10 7 7.1639 3.3260 0.3355 11 16 8.5353 3.1661 1.2498 12 8 9.2769 4.3475 0.9788 13 8 9.0428 1.8859 0.8994 14 6 7.9396 3.1675 2.9632 15 6 9.1278 3.0243 3.9164 16 6 10.0909 4.1952 3.7103 17 6 9.8554 1.7091 3.6305 18 6 8.6330 3.0261 5.3399 19 1 7.5767 3.1204 5.5442 20 6 9.5282 2.9022 6.3811 21 7 10.8140 2.7820 6.1320 22 14 8.9149 2.9037 8.1455 23 1 7.9750 1.7712 8.3438 24 1 10.0674 2.7576 9.0704 25 1 8.2145 4.1831 8.4249 26 6 6.3415 2.2139 -0.1827 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9273 0.5463 0.3253 33 1 4.4014 2.5337 1.6776 34 1 3.2261 3.5437 0.7291 35 1 3.2963 2.6586 -1.8598 36 1 4.5007 1.2994 -1.9345 37 1 4.4866 4.9504 -0.6605 38 1 5.4993 4.2739 -1.9764 39 1 6.3070 5.2021 0.7703 40 1 7.2728 5.1414 -0.7301 41 1 7.2531 2.3336 3.1100 42 1 7.4217 4.1047 3.1670 43 1 10.9376 4.0929 4.3891 44 1 10.4488 4.1943 2.6807 45 1 9.5726 5.1322 3.9140 46 1 9.1692 0.8750 3.7773 47 1 10.2133 1.7083 2.6010 48 1 10.7016 1.6069 4.3098 49 1 11.4438 2.6945 6.8645 50 1 6.7608 1.8333 -1.1141 51 1 6.2714 1.4165 0.5571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451536514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:05 Heat of formation + Delta-G solvation = -98.329275 kcal Electronic energy + Delta-G solvation = -30083.293666 eV Core-core repulsion = 26110.645687 eV Total energy + Delta-G solvation = -3972.647979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.64973 -37.84873 -36.55749 -36.28085 -35.38720 -35.16213 -31.66913 -31.30005 -30.01983 -27.59097 -26.59479 -26.07081 -25.72536 -25.23266 -23.13612 -23.00617 -21.64337 -19.45848 -18.80120 -18.51685 -17.41402 -16.91688 -16.21951 -15.98105 -15.77468 -15.61870 -15.22403 -14.91180 -14.73850 -14.38678 -13.69954 -13.57024 -13.28361 -13.21986 -12.99843 -12.95472 -12.54996 -12.50904 -12.35479 -12.24938 -12.18830 -12.08065 -11.54366 -11.51846 -11.41412 -11.29622 -11.11127 -11.05777 -10.95864 -10.89108 -10.70092 -10.53693 -10.40519 -10.37347 -10.27884 -10.10735 -9.66102 -9.64064 -9.58127 -8.91127 -8.60285 -8.40731 -6.03996 -4.16211 0.80499 3.11604 3.26348 3.31862 3.33462 3.43433 4.13264 4.17685 4.30663 4.34280 4.42426 4.51467 4.65575 4.77420 4.80212 4.87338 4.98760 5.08385 5.14216 5.20887 5.25329 5.29568 5.44666 5.53437 5.55726 5.59451 5.61348 5.64073 5.70047 5.72056 5.74712 5.78679 5.86122 5.91980 6.02197 6.09971 6.22605 6.37741 6.51696 6.69786 6.78779 6.89792 7.03350 7.04420 7.30503 7.49502 7.66896 7.97075 8.08684 8.32220 8.82054 9.49187 10.97294 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.003245 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.182949 B = 8625.695378 C =10244.285361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.375 6.375 4 C 0.061 3.939 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.137 4.137 8 C -0.110 4.110 9 C 0.121 3.879 10 N -1.021 6.021 11 S 2.607 3.393 12 O -0.959 6.959 13 O -0.960 6.960 14 C -0.581 4.581 15 C 0.083 3.917 16 C -0.163 4.163 17 C -0.164 4.164 18 C -0.503 4.503 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.146 3.854 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.027 0.973 48 H 0.096 0.904 49 H 0.263 0.737 50 H 0.072 0.928 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.683 -2.009 -14.492 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.295 6.295 4 C 0.003 3.997 5 C -0.158 4.158 6 C -0.096 4.096 7 C -0.175 4.175 8 C -0.149 4.149 9 C -0.004 4.004 10 N -0.857 5.857 11 S 2.707 3.293 12 O -0.950 6.950 13 O -0.951 6.951 14 C -0.714 4.714 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.222 4.222 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C 0.021 3.979 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.114 0.886 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.656 -1.944 -14.737 21.589 hybrid contribution -0.711 -0.211 1.497 1.671 sum -16.366 -2.155 -13.240 21.161 Atomic orbital electron populations 1.21748 0.93922 1.02169 1.03051 1.22512 0.95504 0.84128 1.00083 1.87944 1.20759 1.26164 1.94592 1.23862 0.80905 0.98240 0.96658 1.23061 0.96941 0.97807 0.97976 1.21789 0.93747 0.96296 0.97782 1.23270 0.97757 0.99503 0.96941 1.22392 0.97051 0.95330 1.00107 1.21692 0.94626 0.85471 0.98660 1.59021 1.45916 1.12322 1.68429 1.05365 0.72544 0.74173 0.77225 1.93533 1.67577 1.49382 1.84472 1.93535 1.76441 1.42170 1.82930 1.30565 1.11589 1.09639 1.19634 1.17923 0.87496 0.93328 0.93220 1.22273 1.02472 0.97604 0.99762 1.22279 1.02941 0.97372 0.99567 1.20907 0.93412 1.50864 0.89034 0.92373 1.24935 0.94903 0.94781 0.99085 1.69792 1.01245 1.49337 1.31817 0.86595 0.78275 0.78583 0.84166 1.20281 1.21165 1.20246 1.21546 0.88054 0.88789 0.99554 0.91859 0.91956 0.91229 0.93431 0.93289 0.89367 0.90265 0.88650 0.88730 0.90769 0.90009 0.90377 0.91644 0.91163 0.86571 0.86446 0.88680 0.95397 0.94454 0.94528 0.95414 0.88565 0.92670 0.90938 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.43 6.50 37.16 0.24 0.67 16 3 O -0.38 -3.80 10.36 -35.23 -0.36 -4.16 16 4 C 0.06 0.56 4.22 -25.67 -0.11 0.45 16 5 C -0.12 -1.16 7.23 -26.53 -0.19 -1.36 16 6 C -0.09 -0.90 0.93 -154.51 -0.14 -1.04 16 7 C -0.14 -1.12 7.28 -26.53 -0.19 -1.32 16 8 C -0.11 -0.99 6.34 -25.51 -0.16 -1.15 16 9 C 0.12 1.45 6.91 -2.87 -0.02 1.43 16 10 N -1.02 -14.75 3.63 -111.68 -0.41 -15.16 16 11 S 2.61 49.56 4.69 -107.50 -0.50 49.06 16 12 O -0.96 -20.53 15.22 -57.54 -0.88 -21.40 16 13 O -0.96 -20.42 15.22 -57.54 -0.88 -21.29 16 14 C -0.58 -11.47 5.12 37.16 0.19 -11.28 16 15 C 0.08 2.02 0.52 -155.66 -0.08 1.93 16 16 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 17 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 18 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.20 9.35 55.43 0.52 -23.68 16 22 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.15 1.75 6.17 -3.02 -0.02 1.73 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.08 0.62 7.99 -51.93 -0.42 0.21 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 42 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 43 H 0.09 2.54 6.09 -51.93 -0.32 2.22 16 44 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.03 0.65 5.47 -51.93 -0.28 0.37 16 48 H 0.10 2.56 6.05 -51.93 -0.31 2.25 16 49 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -31.86 400.87 -10.54 -42.40 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -9.16 Total: 2.53 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 0.11 Total: -29.99 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.11 Total: -38.84 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.12 Total: -46.86 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.50 Total: 49.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.86 -10.54 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451536514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.926 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds