Wall clock time and date at job start Wed Apr 1 2020 05:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46727 * 2 1 4 4 C 1.42901 * 113.99922 * 180.02562 * 3 2 1 5 5 C 1.54054 * 113.57001 * 209.99668 * 4 3 2 6 6 C 1.52310 * 86.61489 * 220.97896 * 5 4 3 7 7 C 1.52315 * 88.63085 * 24.59843 * 6 5 4 8 8 C 1.53742 * 116.25660 * 143.40124 * 6 5 4 9 9 C 1.54581 * 102.74783 * 95.00150 * 8 6 5 10 10 N 1.47127 * 107.36041 * 20.84351 * 9 8 6 11 11 S 1.65599 * 125.59130 * 180.89845 * 10 9 8 12 12 O 1.42097 * 104.27788 * 333.95535 * 11 10 9 13 13 O 1.42100 * 104.27875 * 206.09720 * 11 10 9 14 14 C 1.81399 * 104.44808 * 90.02918 * 11 10 9 15 15 C 1.52998 * 109.47108 * 180.02562 * 14 11 10 16 16 C 1.52998 * 109.47322 * 59.99946 * 15 14 11 17 17 C 1.52997 * 109.47291 * 299.99618 * 15 14 11 18 18 C 1.50706 * 109.47348 * 179.97438 * 15 14 11 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00436 * 179.72505 * 18 15 14 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47050 * 59.99579 * 22 20 18 24 24 H 1.48496 * 109.47289 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46492 * 299.99554 * 22 20 18 26 26 C 1.47706 * 108.81412 * 1.16632 * 10 9 8 27 27 H 1.08999 * 109.46936 * 299.99908 * 1 2 3 28 28 H 1.08997 * 109.47134 * 60.00139 * 1 2 3 29 29 H 1.09002 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46936 * 240.00092 * 2 1 3 31 31 H 1.08997 * 109.47134 * 119.99861 * 2 1 3 32 32 H 1.09001 * 112.81190 * 341.05048 * 4 3 2 33 33 H 1.09001 * 113.68783 * 106.54650 * 5 4 3 34 34 H 1.09002 * 113.77521 * 335.42123 * 5 4 3 35 35 H 1.09000 * 113.68721 * 89.82964 * 7 6 5 36 36 H 1.08995 * 113.69060 * 220.97149 * 7 6 5 37 37 H 1.08998 * 110.75543 * 336.68437 * 8 6 5 38 38 H 1.09001 * 110.91369 * 213.38712 * 8 6 5 39 39 H 1.09001 * 109.86776 * 261.39940 * 9 8 6 40 40 H 1.09003 * 109.87082 * 140.28935 * 9 8 6 41 41 H 1.09000 * 109.47516 * 59.99948 * 14 11 10 42 42 H 1.09002 * 109.46834 * 299.99504 * 14 11 10 43 43 H 1.09005 * 109.47120 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.46792 * 300.00022 * 16 15 14 45 45 H 1.09002 * 109.47539 * 59.99947 * 16 15 14 46 46 H 1.09001 * 109.47000 * 300.00701 * 17 15 14 47 47 H 1.09002 * 109.46917 * 59.99921 * 17 15 14 48 48 H 1.08995 * 109.47505 * 180.02562 * 17 15 14 49 49 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 50 50 H 1.09003 * 110.39509 * 96.00770 * 26 10 9 51 51 H 1.09003 * 110.39731 * 218.40748 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9486 2.7279 0.7053 6 6 4.9587 2.8378 -0.4293 7 6 4.0039 2.0400 -1.3078 8 6 5.2939 4.2605 -0.9060 9 6 6.5683 4.5992 -0.0994 10 7 7.1639 3.3260 0.3355 11 16 8.5353 3.1661 1.2498 12 8 9.2769 4.3475 0.9788 13 8 9.0428 1.8859 0.8994 14 6 7.9396 3.1675 2.9632 15 6 9.1278 3.0243 3.9164 16 6 10.0909 4.1952 3.7103 17 6 9.8554 1.7091 3.6305 18 6 8.6330 3.0261 5.3399 19 1 7.5767 3.1204 5.5442 20 6 9.5282 2.9022 6.3811 21 7 10.8140 2.7820 6.1320 22 14 8.9149 2.9037 8.1455 23 1 7.9750 1.7712 8.3438 24 1 10.0674 2.7576 9.0704 25 1 8.2145 4.1831 8.4249 26 6 6.3415 2.2139 -0.1827 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9273 0.5463 0.3253 33 1 4.4014 2.5337 1.6776 34 1 3.2261 3.5437 0.7291 35 1 3.2963 2.6586 -1.8598 36 1 4.5007 1.2994 -1.9345 37 1 4.4866 4.9504 -0.6605 38 1 5.4993 4.2739 -1.9764 39 1 6.3070 5.2021 0.7703 40 1 7.2728 5.1414 -0.7301 41 1 7.2531 2.3336 3.1100 42 1 7.4217 4.1047 3.1670 43 1 10.9376 4.0929 4.3891 44 1 10.4488 4.1943 2.6807 45 1 9.5726 5.1322 3.9140 46 1 9.1692 0.8750 3.7773 47 1 10.2133 1.7083 2.6010 48 1 10.7016 1.6069 4.3098 49 1 11.4438 2.6945 6.8645 50 1 6.7608 1.8333 -1.1141 51 1 6.2714 1.4165 0.5571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451536514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:03 Heat of formation + Delta-G solvation = -117.788168 kcal Electronic energy + Delta-G solvation = -30084.137467 eV Core-core repulsion = 26110.645687 eV Total energy + Delta-G solvation = -3973.491780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.41492 -38.61226 -38.16307 -38.14823 -36.93551 -36.10006 -33.65128 -31.91561 -30.89168 -28.61680 -28.17272 -27.72296 -27.26843 -26.75243 -23.95719 -23.67986 -22.42651 -21.31671 -19.91496 -19.55220 -18.79303 -17.92208 -17.64635 -17.28605 -16.94271 -16.70206 -16.54641 -16.27623 -15.99688 -15.19794 -15.02706 -14.81494 -14.58618 -14.45100 -14.35587 -14.00578 -13.84821 -13.83430 -13.34804 -13.23059 -13.10872 -13.01045 -12.96593 -12.88367 -12.87621 -12.82483 -12.55380 -12.47051 -12.21621 -12.16473 -12.14086 -11.99014 -11.92549 -11.69503 -11.59717 -11.39581 -11.23734 -11.08214 -10.67395 -10.43041 -10.30010 -9.89570 -8.04658 -6.23762 -0.69450 1.44308 1.44455 1.51960 1.78475 2.42901 2.80095 2.87187 3.08334 3.17994 3.37998 3.57451 3.60571 3.83496 3.95108 4.01051 4.12372 4.17868 4.24195 4.32403 4.34689 4.45920 4.53708 4.55837 4.57092 4.75820 4.80081 4.82164 4.83357 4.87835 4.91546 4.93393 4.95803 5.01597 5.04306 5.05449 5.07327 5.11277 5.24613 5.28142 5.34975 5.36007 5.39427 5.45130 5.52858 5.62247 5.94453 6.08812 6.31888 6.40225 6.80573 7.44629 8.95108 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.003245 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.182949 B = 8625.695378 C =10244.285361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.057 3.943 5 C -0.124 4.124 6 C -0.088 4.088 7 C -0.124 4.124 8 C -0.101 4.101 9 C 0.107 3.893 10 N -1.017 6.017 11 S 2.626 3.374 12 O -0.987 6.987 13 O -0.986 6.986 14 C -0.584 4.584 15 C 0.071 3.929 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.018 3.982 21 N -0.908 5.908 22 Si 0.955 3.045 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.134 3.866 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.031 0.969 48 H 0.072 0.928 49 H 0.262 0.738 50 H 0.080 0.920 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.089 -1.997 -15.422 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.312 6.312 4 C -0.001 4.001 5 C -0.162 4.162 6 C -0.090 4.090 7 C -0.162 4.162 8 C -0.139 4.139 9 C -0.017 4.017 10 N -0.856 5.856 11 S 2.726 3.274 12 O -0.977 6.977 13 O -0.977 6.977 14 C -0.716 4.716 15 C 0.069 3.931 16 C -0.217 4.217 17 C -0.218 4.218 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.181 4.181 21 N -0.546 5.546 22 Si 0.780 3.220 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.197 1.197 26 C 0.009 3.991 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.064 -1.934 -15.659 23.984 hybrid contribution 0.000 -0.225 1.733 1.748 sum -18.064 -2.159 -13.925 22.911 Atomic orbital electron populations 1.21761 0.93124 1.03167 1.02650 1.22678 0.96240 0.83394 1.00587 1.87918 1.21145 1.27413 1.94716 1.23933 0.80768 0.98195 0.97228 1.23100 0.97095 0.98407 0.97559 1.21682 0.92429 0.96573 0.98280 1.23215 0.97129 0.99376 0.96508 1.22420 0.95884 0.95194 1.00417 1.22014 0.95880 0.84368 0.99464 1.58613 1.45288 1.14383 1.67292 1.04427 0.73062 0.72999 0.76950 1.93489 1.69250 1.50255 1.84722 1.93492 1.77762 1.43281 1.83155 1.30494 1.10153 1.11265 1.19729 1.17908 0.88915 0.92484 0.93835 1.22205 1.01970 0.98217 0.99333 1.22208 1.02289 0.98120 0.99146 1.21261 0.93674 1.50672 0.90273 0.91965 1.25679 0.95071 0.94613 1.02749 1.69935 1.02144 1.49922 1.32644 0.85666 0.77731 0.78765 0.79797 1.19668 1.21225 1.19679 1.21841 0.89141 0.88278 0.99794 0.92571 0.92001 0.89576 0.92452 0.93255 0.89097 0.91332 0.88176 0.87880 0.89751 0.88027 0.88937 0.90978 0.91475 0.84919 0.84874 0.91009 0.95001 0.94125 0.94146 0.95004 0.90897 0.92853 0.90218 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.67 6.50 71.98 0.47 1.14 16 3 O -0.39 -7.20 10.36 -148.98 -1.54 -8.74 16 4 C 0.06 0.92 4.22 31.28 0.13 1.05 16 5 C -0.12 -2.14 7.23 30.72 0.22 -1.92 16 6 C -0.09 -1.44 0.93 -52.18 -0.05 -1.49 16 7 C -0.12 -1.67 7.28 30.73 0.22 -1.45 16 8 C -0.10 -1.50 6.34 31.38 0.20 -1.30 16 9 C 0.11 2.35 6.91 86.80 0.60 2.95 16 10 N -1.02 -27.89 3.63 -507.25 -1.84 -29.73 16 11 S 2.63 98.41 4.69 -56.49 -0.26 98.14 16 12 O -0.99 -42.05 15.22 -127.65 -1.94 -43.99 16 13 O -0.99 -41.71 15.22 -127.65 -1.94 -43.66 16 14 C -0.58 -22.60 5.12 71.98 0.37 -22.23 16 15 C 0.07 3.45 0.52 -52.93 -0.03 3.43 16 16 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 17 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 18 C -0.52 -27.29 8.01 25.60 0.21 -27.09 16 19 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 20 C 0.02 0.98 5.15 84.65 0.44 1.42 16 21 N -0.91 -50.57 9.35 21.45 0.20 -50.37 16 22 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.13 2.95 6.17 86.38 0.53 3.49 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 1.39 7.87 -2.39 -0.02 1.37 16 33 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 34 H 0.10 1.63 8.05 -2.39 -0.02 1.61 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.10 1.16 7.99 -2.39 -0.02 1.14 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 42 H 0.13 4.65 8.14 -2.39 -0.02 4.63 16 43 H 0.07 3.93 6.09 -2.38 -0.01 3.92 16 44 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 45 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.03 1.53 5.47 -2.39 -0.01 1.51 16 48 H 0.07 3.99 6.05 -2.39 -0.01 3.98 16 49 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 50 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 Total: -1.00 -67.98 400.87 0.75 -67.23 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.89 Total: 24.84 kcal Atomic # 6 Polarization: -63.14 SS G_CDS: 5.17 Total: -57.97 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.64 Total: -80.10 kcal Atomic # 8 Polarization: -90.96 SS G_CDS: -5.43 Total: -96.39 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 98.41 SS G_CDS: -0.26 Total: 98.14 kcal Total: -67.98 0.75 -67.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451536514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.559 kcal (2) G-P(sol) polarization free energy of solvation -67.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds