Wall clock time and date at job start Wed Apr 1 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47083 * 2 1 4 4 C 1.46901 * 110.99637 * 74.16269 * 3 2 1 5 5 C 1.53007 * 109.47152 * 189.99555 * 4 3 2 6 6 N 1.46493 * 109.47397 * 179.97438 * 5 4 3 7 7 C 1.34769 * 120.00272 * 180.02562 * 6 5 4 8 8 O 1.21359 * 120.00196 * 0.02562 * 7 6 5 9 9 C 1.49361 * 120.00253 * 180.02562 * 7 6 5 10 10 O 1.21372 * 119.99608 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00119 * 180.02562 * 9 7 6 12 12 C 1.39741 * 119.99884 * 174.87870 * 11 9 7 13 13 C 1.39340 * 119.95021 * 145.97912 * 12 11 9 14 14 C 1.38477 * 120.42141 * 180.02562 * 13 12 11 15 15 C 1.37691 * 120.32617 * 359.96202 * 14 13 12 16 16 C 1.40749 * 119.90069 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.20859 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99910 * 209.51723 * 17 16 15 19 19 C 1.39933 * 120.00138 * 29.51394 * 17 16 15 20 20 N 1.30830 * 119.99678 * 9.91563 * 19 17 16 21 21 Si 1.86798 * 120.00102 * 189.91163 * 19 17 16 22 22 H 1.48506 * 109.46717 * 94.99243 * 21 19 17 23 23 H 1.48496 * 109.47522 * 214.99382 * 21 19 17 24 24 H 1.48499 * 109.47275 * 334.99757 * 21 19 17 25 25 C 1.38301 * 119.95196 * 325.70340 * 12 11 9 26 26 C 1.46905 * 111.00195 * 198.11632 * 3 2 1 27 27 C 1.52993 * 117.50029 * 134.39040 * 26 3 2 28 28 C 1.52998 * 117.49505 * 65.72773 * 26 3 2 29 29 H 1.09007 * 109.47329 * 54.52115 * 1 2 3 30 30 H 1.09000 * 109.47207 * 174.52004 * 1 2 3 31 31 H 1.08994 * 109.47339 * 294.51983 * 1 2 3 32 32 H 1.08997 * 109.46916 * 120.00176 * 2 1 3 33 33 H 1.09002 * 109.46991 * 240.00159 * 2 1 3 34 34 H 1.08995 * 109.47190 * 309.99856 * 4 3 2 35 35 H 1.09002 * 109.46971 * 70.00287 * 4 3 2 36 36 H 1.08998 * 109.47170 * 300.00733 * 5 4 3 37 37 H 1.09007 * 109.46391 * 60.00066 * 5 4 3 38 38 H 0.97011 * 119.99848 * 0.02562 * 6 5 4 39 39 H 0.97000 * 119.99871 * 354.87819 * 11 9 7 40 40 H 1.08000 * 119.79002 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.83421 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.05121 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99755 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.16557 * 359.97438 * 25 12 11 45 45 H 1.09002 * 115.54773 * 280.06110 * 26 3 2 46 46 H 1.09008 * 117.49823 * 0.02562 * 27 26 3 47 47 H 1.08999 * 117.50140 * 145.02257 * 27 26 3 48 48 H 1.08999 * 117.49586 * 214.97687 * 28 26 3 49 49 H 1.08996 * 117.50451 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8422 2.0060 1.3194 5 6 2.1266 3.5061 1.2195 6 7 1.9490 4.1255 2.5351 7 6 2.1470 5.4497 2.6887 8 8 2.4718 6.1291 1.7370 9 6 1.9665 6.0812 4.0301 10 8 1.6421 5.4016 4.9820 11 7 2.1640 7.4056 4.1836 12 6 1.8921 8.0148 5.4115 13 6 2.6732 9.0840 5.8456 14 6 2.4128 9.6946 7.0609 15 6 1.3778 9.2519 7.8537 16 6 0.5800 8.1731 7.4284 17 6 -0.4842 7.7128 8.2378 18 1 -0.7815 6.6751 8.2002 19 6 -1.1523 8.6016 9.0874 20 7 -0.9286 9.8874 8.9954 21 14 -2.3634 7.9524 10.3527 22 1 -1.6729 7.7810 11.6563 23 1 -3.4818 8.9168 10.5079 24 1 -2.8981 6.6431 9.8999 25 6 0.8447 7.5594 6.1914 26 6 3.4240 1.4469 -0.4265 27 6 3.8057 2.5205 -1.4474 28 6 3.7422 1.0505 -1.8695 29 1 -0.3634 0.5965 -0.8369 30 1 -0.3633 -1.0230 -0.0981 31 1 -0.3634 0.4265 0.9349 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 0.8178 1.8521 1.6586 35 1 2.5325 1.5520 2.0304 36 1 3.1509 3.6599 0.8802 37 1 1.4363 3.9600 0.5083 38 1 1.6890 3.5825 3.2957 39 1 2.4947 7.9358 3.4417 40 1 3.4868 9.4387 5.2303 41 1 3.0244 10.5223 7.3882 42 1 1.1789 9.7311 8.8010 43 1 -1.3920 10.5036 9.5841 44 1 0.2356 6.7340 5.8537 45 1 4.1590 1.1956 0.3383 46 1 3.0147 3.1813 -1.8024 47 1 4.7919 2.9753 -1.3547 48 1 4.6867 0.5389 -2.0543 49 1 2.9096 0.7434 -2.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453651765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:37 Heat of formation + Delta-G solvation = -15.658018 kcal Electronic energy + Delta-G solvation = -28962.237714 eV Core-core repulsion = 24890.023430 eV Total energy + Delta-G solvation = -4072.214284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.59132 -39.30652 -38.59527 -37.13228 -35.76998 -34.90487 -34.30788 -33.01574 -31.20404 -29.86112 -28.75096 -28.13210 -25.36951 -24.81172 -23.09809 -22.84225 -22.29106 -21.25471 -20.88639 -20.59460 -19.70482 -18.44656 -17.53054 -16.71431 -16.64503 -16.20393 -15.77417 -15.53732 -15.42585 -14.97644 -14.89312 -14.65964 -14.40750 -14.32867 -13.73687 -13.56239 -13.30587 -13.02145 -12.90310 -12.75149 -12.23210 -12.18753 -12.04378 -11.82658 -11.79656 -11.72926 -11.48349 -11.23667 -11.20197 -11.15863 -10.93939 -10.75503 -10.51954 -10.46743 -10.12720 -9.65981 -9.47506 -9.33297 -9.16036 -9.01388 -8.83726 -7.46605 -6.99712 -6.68286 -4.38369 1.53077 2.41264 2.75304 2.90992 3.09524 3.13821 3.18819 3.29885 3.40154 3.56151 3.93381 3.97736 4.41978 4.53472 4.57553 4.62824 4.65725 4.71102 4.74205 4.80503 4.99717 5.10491 5.15544 5.25253 5.30731 5.41717 5.56380 5.60082 5.63604 5.64882 5.68766 5.83489 5.87976 6.08984 6.19553 6.33452 6.55175 6.58916 6.66948 6.81924 6.96525 7.01788 7.09452 7.24255 7.43107 7.64180 7.79685 7.89044 8.05135 8.07236 8.16570 8.45064 8.64472 8.90879 8.93728 10.24992 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.001971 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.723516 B =14201.955262 C =15725.814069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 N -0.507 5.507 4 C 0.045 3.955 5 C 0.123 3.877 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.522 6.522 9 C 0.497 3.503 10 O -0.500 6.500 11 N -0.633 5.633 12 C 0.141 3.859 13 C -0.249 4.249 14 C -0.095 4.095 15 C -0.160 4.160 16 C 0.118 3.882 17 C -0.459 4.459 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.803 5.803 21 Si 0.912 3.088 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.204 4.204 26 C -0.003 4.003 27 C -0.161 4.161 28 C -0.170 4.170 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.279 0.721 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -16.054 -16.782 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.232 5.232 4 C -0.083 4.083 5 C 0.000 4.000 6 N -0.359 5.359 7 C 0.294 3.706 8 O -0.397 6.397 9 C 0.277 3.723 10 O -0.374 6.374 11 N -0.278 5.278 12 C 0.049 3.951 13 C -0.270 4.270 14 C -0.114 4.114 15 C -0.180 4.180 16 C 0.115 3.885 17 C -0.489 4.489 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.429 5.429 21 Si 0.737 3.263 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.225 4.225 26 C -0.112 4.112 27 C -0.199 4.199 28 C -0.208 4.208 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.247 0.753 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.481 -15.606 -17.062 23.764 hybrid contribution -0.043 -0.603 1.093 1.249 sum 5.438 -16.209 -15.970 23.395 Atomic orbital electron populations 1.21811 0.94567 1.01727 1.02664 1.22065 0.96156 0.87940 1.01210 1.61683 1.16870 1.18013 1.26657 1.22277 1.02421 0.93701 0.89913 1.21340 1.02857 0.91852 0.83993 1.45639 1.69225 1.08179 1.12825 1.20260 0.78113 0.82863 0.89368 1.90745 1.45483 1.62217 1.41295 1.19947 0.80242 0.83537 0.88555 1.90811 1.44448 1.61895 1.40269 1.43127 1.62976 1.07315 1.14356 1.17456 0.96525 0.95724 0.85351 1.20109 1.03707 1.03087 1.00117 1.20505 0.97971 0.98608 0.94292 1.21443 0.95271 1.00650 1.00606 1.17504 0.90941 0.90455 0.89601 1.19567 1.13625 0.96716 1.18987 0.90380 1.25889 0.97268 0.94462 0.96765 1.69791 1.37087 1.02614 1.33454 0.86230 0.79649 0.79739 0.80672 1.19435 1.20312 1.18626 1.21038 0.99488 1.05628 0.96335 1.22474 0.89666 1.06348 0.92699 1.23111 1.02822 0.91948 1.01977 1.23039 1.02870 0.98677 0.96183 0.91677 0.92173 0.92615 0.94509 0.90481 0.89462 0.93722 0.90719 0.90205 0.75109 0.75343 0.88911 0.88741 0.85992 0.91000 0.87509 0.89399 0.87887 0.88629 0.88724 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C 0.05 0.34 5.66 -3.83 -0.02 0.32 16 3 N -0.51 -3.82 4.57 -226.65 -1.04 -4.86 16 4 C 0.05 0.35 4.91 -3.82 -0.02 0.34 16 5 C 0.12 1.22 5.56 -4.04 -0.02 1.20 16 6 N -0.70 -8.38 5.55 -60.76 -0.34 -8.71 16 7 C 0.51 7.83 7.89 -11.63 -0.09 7.74 16 8 O -0.52 -8.70 16.48 5.49 0.09 -8.61 16 9 C 0.50 9.05 7.61 -11.63 -0.09 8.96 16 10 O -0.50 -10.35 14.21 5.48 0.08 -10.27 16 11 N -0.63 -11.95 5.32 -10.34 -0.06 -12.00 16 12 C 0.14 3.19 6.25 -83.82 -0.52 2.67 16 13 C -0.25 -5.47 9.97 -39.08 -0.39 -5.86 16 14 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 15 C -0.16 -4.14 8.65 -38.83 -0.34 -4.48 16 16 C 0.12 3.20 5.54 -106.85 -0.59 2.61 16 17 C -0.46 -12.40 9.06 -37.74 -0.34 -12.74 16 18 H 0.08 2.07 7.87 -52.48 -0.41 1.66 16 19 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 20 N -0.80 -20.82 10.85 55.55 0.60 -20.22 16 21 Si 0.91 18.99 29.57 -169.99 -5.03 13.97 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.20 -5.19 8.39 -38.67 -0.32 -5.51 16 26 C 0.00 -0.02 4.21 -67.71 -0.28 -0.31 16 27 C -0.16 -1.14 9.64 -26.70 -0.26 -1.40 16 28 C -0.17 -1.04 9.65 -26.69 -0.26 -1.30 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.36 6.90 -51.93 -0.36 0.00 16 32 H 0.04 0.23 8.02 -51.93 -0.42 -0.18 16 33 H 0.08 0.45 7.11 -51.93 -0.37 0.08 16 34 H 0.09 0.65 6.63 -51.93 -0.34 0.31 16 35 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 36 H 0.07 0.78 6.80 -51.93 -0.35 0.42 16 37 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.41 4.49 7.94 -40.82 -0.32 4.17 16 39 H 0.41 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.24 6.24 -52.48 -0.33 2.92 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.11 2.76 6.47 -52.49 -0.34 2.42 16 45 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 46 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.61 7.94 -51.93 -0.41 0.19 16 LS Contribution 405.77 15.07 6.11 6.11 Total: -1.00 -29.94 405.77 -10.60 -40.54 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.36 Total: 13.20 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.67 Total: -9.15 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.83 Total: -45.80 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.17 Total: -18.88 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.94 -10.60 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453651765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.879 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds