Wall clock time and date at job start Wed Apr 1 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47083 * 2 1 4 4 C 1.46901 * 110.99637 * 74.16269 * 3 2 1 5 5 C 1.53007 * 109.47152 * 189.99555 * 4 3 2 6 6 N 1.46493 * 109.47397 * 179.97438 * 5 4 3 7 7 C 1.34769 * 120.00272 * 180.02562 * 6 5 4 8 8 O 1.21359 * 120.00196 * 0.02562 * 7 6 5 9 9 C 1.49361 * 120.00253 * 180.02562 * 7 6 5 10 10 O 1.21372 * 119.99608 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00119 * 180.02562 * 9 7 6 12 12 C 1.39741 * 119.99884 * 174.87870 * 11 9 7 13 13 C 1.39340 * 119.95021 * 145.97912 * 12 11 9 14 14 C 1.38477 * 120.42141 * 180.02562 * 13 12 11 15 15 C 1.37691 * 120.32617 * 359.96202 * 14 13 12 16 16 C 1.40749 * 119.90069 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.20859 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99910 * 209.51723 * 17 16 15 19 19 C 1.39933 * 120.00138 * 29.51394 * 17 16 15 20 20 N 1.30830 * 119.99678 * 9.91563 * 19 17 16 21 21 Si 1.86798 * 120.00102 * 189.91163 * 19 17 16 22 22 H 1.48506 * 109.46717 * 94.99243 * 21 19 17 23 23 H 1.48496 * 109.47522 * 214.99382 * 21 19 17 24 24 H 1.48499 * 109.47275 * 334.99757 * 21 19 17 25 25 C 1.38301 * 119.95196 * 325.70340 * 12 11 9 26 26 C 1.46905 * 111.00195 * 198.11632 * 3 2 1 27 27 C 1.52993 * 117.50029 * 134.39040 * 26 3 2 28 28 C 1.52998 * 117.49505 * 65.72773 * 26 3 2 29 29 H 1.09007 * 109.47329 * 54.52115 * 1 2 3 30 30 H 1.09000 * 109.47207 * 174.52004 * 1 2 3 31 31 H 1.08994 * 109.47339 * 294.51983 * 1 2 3 32 32 H 1.08997 * 109.46916 * 120.00176 * 2 1 3 33 33 H 1.09002 * 109.46991 * 240.00159 * 2 1 3 34 34 H 1.08995 * 109.47190 * 309.99856 * 4 3 2 35 35 H 1.09002 * 109.46971 * 70.00287 * 4 3 2 36 36 H 1.08998 * 109.47170 * 300.00733 * 5 4 3 37 37 H 1.09007 * 109.46391 * 60.00066 * 5 4 3 38 38 H 0.97011 * 119.99848 * 0.02562 * 6 5 4 39 39 H 0.97000 * 119.99871 * 354.87819 * 11 9 7 40 40 H 1.08000 * 119.79002 * 0.02562 * 13 12 11 41 41 H 1.07997 * 119.83421 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.05121 * 179.97438 * 15 14 13 43 43 H 0.97001 * 119.99755 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.16557 * 359.97438 * 25 12 11 45 45 H 1.09002 * 115.54773 * 280.06110 * 26 3 2 46 46 H 1.09008 * 117.49823 * 0.02562 * 27 26 3 47 47 H 1.08999 * 117.50140 * 145.02257 * 27 26 3 48 48 H 1.08999 * 117.49586 * 214.97687 * 28 26 3 49 49 H 1.08996 * 117.50451 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8422 2.0060 1.3194 5 6 2.1266 3.5061 1.2195 6 7 1.9490 4.1255 2.5351 7 6 2.1470 5.4497 2.6887 8 8 2.4718 6.1291 1.7370 9 6 1.9665 6.0812 4.0301 10 8 1.6421 5.4016 4.9820 11 7 2.1640 7.4056 4.1836 12 6 1.8921 8.0148 5.4115 13 6 2.6732 9.0840 5.8456 14 6 2.4128 9.6946 7.0609 15 6 1.3778 9.2519 7.8537 16 6 0.5800 8.1731 7.4284 17 6 -0.4842 7.7128 8.2378 18 1 -0.7815 6.6751 8.2002 19 6 -1.1523 8.6016 9.0874 20 7 -0.9286 9.8874 8.9954 21 14 -2.3634 7.9524 10.3527 22 1 -1.6729 7.7810 11.6563 23 1 -3.4818 8.9168 10.5079 24 1 -2.8981 6.6431 9.8999 25 6 0.8447 7.5594 6.1914 26 6 3.4240 1.4469 -0.4265 27 6 3.8057 2.5205 -1.4474 28 6 3.7422 1.0505 -1.8695 29 1 -0.3634 0.5965 -0.8369 30 1 -0.3633 -1.0230 -0.0981 31 1 -0.3634 0.4265 0.9349 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 0.8178 1.8521 1.6586 35 1 2.5325 1.5520 2.0304 36 1 3.1509 3.6599 0.8802 37 1 1.4363 3.9600 0.5083 38 1 1.6890 3.5825 3.2957 39 1 2.4947 7.9358 3.4417 40 1 3.4868 9.4387 5.2303 41 1 3.0244 10.5223 7.3882 42 1 1.1789 9.7311 8.8010 43 1 -1.3920 10.5036 9.5841 44 1 0.2356 6.7340 5.8537 45 1 4.1590 1.1956 0.3383 46 1 3.0147 3.1813 -1.8024 47 1 4.7919 2.9753 -1.3547 48 1 4.6867 0.5389 -2.0543 49 1 2.9096 0.7434 -2.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453651765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:35 Heat of formation + Delta-G solvation = -35.044677 kcal Electronic energy + Delta-G solvation = -28963.078383 eV Core-core repulsion = 24890.023430 eV Total energy + Delta-G solvation = -4073.054953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.99605 -40.34467 -39.63262 -38.86343 -36.80578 -36.16189 -35.39268 -34.78338 -31.92010 -31.77055 -30.34151 -29.07877 -27.29115 -26.06477 -23.89655 -23.59746 -22.94674 -22.81371 -22.50553 -21.47280 -20.95352 -19.92857 -19.20891 -17.95858 -17.48190 -17.35799 -17.06299 -16.89784 -16.52080 -16.49793 -16.40412 -15.71471 -15.41341 -15.36792 -14.97120 -14.78723 -14.60676 -14.47242 -14.00617 -13.84041 -13.57675 -13.38363 -13.07439 -13.01465 -12.86780 -12.79915 -12.73724 -12.63553 -12.45471 -12.34058 -12.18581 -11.92106 -11.72631 -11.50693 -11.30285 -11.23043 -11.05724 -10.94187 -10.64649 -10.37345 -9.40303 -9.39356 -8.83789 -8.57366 -6.39586 0.11404 0.93967 1.02271 1.24995 1.38320 1.49928 1.52434 2.09865 2.22319 2.45133 2.75658 2.84085 2.92195 3.36158 3.69197 3.72026 3.93987 4.04268 4.07647 4.19347 4.24551 4.41507 4.43392 4.46683 4.57506 4.66493 4.69368 4.78232 4.82699 4.87613 4.89516 4.96218 5.06296 5.07487 5.08261 5.10030 5.11540 5.12307 5.30287 5.32162 5.38390 5.58596 5.76637 5.93152 5.99063 6.03645 6.09205 6.11564 6.27932 6.36234 6.64121 6.71104 6.88258 6.96132 7.00482 8.37571 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.001971 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.723516 B =14201.955262 C =15725.814069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.515 5.515 4 C 0.051 3.949 5 C 0.128 3.872 6 N -0.686 5.686 7 C 0.523 3.477 8 O -0.535 6.535 9 C 0.496 3.504 10 O -0.527 6.527 11 N -0.629 5.629 12 C 0.146 3.854 13 C -0.240 4.240 14 C -0.092 4.092 15 C -0.184 4.184 16 C 0.088 3.912 17 C -0.498 4.498 18 H 0.067 0.933 19 C 0.033 3.967 20 N -0.830 5.830 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.226 4.226 26 C -0.011 4.011 27 C -0.169 4.169 28 C -0.157 4.157 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.419 0.581 39 H 0.425 0.575 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.288 0.712 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -16.875 -17.704 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 N -0.240 5.240 4 C -0.077 4.077 5 C 0.005 3.995 6 N -0.340 5.340 7 C 0.303 3.697 8 O -0.412 6.412 9 C 0.278 3.722 10 O -0.402 6.402 11 N -0.275 5.275 12 C 0.054 3.946 13 C -0.261 4.261 14 C -0.111 4.111 15 C -0.204 4.204 16 C 0.085 3.915 17 C -0.529 4.529 18 H 0.085 0.915 19 C -0.181 4.181 20 N -0.457 5.457 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.187 1.187 25 C -0.248 4.248 26 C -0.119 4.119 27 C -0.207 4.207 28 C -0.195 4.195 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.256 0.744 39 H 0.263 0.737 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.241 -16.450 -18.026 25.189 hybrid contribution -0.178 -0.378 1.240 1.308 sum 6.063 -16.828 -16.786 24.530 Atomic orbital electron populations 1.21792 0.94428 1.02275 1.02017 1.22101 0.96213 0.87279 1.01684 1.61675 1.17266 1.18778 1.26250 1.22198 1.02889 0.92119 0.90508 1.21419 1.02613 0.93068 0.82401 1.45623 1.67388 1.06987 1.13997 1.19628 0.78719 0.83771 0.87628 1.90749 1.46717 1.62724 1.41021 1.20514 0.78945 0.83183 0.89538 1.90804 1.45320 1.62478 1.41637 1.43038 1.63067 1.07831 1.13564 1.17522 0.95398 0.95560 0.86153 1.20526 1.03814 1.01913 0.99845 1.20861 0.97074 0.98994 0.94166 1.21410 0.96805 1.01218 1.00973 1.17842 0.91664 0.91523 0.90480 1.19738 1.15127 0.96736 1.21260 0.91485 1.26704 0.98758 0.94476 0.98116 1.69836 1.38049 1.03580 1.34242 0.85153 0.77377 0.79039 0.77878 1.18489 1.18980 1.18745 1.21012 1.00955 1.05946 0.96873 1.22532 0.89476 1.06682 0.93259 1.23101 1.02662 0.92409 1.02524 1.23078 1.03451 0.97734 0.95203 0.92482 0.91020 0.93094 0.94215 0.89780 0.89000 0.93049 0.90743 0.90909 0.74351 0.73666 0.85052 0.85593 0.87437 0.90166 0.88982 0.89274 0.89045 0.88247 0.87386 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C 0.05 0.60 5.66 86.30 0.49 1.09 16 3 N -0.51 -7.03 4.57 -870.99 -3.98 -11.01 16 4 C 0.05 0.73 4.91 86.31 0.42 1.15 16 5 C 0.13 2.38 5.56 86.38 0.48 2.86 16 6 N -0.69 -15.58 5.55 -464.51 -2.58 -18.16 16 7 C 0.52 15.44 7.89 87.24 0.69 16.13 16 8 O -0.53 -17.13 16.48 -3.27 -0.05 -17.19 16 9 C 0.50 17.90 7.61 87.24 0.66 18.56 16 10 O -0.53 -22.06 14.21 -3.32 -0.05 -22.11 16 11 N -0.63 -23.16 5.32 -304.98 -1.62 -24.78 16 12 C 0.15 6.58 6.25 38.16 0.24 6.81 16 13 C -0.24 -10.08 9.97 22.59 0.23 -9.85 16 14 C -0.09 -4.15 10.02 22.20 0.22 -3.93 16 15 C -0.18 -9.74 8.65 22.75 0.20 -9.54 16 16 C 0.09 4.93 5.54 -21.31 -0.12 4.81 16 17 C -0.50 -28.17 9.06 23.46 0.21 -27.95 16 18 H 0.07 3.76 7.87 -2.91 -0.02 3.74 16 19 C 0.03 1.72 5.26 85.25 0.45 2.16 16 20 N -0.83 -43.97 10.85 21.82 0.24 -43.73 16 21 Si 0.98 39.50 29.57 68.60 2.03 41.53 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 C -0.23 -11.90 8.39 22.86 0.19 -11.70 16 26 C -0.01 -0.14 4.21 44.91 0.19 0.05 16 27 C -0.17 -2.22 9.64 30.62 0.30 -1.93 16 28 C -0.16 -1.64 9.65 30.62 0.30 -1.35 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.60 6.90 -2.39 -0.02 0.58 16 32 H 0.04 0.43 8.02 -2.39 -0.02 0.41 16 33 H 0.08 0.83 7.11 -2.39 -0.02 0.81 16 34 H 0.09 1.24 6.63 -2.39 -0.02 1.23 16 35 H 0.05 0.68 8.11 -2.39 -0.02 0.66 16 36 H 0.07 1.45 6.80 -2.39 -0.02 1.43 16 37 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.42 8.70 7.94 -92.70 -0.74 7.96 16 39 H 0.42 13.17 8.30 -92.71 -0.77 12.40 16 40 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.11 5.90 6.24 -2.91 -0.02 5.89 16 43 H 0.29 13.71 8.30 -92.71 -0.77 12.95 16 44 H 0.09 4.99 6.47 -2.91 -0.02 4.97 16 45 H 0.09 1.13 8.13 -2.39 -0.02 1.12 16 46 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.10 1.05 7.94 -2.39 -0.02 1.03 16 Total: -1.00 -66.06 405.77 -0.68 -66.75 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.52 Total: 42.20 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.86 Total: -13.50 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -7.95 Total: -97.68 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.10 Total: -39.30 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -66.06 -0.68 -66.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453651765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.702 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds