Wall clock time and date at job start Wed Apr 1 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46766 * 124.34796 * 90.00188 * 3 2 1 5 5 C 1.54483 * 105.47326 * 162.98089 * 4 3 2 6 6 H 1.08999 * 110.96902 * 267.29847 * 5 4 3 7 7 N 1.46497 * 110.96737 * 143.57333 * 5 4 3 8 8 C 1.34778 * 120.00220 * 155.00280 * 7 5 4 9 9 O 1.21593 * 119.99710 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00011 * 179.97438 * 8 7 5 11 11 C 1.46507 * 119.99684 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46862 * 325.00456 * 11 10 8 13 13 C 1.52998 * 109.47057 * 205.00054 * 11 10 8 14 14 C 1.50710 * 109.46730 * 65.00234 * 13 11 10 15 15 H 1.08000 * 120.00156 * 0.02562 * 14 13 11 16 16 C 1.37876 * 119.99634 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99889 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47009 * 60.00069 * 18 16 14 20 20 H 1.48504 * 109.47215 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47060 * 300.00210 * 18 16 14 22 22 C 1.50703 * 109.46860 * 85.00086 * 11 10 8 23 23 C 1.38236 * 119.99887 * 39.72999 * 22 11 10 24 24 C 1.38237 * 120.00138 * 179.78433 * 23 22 11 25 25 C 1.38236 * 119.99429 * 0.44096 * 24 23 22 26 26 C 1.38230 * 120.00262 * 359.81111 * 25 24 23 27 27 C 1.38235 * 119.99809 * 219.99838 * 22 11 10 28 28 C 1.54623 * 101.76373 * 25.41984 * 5 4 3 29 29 C 1.34415 * 124.35042 * 269.70135 * 3 2 1 30 30 O 1.21282 * 124.94374 * 0.39165 * 29 3 2 31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 36 36 H 1.08994 * 110.24676 * 281.98353 * 4 3 2 37 37 H 1.09002 * 110.24535 * 43.89680 * 4 3 2 38 38 H 0.97000 * 120.00054 * 335.00217 * 7 5 4 39 39 H 0.97000 * 120.00263 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46952 * 184.99747 * 13 11 10 41 41 H 1.08996 * 109.47104 * 305.00636 * 13 11 10 42 42 H 0.96998 * 120.00282 * 180.02562 * 17 16 14 43 43 H 1.08006 * 120.00064 * 359.97438 * 23 22 11 44 44 H 1.07991 * 120.00024 * 180.26841 * 24 23 22 45 45 H 1.08000 * 119.99801 * 179.83037 * 25 24 23 46 46 H 1.08003 * 120.00091 * 179.97438 * 26 25 24 47 47 H 1.07993 * 120.00117 * 359.97438 * 27 22 11 48 48 H 1.08997 * 110.49086 * 93.87557 * 28 5 4 49 49 H 1.09005 * 110.48712 * 216.39118 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1744 3.3442 0.7488 6 1 4.2331 3.1033 0.8448 7 7 2.8473 4.5636 1.4918 8 6 3.7696 5.5368 1.6292 9 8 4.8732 5.4024 1.1368 10 7 3.4685 6.6590 2.3124 11 6 4.4712 7.7166 2.4622 12 1 5.4607 7.2687 2.5538 13 6 4.1641 8.5364 3.7169 14 6 4.3187 7.6648 4.9367 15 1 4.6074 6.6299 4.8278 16 6 4.0924 8.1891 6.1916 17 7 3.7412 9.4495 6.3243 18 14 4.2846 7.1090 7.7036 19 1 5.6774 6.5989 7.7736 20 1 3.9864 7.9047 8.9215 21 1 3.3421 5.9646 7.6175 22 6 4.4369 8.6160 1.2535 23 6 3.2260 8.9615 0.6831 24 6 3.1943 9.7902 -0.4229 25 6 4.3740 10.2660 -0.9640 26 6 5.5851 9.9163 -0.3968 27 6 5.6167 9.0911 0.7119 28 6 2.7693 3.4755 -0.7377 29 6 2.2765 2.0944 -1.1097 30 8 2.1328 1.6904 -2.2442 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.3637 2.5307 1.6430 37 1 2.8310 1.5526 1.9389 38 1 1.9671 4.6707 1.8849 39 1 2.5882 6.7660 2.7055 40 1 4.8560 9.3763 3.7805 41 1 3.1418 8.9108 3.6651 42 1 3.5824 9.8185 7.2072 43 1 2.3045 8.5864 1.1035 44 1 2.2481 10.0635 -0.8658 45 1 4.3494 10.9112 -1.8297 46 1 6.5068 10.2878 -0.8198 47 1 6.5629 8.8181 1.1551 48 1 1.9743 4.2122 -0.8528 49 1 3.6320 3.7484 -1.3455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454714603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:27 Heat of formation + Delta-G solvation = -41.917260 kcal Electronic energy + Delta-G solvation = -30132.081674 eV Core-core repulsion = 26058.728704 eV Total energy + Delta-G solvation = -4073.352970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.84310 -39.70651 -38.60161 -36.80503 -35.45994 -34.69846 -32.90864 -32.47987 -30.90396 -30.43340 -29.22089 -28.67849 -27.53866 -24.93177 -23.72826 -22.35470 -22.16998 -21.90053 -20.80401 -19.87530 -19.61523 -18.19863 -17.18220 -16.79823 -16.55552 -16.17148 -15.92126 -15.42797 -15.00199 -14.70394 -14.61107 -14.47039 -14.19121 -13.99237 -13.80003 -13.66442 -13.59840 -13.24077 -13.01321 -12.75580 -12.64974 -12.53724 -12.29968 -12.11683 -11.97983 -11.55883 -11.44962 -11.39637 -11.15132 -10.93421 -10.73568 -10.65665 -10.47234 -10.16089 -9.80009 -9.77231 -9.33738 -9.07637 -9.04509 -8.53988 -8.47783 -8.37861 -8.17524 -6.11805 -4.15387 1.78810 1.81694 2.38524 2.58235 3.00099 3.24998 3.31165 3.33353 3.55185 4.10814 4.20867 4.28362 4.36602 4.57381 4.69066 4.73138 4.81523 4.89115 5.02409 5.16598 5.24796 5.27447 5.28050 5.28384 5.36724 5.38407 5.50265 5.54762 5.69828 5.74897 5.81872 5.91750 5.95091 6.14109 6.23681 6.36058 6.42754 6.50251 6.58872 6.81924 6.85534 6.86706 6.91373 7.07246 7.21989 7.41819 7.48518 7.64370 7.84922 7.93922 8.22851 8.41474 8.90431 8.99295 9.49585 10.98661 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007989 B = 0.003319 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.807746 B = 8433.144725 C =11293.252089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.097 3.903 5 C 0.160 3.840 6 H 0.114 0.886 7 N -0.743 5.743 8 C 0.706 3.294 9 O -0.593 6.593 10 N -0.714 5.714 11 C 0.203 3.797 12 H 0.087 0.913 13 C 0.024 3.976 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.071 4.071 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.107 4.107 28 C -0.169 4.169 29 C 0.522 3.478 30 O -0.532 6.532 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.397 0.603 39 H 0.397 0.603 40 H 0.035 0.965 41 H 0.024 0.976 42 H 0.262 0.738 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.108 0.892 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -11.000 -10.731 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.027 4.027 5 C 0.053 3.947 6 H 0.132 0.868 7 N -0.399 5.399 8 C 0.406 3.594 9 O -0.471 6.471 10 N -0.366 5.366 11 C 0.098 3.902 12 H 0.105 0.895 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.073 4.073 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.126 4.126 28 C -0.211 4.211 29 C 0.310 3.690 30 O -0.409 6.409 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.231 0.769 39 H 0.231 0.769 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.086 -11.251 -11.613 16.950 hybrid contribution -0.871 -0.334 1.411 1.691 sum -5.957 -11.585 -10.202 16.546 Atomic orbital electron populations 1.22161 0.95721 1.02384 1.02543 1.21364 0.94423 0.80990 1.03266 1.48327 1.66170 1.13948 1.07030 1.22338 0.99862 0.92957 0.87571 1.21439 1.00755 0.83377 0.89174 0.86834 1.44973 1.16570 1.18219 1.60173 1.15953 0.83953 0.80138 0.79377 1.90896 1.21661 1.80380 1.54154 1.45143 1.17841 1.17147 1.56425 1.20132 0.92122 0.85392 0.92567 0.89500 1.19395 0.97993 0.94978 0.88984 1.21097 1.47076 0.97004 0.90659 0.92404 1.24990 0.95150 0.94940 0.99069 1.69946 1.46727 1.12810 1.23599 0.86653 0.78699 0.80339 0.82256 1.20220 1.21347 1.20344 1.20587 0.93026 0.97119 0.96555 1.20879 0.97597 0.98020 0.95995 1.21036 0.97761 0.98584 0.97009 1.20990 0.92846 1.01144 1.00337 1.21043 0.97580 0.98782 0.96710 1.21017 0.98043 0.97658 0.95877 1.22895 1.04280 0.95370 0.98555 1.20920 0.76267 0.87502 0.84286 1.90717 1.53704 1.75287 1.21165 0.92229 0.91399 0.92315 0.90205 0.89944 0.90463 0.89330 0.76852 0.76867 0.94675 0.95757 0.92798 0.86679 0.86830 0.86898 0.86642 0.86180 0.87359 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.12 0.91 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -5.69 2.93 -172.41 -0.51 -6.20 16 4 C 0.10 0.73 7.08 -3.12 -0.02 0.71 16 5 C 0.16 1.63 3.53 -66.30 -0.23 1.40 16 6 H 0.11 1.35 7.54 -51.93 -0.39 0.96 16 7 N -0.74 -8.37 5.16 -57.08 -0.29 -8.66 16 8 C 0.71 11.38 8.52 -86.91 -0.74 10.64 16 9 O -0.59 -11.80 15.65 5.28 0.08 -11.71 16 10 N -0.71 -11.82 4.03 -59.81 -0.24 -12.07 16 11 C 0.20 3.94 2.12 -69.08 -0.15 3.79 16 12 H 0.09 1.87 7.44 -51.93 -0.39 1.49 16 13 C 0.02 0.55 4.50 -27.88 -0.13 0.42 16 14 C -0.52 -13.25 8.84 -34.44 -0.30 -13.56 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 18 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 C -0.07 -1.29 4.91 -104.62 -0.51 -1.80 16 23 C -0.11 -1.74 9.33 -39.58 -0.37 -2.10 16 24 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 25 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 28 C -0.17 -1.84 6.59 -26.74 -0.18 -2.02 16 29 C 0.52 6.30 8.02 -10.86 -0.09 6.22 16 30 O -0.53 -8.42 17.59 5.56 0.10 -8.33 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.70 7.92 -51.93 -0.41 0.28 16 36 H 0.08 0.48 7.80 -51.93 -0.40 0.07 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 3.40 8.44 -40.82 -0.34 3.05 16 39 H 0.40 5.92 8.62 -40.82 -0.35 5.57 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.12 1.73 7.71 -52.48 -0.40 1.32 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 47 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 48 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 49 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -33.33 412.03 -10.70 -44.03 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.73 Total: 9.28 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.04 Total: -3.69 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.30 Total: -51.17 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.33 -10.70 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454714603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.111 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds