Wall clock time and date at job start Wed Apr 1 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46766 * 124.34796 * 90.00188 * 3 2 1 5 5 C 1.54483 * 105.47326 * 162.98089 * 4 3 2 6 6 H 1.08999 * 110.96902 * 267.29847 * 5 4 3 7 7 N 1.46497 * 110.96737 * 143.57333 * 5 4 3 8 8 C 1.34778 * 120.00220 * 155.00280 * 7 5 4 9 9 O 1.21593 * 119.99710 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00011 * 179.97438 * 8 7 5 11 11 C 1.46507 * 119.99684 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46862 * 325.00456 * 11 10 8 13 13 C 1.52998 * 109.47057 * 205.00054 * 11 10 8 14 14 C 1.50710 * 109.46730 * 65.00234 * 13 11 10 15 15 H 1.08000 * 120.00156 * 0.02562 * 14 13 11 16 16 C 1.37876 * 119.99634 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99889 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47009 * 60.00069 * 18 16 14 20 20 H 1.48504 * 109.47215 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47060 * 300.00210 * 18 16 14 22 22 C 1.50703 * 109.46860 * 85.00086 * 11 10 8 23 23 C 1.38236 * 119.99887 * 39.72999 * 22 11 10 24 24 C 1.38237 * 120.00138 * 179.78433 * 23 22 11 25 25 C 1.38236 * 119.99429 * 0.44096 * 24 23 22 26 26 C 1.38230 * 120.00262 * 359.81111 * 25 24 23 27 27 C 1.38235 * 119.99809 * 219.99838 * 22 11 10 28 28 C 1.54623 * 101.76373 * 25.41984 * 5 4 3 29 29 C 1.34415 * 124.35042 * 269.70135 * 3 2 1 30 30 O 1.21282 * 124.94374 * 0.39165 * 29 3 2 31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 36 36 H 1.08994 * 110.24676 * 281.98353 * 4 3 2 37 37 H 1.09002 * 110.24535 * 43.89680 * 4 3 2 38 38 H 0.97000 * 120.00054 * 335.00217 * 7 5 4 39 39 H 0.97000 * 120.00263 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46952 * 184.99747 * 13 11 10 41 41 H 1.08996 * 109.47104 * 305.00636 * 13 11 10 42 42 H 0.96998 * 120.00282 * 180.02562 * 17 16 14 43 43 H 1.08006 * 120.00064 * 359.97438 * 23 22 11 44 44 H 1.07991 * 120.00024 * 180.26841 * 24 23 22 45 45 H 1.08000 * 119.99801 * 179.83037 * 25 24 23 46 46 H 1.08003 * 120.00091 * 179.97438 * 26 25 24 47 47 H 1.07993 * 120.00117 * 359.97438 * 27 22 11 48 48 H 1.08997 * 110.49086 * 93.87557 * 28 5 4 49 49 H 1.09005 * 110.48712 * 216.39118 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1744 3.3442 0.7488 6 1 4.2331 3.1033 0.8448 7 7 2.8473 4.5636 1.4918 8 6 3.7696 5.5368 1.6292 9 8 4.8732 5.4024 1.1368 10 7 3.4685 6.6590 2.3124 11 6 4.4712 7.7166 2.4622 12 1 5.4607 7.2687 2.5538 13 6 4.1641 8.5364 3.7169 14 6 4.3187 7.6648 4.9367 15 1 4.6074 6.6299 4.8278 16 6 4.0924 8.1891 6.1916 17 7 3.7412 9.4495 6.3243 18 14 4.2846 7.1090 7.7036 19 1 5.6774 6.5989 7.7736 20 1 3.9864 7.9047 8.9215 21 1 3.3421 5.9646 7.6175 22 6 4.4369 8.6160 1.2535 23 6 3.2260 8.9615 0.6831 24 6 3.1943 9.7902 -0.4229 25 6 4.3740 10.2660 -0.9640 26 6 5.5851 9.9163 -0.3968 27 6 5.6167 9.0911 0.7119 28 6 2.7693 3.4755 -0.7377 29 6 2.2765 2.0944 -1.1097 30 8 2.1328 1.6904 -2.2442 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.3637 2.5307 1.6430 37 1 2.8310 1.5526 1.9389 38 1 1.9671 4.6707 1.8849 39 1 2.5882 6.7660 2.7055 40 1 4.8560 9.3763 3.7805 41 1 3.1418 8.9108 3.6651 42 1 3.5824 9.8185 7.2072 43 1 2.3045 8.5864 1.1035 44 1 2.2481 10.0635 -0.8658 45 1 4.3494 10.9112 -1.8297 46 1 6.5068 10.2878 -0.8198 47 1 6.5629 8.8181 1.1551 48 1 1.9743 4.2122 -0.8528 49 1 3.6320 3.7484 -1.3455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454714603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:25 Heat of formation + Delta-G solvation = -62.783038 kcal Electronic energy + Delta-G solvation = -30132.986482 eV Core-core repulsion = 26058.728704 eV Total energy + Delta-G solvation = -4074.257778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79195 -40.96259 -39.82076 -37.83796 -36.79608 -35.78269 -34.69101 -33.60638 -32.10916 -31.63354 -30.51707 -29.88016 -28.41062 -26.60902 -24.42746 -23.76066 -23.46817 -23.02633 -21.95301 -21.24787 -20.50641 -19.43581 -18.58887 -18.05348 -17.60023 -17.47573 -16.94624 -16.55218 -16.42931 -16.25379 -15.81734 -15.63044 -15.20158 -14.98706 -14.85098 -14.66080 -14.53379 -14.40111 -14.18448 -14.14010 -14.04166 -13.61686 -13.38055 -13.27913 -12.99695 -12.87201 -12.75588 -12.60945 -12.40444 -12.30559 -12.11866 -12.01370 -11.83561 -11.54045 -11.31445 -11.26956 -11.07094 -10.54146 -10.25733 -9.81856 -9.75062 -9.68835 -9.47330 -8.15763 -6.25722 0.54846 0.59811 1.43511 1.44304 1.46028 1.53309 1.65526 2.03037 2.26999 2.43852 2.98168 3.17122 3.25120 3.41917 3.54586 3.83310 3.99241 4.04928 4.08111 4.14066 4.24277 4.26374 4.35449 4.48708 4.49233 4.54394 4.58051 4.69853 4.76908 4.80301 4.83236 4.83857 4.86526 4.96867 5.16883 5.23789 5.28235 5.34549 5.48204 5.51377 5.53488 5.64785 5.66566 5.68342 5.82714 5.92272 5.99800 6.15391 6.20267 6.25414 6.87306 7.03975 7.21775 7.43394 7.71273 8.94701 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007989 B = 0.003319 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.807746 B = 8433.144725 C =11293.252089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.611 5.611 4 C 0.104 3.896 5 C 0.161 3.839 6 H 0.097 0.903 7 N -0.721 5.721 8 C 0.706 3.294 9 O -0.633 6.633 10 N -0.710 5.710 11 C 0.221 3.779 12 H 0.058 0.942 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.164 4.164 29 C 0.518 3.482 30 O -0.578 6.578 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.414 0.586 39 H 0.406 0.594 40 H 0.002 0.998 41 H 0.013 0.987 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 -12.053 -10.507 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.345 5.345 4 C -0.019 4.019 5 C 0.054 3.946 6 H 0.115 0.885 7 N -0.378 5.378 8 C 0.406 3.594 9 O -0.514 6.514 10 N -0.363 5.363 11 C 0.115 3.885 12 H 0.076 0.924 13 C 0.000 4.000 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.189 4.189 17 N -0.568 5.568 18 Si 0.782 3.218 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.187 1.187 22 C -0.098 4.098 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.205 4.205 29 C 0.306 3.694 30 O -0.458 6.458 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.252 0.748 39 H 0.242 0.758 40 H 0.020 0.980 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.675 -12.347 -11.352 18.052 hybrid contribution -0.377 0.014 1.289 1.343 sum -7.052 -12.333 -10.063 17.410 Atomic orbital electron populations 1.22113 0.94946 1.03328 1.01826 1.21587 0.95029 0.79912 1.04078 1.48431 1.64793 1.14549 1.06679 1.22436 1.00678 0.91782 0.86980 1.21432 1.00643 0.83769 0.88757 0.88519 1.44713 1.16390 1.17303 1.59385 1.16035 0.84035 0.80453 0.78904 1.90875 1.23697 1.81135 1.55672 1.44900 1.17571 1.16977 1.56825 1.19547 0.91287 0.85690 0.91992 0.92414 1.19135 0.96255 0.94154 0.90417 1.21381 1.46270 0.97127 0.91622 0.92522 1.25782 0.94917 0.96085 1.02075 1.70070 1.48012 1.14497 1.24211 0.85640 0.78725 0.78951 0.78525 1.20256 1.21307 1.18696 1.20511 0.94353 0.98172 0.96777 1.21055 0.97106 0.98676 0.96788 1.21429 0.99469 0.97440 0.96107 1.21445 0.92127 1.00562 1.00815 1.21373 0.99390 0.97862 0.95751 1.21179 0.97649 0.99006 0.97319 1.22802 1.03826 0.95224 0.98689 1.21038 0.76085 0.87975 0.84271 1.90688 1.55953 1.76178 1.23009 0.94557 0.89716 0.91282 0.87210 0.91340 0.87866 0.87082 0.74790 0.75822 0.97969 0.96869 0.92836 0.85900 0.83801 0.83434 0.84107 0.86947 0.86577 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16 2 C 0.11 1.47 6.65 86.38 0.57 2.04 16 3 N -0.61 -10.08 2.93 -817.97 -2.40 -12.47 16 4 C 0.10 1.26 7.08 86.83 0.61 1.87 16 5 C 0.16 3.08 3.53 46.05 0.16 3.24 16 6 H 0.10 2.26 7.54 -2.39 -0.02 2.24 16 7 N -0.72 -15.18 5.16 -452.76 -2.34 -17.51 16 8 C 0.71 22.70 8.52 179.05 1.53 24.23 16 9 O -0.63 -25.80 15.65 -4.01 -0.06 -25.87 16 10 N -0.71 -23.74 4.03 -461.39 -1.86 -25.60 16 11 C 0.22 8.95 2.12 44.24 0.09 9.04 16 12 H 0.06 2.65 7.44 -2.39 -0.02 2.63 16 13 C 0.04 1.82 4.50 29.85 0.13 1.96 16 14 C -0.53 -27.30 8.84 25.60 0.23 -27.07 16 15 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -52.85 13.29 21.45 0.28 -52.56 16 18 Si 0.96 41.70 29.54 68.60 2.03 43.72 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 C -0.10 -3.58 4.91 -19.86 -0.10 -3.68 16 23 C -0.12 -3.79 9.33 22.27 0.21 -3.58 16 24 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 25 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 26 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 27 C -0.13 -4.69 9.67 22.27 0.22 -4.47 16 28 C -0.16 -3.51 6.59 30.59 0.20 -3.30 16 29 C 0.52 12.33 8.02 87.90 0.70 13.04 16 30 O -0.58 -18.72 17.59 -3.04 -0.05 -18.78 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.10 7.92 -2.39 -0.02 1.08 16 36 H 0.10 0.82 7.80 -2.39 -0.02 0.80 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.41 6.01 8.44 -92.71 -0.78 5.23 16 39 H 0.41 11.94 8.62 -92.71 -0.80 11.14 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.12 3.61 7.71 -2.91 -0.02 3.59 16 44 H 0.14 2.97 8.06 -2.92 -0.02 2.95 16 45 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 46 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.11 3.96 8.04 -2.91 -0.02 3.94 16 48 H 0.12 2.29 8.08 -2.39 -0.02 2.27 16 49 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -75.43 412.03 1.42 -74.01 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.62 Total: 31.66 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.43 Total: 3.40 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -6.31 Total: -108.15 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.12 Total: -44.65 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -75.43 1.42 -74.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454714603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.225 kcal (2) G-P(sol) polarization free energy of solvation -75.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds