Wall clock time and date at job start Wed Apr 1 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46950 * 2 1 4 4 C 1.46770 * 124.35278 * 270.19757 * 3 2 1 5 5 C 1.54478 * 105.41656 * 197.24527 * 4 3 2 6 6 H 1.08998 * 110.96993 * 92.48835 * 5 4 3 7 7 N 1.46497 * 111.00311 * 216.24356 * 5 4 3 8 8 C 1.34777 * 119.99694 * 198.85120 * 7 5 4 9 9 O 1.21586 * 120.00501 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99563 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99774 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47231 * 325.00749 * 11 10 8 13 13 C 1.52995 * 109.47428 * 205.00194 * 11 10 8 14 14 C 1.50699 * 109.47290 * 65.00213 * 13 11 10 15 15 H 1.08000 * 119.99719 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00052 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00256 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99914 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46871 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46996 * 119.99429 * 18 16 14 21 21 H 1.48499 * 109.46861 * 239.99837 * 18 16 14 22 22 C 1.50706 * 109.46891 * 85.00280 * 11 10 8 23 23 C 1.38238 * 119.99990 * 39.72341 * 22 11 10 24 24 C 1.38230 * 120.00099 * 179.76405 * 23 22 11 25 25 C 1.38235 * 119.99981 * 0.51516 * 24 23 22 26 26 C 1.38241 * 119.99754 * 359.74124 * 25 24 23 27 27 C 1.38227 * 120.00114 * 0.02562 * 26 25 24 28 28 C 1.54627 * 101.76190 * 334.37653 * 5 4 3 29 29 C 1.34417 * 124.35171 * 90.02265 * 3 2 1 30 30 O 1.21283 * 124.94355 * 359.61657 * 29 3 2 31 31 H 1.09004 * 109.46653 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47123 * 300.00011 * 1 2 3 33 33 H 1.08999 * 109.47272 * 60.00633 * 1 2 3 34 34 H 1.09000 * 109.47123 * 239.99989 * 2 1 3 35 35 H 1.09000 * 109.47097 * 119.99892 * 2 1 3 36 36 H 1.09004 * 110.45406 * 78.17088 * 4 3 2 37 37 H 1.09003 * 110.17218 * 316.17400 * 4 3 2 38 38 H 0.96996 * 120.00020 * 18.84914 * 7 5 4 39 39 H 0.96996 * 120.00151 * 359.97438 * 10 8 7 40 40 H 1.08995 * 109.47501 * 185.00960 * 13 11 10 41 41 H 1.09010 * 109.47005 * 305.00285 * 13 11 10 42 42 H 0.96995 * 119.99660 * 180.02562 * 17 16 14 43 43 H 1.08004 * 119.99884 * 0.02562 * 23 22 11 44 44 H 1.08004 * 120.00379 * 180.22611 * 24 23 22 45 45 H 1.07998 * 120.00319 * 179.71625 * 25 24 23 46 46 H 1.07998 * 120.00061 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00280 * 179.97438 * 27 26 25 48 48 H 1.08998 * 110.48642 * 266.11574 * 28 5 4 49 49 H 1.09006 * 110.48810 * 143.47535 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2904 2.1635 -1.2117 5 6 3.1768 3.3413 -0.7497 6 1 4.2342 3.0957 -0.8480 7 7 2.8540 4.5634 -1.4903 8 6 3.7344 5.5833 -1.5239 9 8 4.7963 5.4894 -0.9392 10 7 3.4376 6.7074 -2.2057 11 6 4.3943 7.8163 -2.2418 12 1 4.9164 7.8769 -1.2870 13 6 3.6471 9.1265 -2.4987 14 6 2.7375 9.4226 -1.3343 15 1 2.6961 8.7439 -0.4951 16 6 1.9573 10.5593 -1.3406 17 7 2.0073 11.3855 -2.3627 18 14 0.8302 10.9267 0.1031 19 1 0.9583 9.8498 1.1176 20 1 1.2115 12.2272 0.7102 21 1 -0.5754 10.9949 -0.3711 22 6 5.3927 7.5826 -3.3463 23 6 4.9752 7.0608 -4.5564 24 6 5.8901 6.8510 -5.5711 25 6 7.2243 7.1530 -5.3721 26 6 7.6427 7.6698 -4.1601 27 6 6.7270 7.8841 -3.1471 28 6 2.7754 3.4733 0.7377 29 6 2.2715 2.0962 1.1097 30 8 2.1228 1.6940 2.2442 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.3606 2.5368 -1.6409 37 1 2.8236 1.5536 -1.9410 38 1 2.0067 4.6384 -1.9565 39 1 2.5906 6.7822 -2.6725 40 1 4.3656 9.9379 -2.6141 41 1 3.0541 9.0342 -3.4087 42 1 1.4586 12.1854 -2.3669 43 1 3.9335 6.8210 -4.7105 44 1 5.5634 6.4467 -6.5178 45 1 7.9399 6.9848 -6.1633 46 1 8.6851 7.9054 -4.0045 47 1 7.0539 8.2875 -2.2001 48 1 1.9840 4.2136 0.8550 49 1 3.6410 3.7395 1.3443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454714605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:31 Heat of formation + Delta-G solvation = -41.504787 kcal Electronic energy + Delta-G solvation = -30116.806100 eV Core-core repulsion = 26043.471016 eV Total energy + Delta-G solvation = -4073.335084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.82731 -39.70106 -38.60756 -36.78653 -35.45685 -34.68610 -32.90224 -32.47062 -30.90698 -30.44727 -29.20186 -28.66279 -27.55062 -24.93077 -23.71889 -22.36560 -22.17122 -21.90193 -20.78610 -19.89068 -19.59020 -18.15775 -17.17153 -16.77636 -16.58250 -16.17516 -15.93517 -15.37838 -15.07925 -14.67746 -14.58626 -14.44754 -14.19881 -13.97681 -13.79782 -13.63697 -13.59818 -13.21593 -13.02023 -12.80237 -12.63775 -12.52919 -12.28554 -12.12465 -11.94614 -11.55235 -11.43849 -11.37192 -11.14527 -10.94565 -10.75577 -10.60822 -10.48735 -10.11221 -9.79935 -9.76451 -9.30037 -9.07241 -9.03261 -8.54864 -8.48040 -8.37738 -8.18692 -6.11217 -4.14494 1.77294 1.80151 2.42355 2.58816 3.00769 3.24670 3.33904 3.38190 3.56640 4.10716 4.19016 4.29380 4.38274 4.58360 4.68410 4.73798 4.83333 4.90232 5.02270 5.13188 5.25669 5.25982 5.26920 5.31610 5.36245 5.37130 5.51569 5.53963 5.72566 5.82028 5.83129 5.90423 5.93806 6.13830 6.25242 6.34930 6.41622 6.50808 6.58908 6.83296 6.83908 6.85275 6.91416 7.06885 7.22053 7.40345 7.49226 7.64457 7.86052 7.97054 8.23706 8.42012 8.91988 8.99993 9.50882 10.99286 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007649 B = 0.003362 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3659.604339 B = 8326.379042 C =11067.036490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.099 3.901 5 C 0.162 3.838 6 H 0.110 0.890 7 N -0.744 5.744 8 C 0.706 3.294 9 O -0.592 6.592 10 N -0.714 5.714 11 C 0.202 3.798 12 H 0.087 0.913 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.071 4.071 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.107 4.107 28 C -0.170 4.170 29 C 0.523 3.477 30 O -0.531 6.531 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.397 0.603 39 H 0.397 0.603 40 H 0.035 0.965 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -18.772 -5.035 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.025 4.025 5 C 0.054 3.946 6 H 0.127 0.873 7 N -0.400 5.400 8 C 0.406 3.594 9 O -0.470 6.470 10 N -0.366 5.366 11 C 0.098 3.902 12 H 0.105 0.895 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.126 4.126 28 C -0.212 4.212 29 C 0.311 3.689 30 O -0.407 6.407 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.231 0.769 39 H 0.231 0.769 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.128 0.872 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.838 -18.949 -3.956 19.444 hybrid contribution -1.587 0.477 0.156 1.665 sum 0.251 -18.472 -3.800 18.861 Atomic orbital electron populations 1.22170 0.95746 1.02359 1.02599 1.21355 0.94411 0.81000 1.03206 1.48322 1.66505 1.13802 1.06989 1.22281 0.99732 0.92849 0.87640 1.21416 1.00326 0.83303 0.89534 0.87251 1.44985 1.21561 1.15730 1.57769 1.15943 0.83446 0.80169 0.79864 1.90896 1.24477 1.81595 1.50065 1.45137 1.22011 1.14760 1.54670 1.20130 0.87580 0.86877 0.95643 0.89487 1.19404 0.95226 0.89079 0.97701 1.21171 1.23176 1.07176 1.04142 0.92287 1.24985 0.97106 0.96151 0.95909 1.69967 1.40351 1.12760 1.30012 0.86559 0.80435 0.78403 0.82763 1.19728 1.20969 1.21094 1.20597 0.94707 0.96112 0.95823 1.20879 0.99220 0.99465 0.92930 1.21032 0.93576 1.01145 0.98672 1.20990 0.95859 1.01189 0.97325 1.21043 0.99162 1.00166 0.93751 1.21022 0.92703 0.99775 0.99089 1.22913 1.04438 0.95394 0.98446 1.20956 0.76273 0.87436 0.84275 1.90719 1.53614 1.75202 1.21156 0.91420 0.92172 0.92339 0.90268 0.89941 0.90488 0.89456 0.76866 0.76885 0.94670 0.95760 0.92932 0.86655 0.86836 0.86911 0.86645 0.86168 0.87157 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.12 0.91 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -5.76 2.93 -172.41 -0.51 -6.27 16 4 C 0.10 0.71 7.07 -3.12 -0.02 0.69 16 5 C 0.16 1.65 3.42 -66.30 -0.23 1.42 16 6 H 0.11 1.25 7.72 -51.93 -0.40 0.85 16 7 N -0.74 -8.38 5.19 -57.08 -0.30 -8.67 16 8 C 0.71 11.39 8.52 -86.91 -0.74 10.65 16 9 O -0.59 -11.79 15.75 5.29 0.08 -11.71 16 10 N -0.71 -11.83 4.03 -59.81 -0.24 -12.07 16 11 C 0.20 3.94 2.12 -69.08 -0.15 3.79 16 12 H 0.09 1.88 7.44 -51.93 -0.39 1.50 16 13 C 0.02 0.54 4.50 -27.89 -0.13 0.41 16 14 C -0.52 -13.33 8.84 -34.44 -0.30 -13.64 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 18 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.07 -1.27 4.92 -104.62 -0.51 -1.78 16 23 C -0.11 -1.70 9.33 -39.58 -0.37 -2.07 16 24 C -0.13 -1.79 10.05 -39.59 -0.40 -2.19 16 25 C -0.14 -1.87 10.05 -39.58 -0.40 -2.26 16 26 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 27 C -0.11 -1.82 9.67 -39.59 -0.38 -2.20 16 28 C -0.17 -2.02 6.59 -26.74 -0.18 -2.19 16 29 C 0.52 6.61 8.02 -10.86 -0.09 6.52 16 30 O -0.53 -8.76 17.59 5.55 0.10 -8.66 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 36 H 0.08 0.45 7.77 -51.93 -0.40 0.04 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.40 3.37 8.38 -40.82 -0.34 3.03 16 39 H 0.40 5.91 8.62 -40.82 -0.35 5.55 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.12 1.69 7.71 -52.48 -0.40 1.29 16 44 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 48 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 49 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 412.15 15.07 6.21 6.21 Total: -1.00 -33.76 412.15 -10.70 -44.46 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.73 Total: 8.83 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.03 Total: -3.46 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.31 Total: -51.40 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.76 -10.70 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454714605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.955 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds