Wall clock time and date at job start Wed Apr 1 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46950 * 2 1 4 4 C 1.46770 * 124.35278 * 270.19757 * 3 2 1 5 5 C 1.54478 * 105.41656 * 197.24527 * 4 3 2 6 6 H 1.08998 * 110.96993 * 92.48835 * 5 4 3 7 7 N 1.46497 * 111.00311 * 216.24356 * 5 4 3 8 8 C 1.34777 * 119.99694 * 198.85120 * 7 5 4 9 9 O 1.21586 * 120.00501 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99563 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99774 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47231 * 325.00749 * 11 10 8 13 13 C 1.52995 * 109.47428 * 205.00194 * 11 10 8 14 14 C 1.50699 * 109.47290 * 65.00213 * 13 11 10 15 15 H 1.08000 * 119.99719 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00052 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00256 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99914 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46871 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46996 * 119.99429 * 18 16 14 21 21 H 1.48499 * 109.46861 * 239.99837 * 18 16 14 22 22 C 1.50706 * 109.46891 * 85.00280 * 11 10 8 23 23 C 1.38238 * 119.99990 * 39.72341 * 22 11 10 24 24 C 1.38230 * 120.00099 * 179.76405 * 23 22 11 25 25 C 1.38235 * 119.99981 * 0.51516 * 24 23 22 26 26 C 1.38241 * 119.99754 * 359.74124 * 25 24 23 27 27 C 1.38227 * 120.00114 * 0.02562 * 26 25 24 28 28 C 1.54627 * 101.76190 * 334.37653 * 5 4 3 29 29 C 1.34417 * 124.35171 * 90.02265 * 3 2 1 30 30 O 1.21283 * 124.94355 * 359.61657 * 29 3 2 31 31 H 1.09004 * 109.46653 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47123 * 300.00011 * 1 2 3 33 33 H 1.08999 * 109.47272 * 60.00633 * 1 2 3 34 34 H 1.09000 * 109.47123 * 239.99989 * 2 1 3 35 35 H 1.09000 * 109.47097 * 119.99892 * 2 1 3 36 36 H 1.09004 * 110.45406 * 78.17088 * 4 3 2 37 37 H 1.09003 * 110.17218 * 316.17400 * 4 3 2 38 38 H 0.96996 * 120.00020 * 18.84914 * 7 5 4 39 39 H 0.96996 * 120.00151 * 359.97438 * 10 8 7 40 40 H 1.08995 * 109.47501 * 185.00960 * 13 11 10 41 41 H 1.09010 * 109.47005 * 305.00285 * 13 11 10 42 42 H 0.96995 * 119.99660 * 180.02562 * 17 16 14 43 43 H 1.08004 * 119.99884 * 0.02562 * 23 22 11 44 44 H 1.08004 * 120.00379 * 180.22611 * 24 23 22 45 45 H 1.07998 * 120.00319 * 179.71625 * 25 24 23 46 46 H 1.07998 * 120.00061 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00280 * 179.97438 * 27 26 25 48 48 H 1.08998 * 110.48642 * 266.11574 * 28 5 4 49 49 H 1.09006 * 110.48810 * 143.47535 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2904 2.1635 -1.2117 5 6 3.1768 3.3413 -0.7497 6 1 4.2342 3.0957 -0.8480 7 7 2.8540 4.5634 -1.4903 8 6 3.7344 5.5833 -1.5239 9 8 4.7963 5.4894 -0.9392 10 7 3.4376 6.7074 -2.2057 11 6 4.3943 7.8163 -2.2418 12 1 4.9164 7.8769 -1.2870 13 6 3.6471 9.1265 -2.4987 14 6 2.7375 9.4226 -1.3343 15 1 2.6961 8.7439 -0.4951 16 6 1.9573 10.5593 -1.3406 17 7 2.0073 11.3855 -2.3627 18 14 0.8302 10.9267 0.1031 19 1 0.9583 9.8498 1.1176 20 1 1.2115 12.2272 0.7102 21 1 -0.5754 10.9949 -0.3711 22 6 5.3927 7.5826 -3.3463 23 6 4.9752 7.0608 -4.5564 24 6 5.8901 6.8510 -5.5711 25 6 7.2243 7.1530 -5.3721 26 6 7.6427 7.6698 -4.1601 27 6 6.7270 7.8841 -3.1471 28 6 2.7754 3.4733 0.7377 29 6 2.2715 2.0962 1.1097 30 8 2.1228 1.6940 2.2442 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.3606 2.5368 -1.6409 37 1 2.8236 1.5536 -1.9410 38 1 2.0067 4.6384 -1.9565 39 1 2.5906 6.7822 -2.6725 40 1 4.3656 9.9379 -2.6141 41 1 3.0541 9.0342 -3.4087 42 1 1.4586 12.1854 -2.3669 43 1 3.9335 6.8210 -4.7105 44 1 5.5634 6.4467 -6.5178 45 1 7.9399 6.9848 -6.1633 46 1 8.6851 7.9054 -4.0045 47 1 7.0539 8.2875 -2.2001 48 1 1.9840 4.2136 0.8550 49 1 3.6410 3.7395 1.3443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454714605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:30 Heat of formation + Delta-G solvation = -63.023377 kcal Electronic energy + Delta-G solvation = -30117.739216 eV Core-core repulsion = 26043.471016 eV Total energy + Delta-G solvation = -4074.268200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.79869 -40.95938 -39.81084 -37.84689 -36.79860 -35.77986 -34.70839 -33.60779 -32.10243 -31.61858 -30.51945 -29.87662 -28.43071 -26.61771 -24.42485 -23.76216 -23.46695 -23.01981 -21.93808 -21.24928 -20.52293 -19.40100 -18.59548 -18.05839 -17.59666 -17.48564 -16.99896 -16.53267 -16.42746 -16.29930 -15.79401 -15.61024 -15.23601 -14.94173 -14.85389 -14.66244 -14.53721 -14.39812 -14.26432 -14.13273 -14.01876 -13.62383 -13.38346 -13.27981 -12.97686 -12.91095 -12.74429 -12.60478 -12.45105 -12.32110 -12.10108 -12.01036 -11.82649 -11.54851 -11.28973 -11.27970 -11.07573 -10.57186 -10.26024 -9.82024 -9.74365 -9.68022 -9.46027 -8.18577 -6.27638 0.56319 0.61575 1.38254 1.42331 1.42849 1.52670 1.65897 2.01881 2.28067 2.40939 2.99634 3.14811 3.24461 3.40095 3.56178 3.82833 3.98817 4.06296 4.09524 4.14499 4.26132 4.26396 4.37325 4.48962 4.49199 4.54019 4.58240 4.70886 4.77173 4.81434 4.83288 4.83639 4.86951 4.97322 5.18101 5.25490 5.28611 5.34208 5.47467 5.51423 5.54582 5.66313 5.67705 5.69703 5.81636 5.92974 5.98593 6.15461 6.20576 6.25545 6.85770 7.03086 7.22110 7.41511 7.71608 8.92231 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007649 B = 0.003362 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3659.604339 B = 8326.379042 C =11067.036490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.611 5.611 4 C 0.107 3.893 5 C 0.164 3.836 6 H 0.099 0.901 7 N -0.721 5.721 8 C 0.705 3.295 9 O -0.632 6.632 10 N -0.710 5.710 11 C 0.220 3.780 12 H 0.055 0.945 13 C 0.038 3.962 14 C -0.524 4.524 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.275 1.275 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.170 4.170 29 C 0.518 3.482 30 O -0.579 6.579 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.415 0.585 39 H 0.406 0.594 40 H 0.003 0.997 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.124 0.876 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.140 0.860 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -20.829 -7.558 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.344 5.344 4 C -0.015 4.015 5 C 0.057 3.943 6 H 0.117 0.883 7 N -0.379 5.379 8 C 0.405 3.595 9 O -0.513 6.513 10 N -0.363 5.363 11 C 0.114 3.886 12 H 0.073 0.927 13 C 0.000 4.000 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.779 3.221 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.201 1.201 22 C -0.098 4.098 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.212 4.212 29 C 0.306 3.694 30 O -0.459 6.459 31 H 0.104 0.896 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.252 0.748 39 H 0.242 0.758 40 H 0.021 0.979 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.164 0.836 45 H 0.167 0.833 46 H 0.158 0.842 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.142 -21.047 -6.535 22.068 hybrid contribution -1.327 1.089 0.890 1.933 sum -0.185 -19.958 -5.645 20.742 Atomic orbital electron populations 1.22130 0.95142 1.03337 1.01746 1.21598 0.94869 0.79775 1.04239 1.48425 1.64920 1.14458 1.06607 1.22431 1.00582 0.91565 0.86957 1.21439 1.00689 0.83816 0.88352 0.88304 1.44725 1.21295 1.14779 1.57068 1.16040 0.83527 0.80643 0.79268 1.90874 1.26521 1.82362 1.51592 1.44895 1.21953 1.14365 1.55083 1.19537 0.87786 0.86170 0.95074 0.92695 1.19141 0.94157 0.90260 0.96429 1.21424 1.23244 1.07008 1.04534 0.92863 1.25720 0.98595 0.96101 0.98210 1.70068 1.41422 1.13301 1.31769 0.85586 0.78901 0.77895 0.79737 1.19571 1.21042 1.20101 1.20485 0.94650 0.98451 0.96220 1.21060 1.00286 0.99468 0.92691 1.21438 0.93469 1.00081 0.99270 1.21453 0.96504 0.99349 0.97557 1.21364 0.99965 0.99535 0.93533 1.21166 0.93241 1.01002 0.99850 1.22839 1.03496 0.95314 0.99521 1.21008 0.76191 0.87798 0.84390 1.90686 1.55973 1.76113 1.23151 0.89618 0.94954 0.91133 0.86677 0.91475 0.87861 0.86217 0.74766 0.75815 0.97877 0.96664 0.92793 0.85766 0.83559 0.83337 0.84187 0.87196 0.87499 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.12 1.44 6.65 86.38 0.57 2.02 16 3 N -0.61 -10.13 2.93 -817.96 -2.40 -12.53 16 4 C 0.11 1.17 7.07 86.83 0.61 1.78 16 5 C 0.16 3.13 3.42 46.05 0.16 3.29 16 6 H 0.10 2.19 7.72 -2.39 -0.02 2.17 16 7 N -0.72 -15.25 5.19 -452.77 -2.35 -17.60 16 8 C 0.71 22.84 8.52 179.05 1.53 24.37 16 9 O -0.63 -25.98 15.75 -3.99 -0.06 -26.04 16 10 N -0.71 -23.86 4.03 -461.40 -1.86 -25.72 16 11 C 0.22 8.97 2.12 44.24 0.09 9.07 16 12 H 0.05 2.56 7.44 -2.39 -0.02 2.54 16 13 C 0.04 1.82 4.50 29.85 0.13 1.96 16 14 C -0.52 -27.70 8.84 25.60 0.23 -27.47 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.93 -53.03 13.29 21.45 0.28 -52.74 16 18 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C -0.10 -3.53 4.92 -19.86 -0.10 -3.63 16 23 C -0.12 -3.61 9.33 22.27 0.21 -3.41 16 24 C -0.12 -3.19 10.05 22.27 0.22 -2.96 16 25 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 26 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 27 C -0.13 -4.67 9.67 22.27 0.22 -4.45 16 28 C -0.17 -4.11 6.59 30.59 0.20 -3.91 16 29 C 0.52 13.17 8.02 87.90 0.71 13.88 16 30 O -0.58 -19.89 17.59 -3.04 -0.05 -19.94 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.08 7.93 -2.39 -0.02 1.06 16 36 H 0.10 0.71 7.77 -2.39 -0.02 0.69 16 37 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.41 5.97 8.38 -92.71 -0.78 5.20 16 39 H 0.41 11.96 8.62 -92.71 -0.80 11.16 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.12 3.49 7.71 -2.91 -0.02 3.47 16 44 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 46 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 47 H 0.11 3.88 8.04 -2.91 -0.02 3.85 16 48 H 0.11 2.63 8.08 -2.39 -0.02 2.61 16 49 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -77.55 412.15 1.41 -76.14 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.61 Total: 29.20 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.43 Total: 4.21 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -6.32 Total: -108.60 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.12 Total: -45.98 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -77.55 1.41 -76.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454714605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds