Wall clock time and date at job start Wed Apr 1 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47304 * 2 1 4 4 C 1.34776 * 120.00544 * 179.97438 * 3 2 1 5 5 O 1.21588 * 119.99597 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00218 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99965 * 185.42150 * 6 4 3 8 8 C 1.50690 * 110.02085 * 299.50801 * 7 6 4 9 9 O 1.21290 * 120.00298 * 141.17197 * 8 7 6 10 10 N 1.34776 * 119.99995 * 321.16441 * 8 7 6 11 11 C 1.39941 * 120.00415 * 173.25181 * 10 8 7 12 12 C 1.39295 * 119.94331 * 327.35135 * 11 10 8 13 13 C 1.38489 * 120.42564 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32228 * 0.27397 * 13 12 11 15 15 C 1.40740 * 119.88239 * 359.45945 * 14 13 12 16 16 C 1.41413 * 120.20904 * 180.27643 * 15 14 13 17 17 H 1.07994 * 119.99815 * 211.22600 * 16 15 14 18 18 C 1.39927 * 120.00022 * 31.21988 * 16 15 14 19 19 N 1.30832 * 120.00398 * 7.93762 * 18 16 15 20 20 Si 1.86797 * 120.00073 * 187.93431 * 18 16 15 21 21 H 1.48504 * 109.47183 * 90.00420 * 20 18 16 22 22 H 1.48504 * 109.47304 * 210.00073 * 20 18 16 23 23 H 1.48495 * 109.47385 * 330.00416 * 20 18 16 24 24 C 1.38239 * 119.94846 * 147.33132 * 11 10 8 25 25 C 1.54269 * 110.02663 * 60.89608 * 7 6 4 26 26 C 1.54972 * 104.15799 * 95.75514 * 25 7 6 27 27 C 1.54882 * 102.78076 * 37.88666 * 26 25 7 28 28 C 1.53872 * 110.03295 * 178.10815 * 7 6 4 29 29 H 1.09000 * 109.46895 * 60.00252 * 1 2 3 30 30 H 1.09004 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47325 * 300.00143 * 1 2 3 32 32 H 1.09006 * 109.47474 * 239.99836 * 2 1 3 33 33 H 1.08998 * 109.47252 * 120.00149 * 2 1 3 34 34 H 0.97010 * 120.00166 * 0.02562 * 3 2 1 35 35 H 0.97001 * 120.00190 * 5.43594 * 6 4 3 36 36 H 0.97002 * 120.00042 * 353.25537 * 10 8 7 37 37 H 1.08003 * 119.78789 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.83595 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.05624 * 179.70203 * 14 13 12 40 40 H 0.96995 * 120.00724 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.16281 * 359.97438 * 24 11 10 42 42 H 1.09000 * 110.48655 * 214.39735 * 25 7 6 43 43 H 1.09000 * 110.49057 * 337.04444 * 25 7 6 44 44 H 1.09004 * 110.71572 * 279.56427 * 26 25 7 45 45 H 1.09003 * 110.92028 * 156.29995 * 26 25 7 46 46 H 1.08999 * 110.48540 * 203.41136 * 27 26 25 47 47 H 1.08993 * 110.48924 * 80.75954 * 27 26 25 48 48 H 1.09004 * 110.03094 * 359.95684 * 28 7 6 49 49 H 1.08998 * 110.03016 * 121.38450 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7926 2.8982 0.0000 7 6 5.2277 3.1677 -0.1193 8 6 5.9682 2.5394 1.0329 9 8 7.0476 2.0181 0.8482 10 7 5.4311 2.5570 2.2689 11 6 6.0475 1.8534 3.3098 12 6 6.7259 0.6670 3.0409 13 6 7.3399 -0.0370 4.0633 14 6 7.2815 0.4258 5.3587 15 6 6.6044 1.6260 5.6446 16 6 6.5451 2.1108 6.9717 17 1 5.6867 2.6770 7.3019 18 6 7.5984 1.8568 7.8571 19 7 8.7029 1.3087 7.4197 20 14 7.4277 2.3004 9.6636 21 1 6.8558 1.1474 10.4045 22 1 8.7638 2.6328 10.2201 23 1 6.5279 3.4734 9.8024 24 6 5.9824 2.3372 4.6032 25 6 5.7604 2.6115 -1.4560 26 6 5.7290 3.8299 -2.4131 27 6 6.1561 4.9999 -1.4924 28 6 5.4787 4.6856 -0.1425 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3880 2.1185 0.0004 35 1 3.1658 3.6342 0.0788 36 1 4.6172 3.0572 2.4371 37 1 6.7734 0.2937 2.0285 38 1 7.8637 -0.9557 3.8439 39 1 7.7578 -0.1292 6.1534 40 1 9.4333 1.1329 8.0333 41 1 5.4573 3.2575 4.8126 42 1 6.7804 2.2458 -1.3376 43 1 5.1102 1.8184 -1.8254 44 1 4.7227 3.9904 -2.8001 45 1 6.4394 3.7018 -3.2298 46 1 5.7948 5.9487 -1.8888 47 1 7.2400 5.0204 -1.3796 48 1 4.5328 5.2218 -0.0657 49 1 6.1361 4.9679 0.6799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456721398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:04 Heat of formation + Delta-G solvation = -75.386532 kcal Electronic energy + Delta-G solvation = -31018.154437 eV Core-core repulsion = 26943.350130 eV Total energy + Delta-G solvation = -4074.804307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.24071 -40.62787 -39.39996 -38.20240 -36.27269 -36.14650 -35.07273 -34.51720 -31.79542 -31.49841 -30.30776 -29.70213 -28.62484 -27.19076 -24.18766 -24.02915 -22.91474 -22.55036 -22.15975 -21.48841 -20.49122 -19.44172 -19.30766 -18.84898 -17.50888 -17.13933 -16.84534 -16.70717 -16.61421 -16.34737 -16.11823 -15.65896 -15.29707 -15.11797 -14.99182 -14.70418 -14.65647 -14.22385 -14.08245 -13.61959 -13.39230 -13.15856 -12.97488 -12.91248 -12.84461 -12.73365 -12.66764 -12.43469 -12.34366 -12.21976 -12.12454 -11.95935 -11.93552 -11.53716 -11.44074 -11.29980 -11.22907 -11.15910 -10.80258 -10.29542 -9.82555 -9.41288 -8.77016 -8.53741 -6.40185 0.80189 0.93243 1.39784 1.44543 1.53439 1.55283 1.84034 2.05731 2.21708 2.27928 2.78176 3.23639 3.42505 3.44265 3.66922 3.75029 4.13295 4.17206 4.23806 4.34031 4.36490 4.41223 4.48185 4.53351 4.61212 4.68123 4.76509 4.92089 4.94934 4.97625 5.00065 5.06597 5.07877 5.10154 5.14602 5.18945 5.21484 5.26341 5.32769 5.42981 5.44797 5.51689 5.73318 5.80397 5.96241 6.06715 6.07072 6.26540 6.59779 6.67479 6.92421 6.96148 7.08915 7.26906 7.58301 8.40670 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.003031 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.132979 B = 9236.779547 C =10478.178448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.130 3.870 3 N -0.727 5.727 4 C 0.692 3.308 5 O -0.625 6.625 6 N -0.717 5.717 7 C 0.188 3.812 8 C 0.512 3.488 9 O -0.564 6.564 10 N -0.652 5.652 11 C 0.162 3.838 12 C -0.232 4.232 13 C -0.103 4.103 14 C -0.184 4.184 15 C 0.097 3.903 16 C -0.497 4.497 17 H 0.083 0.917 18 C 0.028 3.972 19 N -0.840 5.840 20 Si 0.991 3.009 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.246 4.246 25 C -0.119 4.119 26 C -0.110 4.110 27 C -0.117 4.117 28 C -0.117 4.117 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.415 0.585 35 H 0.421 0.579 36 H 0.413 0.587 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.286 0.714 41 H 0.115 0.885 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.126 0.874 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.535 9.633 -16.644 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.005 3.995 3 N -0.385 5.385 4 C 0.392 3.608 5 O -0.504 6.504 6 N -0.378 5.378 7 C 0.096 3.904 8 C 0.299 3.701 9 O -0.441 6.441 10 N -0.296 5.296 11 C 0.069 3.931 12 C -0.253 4.253 13 C -0.122 4.122 14 C -0.204 4.204 15 C 0.094 3.906 16 C -0.527 4.527 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.467 5.467 20 Si 0.812 3.188 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.268 4.268 25 C -0.159 4.159 26 C -0.147 4.147 27 C -0.155 4.155 28 C -0.155 4.155 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.252 0.748 35 H 0.261 0.739 36 H 0.249 0.751 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.133 0.867 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.076 0.924 48 H 0.144 0.856 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.878 8.344 -16.773 24.558 hybrid contribution -0.176 0.108 1.075 1.095 sum -16.055 8.452 -15.698 23.992 Atomic orbital electron populations 1.21928 0.91189 1.04156 1.03548 1.21186 0.96227 0.81417 1.00657 1.44985 1.04181 1.09918 1.79425 1.16306 0.83426 0.83479 0.77623 1.91025 1.56225 1.44928 1.58265 1.45051 1.06536 1.06522 1.79666 1.20968 0.79663 0.97872 0.91865 1.21604 0.85605 0.78564 0.84322 1.90664 1.23624 1.45536 1.84227 1.43259 1.28260 1.50143 1.07928 1.17492 0.96850 0.91325 0.87467 1.20394 1.09243 0.97915 0.97726 1.20797 0.99135 0.98978 0.93299 1.21325 1.05997 0.97939 0.95101 1.17765 0.89398 0.90011 0.93424 1.19788 1.04958 1.32418 0.95524 0.89899 1.26842 0.93523 0.92527 1.05565 1.69890 1.04429 1.33803 1.38557 0.85069 0.78668 0.79709 0.75382 1.18709 1.19627 1.17746 1.20930 1.13019 1.01898 0.90944 1.22619 1.01034 0.99268 0.92933 1.22500 1.02956 0.92351 0.96920 1.22373 1.00297 0.99757 0.93038 1.22507 1.04200 0.88620 1.00152 0.90357 0.90025 0.91166 0.92914 0.94307 0.74786 0.73904 0.75093 0.89401 0.87815 0.87608 0.90386 0.86729 0.92445 0.92117 0.89110 0.90476 0.87434 0.92355 0.85592 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.03 71.98 0.72 -0.75 16 2 C 0.13 2.43 6.39 86.38 0.55 2.98 16 3 N -0.73 -12.75 5.56 -478.55 -2.66 -15.41 16 4 C 0.69 18.18 7.65 179.06 1.37 19.55 16 5 O -0.62 -24.67 14.19 -3.99 -0.06 -24.73 16 6 N -0.72 -13.70 4.63 -438.12 -2.03 -15.73 16 7 C 0.19 4.79 0.84 3.58 0.00 4.79 16 8 C 0.51 19.98 4.76 87.65 0.42 20.40 16 9 O -0.56 -27.99 13.20 -3.06 -0.04 -28.03 16 10 N -0.65 -25.61 5.18 -303.65 -1.57 -27.18 16 11 C 0.16 8.10 6.27 38.10 0.24 8.34 16 12 C -0.23 -12.74 8.66 22.58 0.20 -12.54 16 13 C -0.10 -5.70 10.02 22.20 0.22 -5.48 16 14 C -0.18 -10.63 8.64 22.75 0.20 -10.43 16 15 C 0.10 5.51 5.53 -21.31 -0.12 5.39 16 16 C -0.50 -27.32 9.05 23.46 0.21 -27.11 16 17 H 0.08 4.27 7.86 -2.91 -0.02 4.25 16 18 C 0.03 1.47 5.29 85.25 0.45 1.92 16 19 N -0.84 -46.31 10.86 21.82 0.24 -46.07 16 20 Si 0.99 39.07 29.57 68.60 2.03 41.10 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 24 C -0.25 -12.65 9.70 22.85 0.22 -12.43 16 25 C -0.12 -3.27 5.54 31.70 0.18 -3.09 16 26 C -0.11 -1.80 6.91 31.91 0.22 -1.58 16 27 C -0.12 -1.70 6.83 31.67 0.22 -1.49 16 28 C -0.12 -1.97 6.24 31.32 0.20 -1.77 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.41 3.65 8.49 -92.70 -0.79 2.86 16 35 H 0.42 3.76 8.09 -92.71 -0.75 3.01 16 36 H 0.41 12.78 8.44 -92.71 -0.78 12.00 16 37 H 0.09 5.09 6.40 -2.91 -0.02 5.07 16 38 H 0.10 5.26 8.06 -2.91 -0.02 5.23 16 39 H 0.11 6.30 6.31 -2.91 -0.02 6.28 16 40 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 41 H 0.11 5.25 8.06 -2.91 -0.02 5.23 16 42 H 0.06 2.01 6.77 -2.39 -0.02 2.00 16 43 H 0.06 1.85 6.58 -2.39 -0.02 1.83 16 44 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.13 0.99 7.45 -2.38 -0.02 0.97 16 49 H 0.07 1.40 7.67 -2.39 -0.02 1.38 16 Total: -1.00 -85.53 394.59 0.08 -85.45 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -1.32 Total: 43.89 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.49 Total: -13.29 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -6.02 Total: -104.39 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.10 Total: -52.76 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -85.53 0.08 -85.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456721398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.061 kcal (2) G-P(sol) polarization free energy of solvation -85.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds