Wall clock time and date at job start Wed Apr 1 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47129 * 2 1 4 4 C 1.36874 * 120.00347 * 263.34540 * 3 2 1 5 5 H 1.07997 * 119.99793 * 196.75165 * 4 3 2 6 6 C 1.39011 * 119.99735 * 16.75677 * 4 3 2 7 7 N 1.31395 * 120.00260 * 19.39600 * 6 4 3 8 8 Si 1.86804 * 119.99796 * 199.39902 * 6 4 3 9 9 H 1.48501 * 109.47237 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46999 * 119.99933 * 8 6 4 11 11 H 1.48498 * 109.46976 * 239.99865 * 8 6 4 12 12 C 1.34779 * 119.99730 * 83.34688 * 3 2 1 13 13 O 1.21718 * 119.99979 * 175.50738 * 12 3 2 14 14 C 1.46824 * 120.00094 * 355.50713 * 12 3 2 15 15 C 1.43198 * 120.00120 * 250.77602 * 14 12 3 16 16 N 4.70495 * 64.68137 * 56.46238 * 2 1 3 17 17 C 1.38180 * 120.00024 * 70.77683 * 14 12 3 18 18 C 1.41821 * 119.99851 * 7.18394 * 17 14 12 19 19 C 1.46967 * 127.08264 * 17.33907 * 18 17 14 20 20 C 1.34332 * 106.38544 * 179.73689 * 19 18 17 21 21 C 1.50695 * 125.38051 * 180.02562 * 20 19 18 22 22 N 1.36530 * 109.23859 * 0.02562 * 20 19 18 23 23 C 1.46499 * 124.77553 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47192 * 90.02238 * 23 22 20 25 25 O 1.42899 * 109.47027 * 179.97438 * 24 23 22 26 26 C 1.42906 * 113.99512 * 180.02562 * 25 24 23 27 27 C 1.34591 * 110.45527 * 359.97438 * 22 20 19 28 28 C 1.50703 * 125.95900 * 180.02562 * 27 22 20 29 29 H 1.09000 * 109.46915 * 299.99700 * 1 2 3 30 30 H 1.08998 * 109.47091 * 59.99318 * 1 2 3 31 31 H 1.08994 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46915 * 240.00300 * 2 1 3 33 33 H 1.09002 * 109.47100 * 119.99927 * 2 1 3 34 34 H 0.96995 * 119.99793 * 180.02562 * 7 6 4 35 35 H 1.07996 * 120.00275 * 187.18898 * 17 14 12 36 36 H 1.08001 * 126.80904 * 359.70840 * 19 18 17 37 37 H 1.09002 * 109.47165 * 89.97939 * 21 20 19 38 38 H 1.09001 * 109.47311 * 209.98148 * 21 20 19 39 39 H 1.09002 * 109.47347 * 329.98183 * 21 20 19 40 40 H 1.08998 * 109.47761 * 210.02881 * 23 22 20 41 41 H 1.09003 * 109.47014 * 330.02945 * 23 22 20 42 42 H 1.08998 * 109.47293 * 300.00930 * 24 23 22 43 43 H 1.09003 * 109.46563 * 60.00431 * 24 23 22 44 44 H 1.09001 * 109.46958 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47100 * 300.00385 * 26 25 24 46 46 H 1.08998 * 109.47240 * 60.00561 * 26 25 24 47 47 H 1.09002 * 109.47046 * 270.00083 * 28 27 22 48 48 H 1.08997 * 109.46859 * 30.00261 * 28 27 22 49 49 H 1.09001 * 109.46793 * 150.00400 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3760 1.9808 -1.1773 5 1 2.9792 2.8766 -1.1657 6 6 1.9628 1.4366 -2.3879 7 7 0.9461 0.6049 -2.4215 8 14 2.8530 1.8878 -3.9670 9 1 3.9543 2.8358 -3.6610 10 1 3.4138 0.6604 -4.5871 11 1 1.8983 2.5261 -4.9084 12 6 2.1155 2.0616 1.1594 13 8 2.5974 3.1793 1.1706 14 6 1.6399 1.4547 2.4089 15 6 0.4567 1.9538 3.0424 16 7 -0.4821 2.3497 3.5450 17 6 2.3342 0.4018 2.9735 18 6 3.5848 0.0065 2.4339 19 6 4.4495 0.7865 1.5374 20 6 5.5266 0.0226 1.2905 21 6 6.6903 0.4119 0.4158 22 7 5.4003 -1.1621 1.9573 23 6 6.3835 -2.2476 1.9256 24 6 7.3941 -2.0538 3.0580 25 8 8.3527 -3.1130 3.0274 26 6 9.3472 -3.0265 4.0500 27 6 4.2455 -1.1924 2.6479 28 6 3.7565 -2.3316 3.5048 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6581 0.2250 -3.2662 35 1 1.9245 -0.1201 3.8256 36 1 4.2570 1.7772 1.1530 37 1 7.4466 0.9137 1.0193 38 1 7.1203 -0.4821 -0.0359 39 1 6.3458 1.0855 -0.3688 40 1 5.8744 -3.2030 2.0526 41 1 6.9046 -2.2381 0.9682 42 1 7.9033 -1.0984 2.9310 43 1 6.8730 -2.0633 4.0154 44 1 10.0366 -3.8658 3.9583 45 1 9.8973 -2.0916 3.9437 46 1 8.8664 -3.0561 5.0278 47 1 3.1624 -3.0142 2.8972 48 1 4.6106 -2.8654 3.9214 49 1 3.1427 -1.9389 4.3155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490638388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:23 Heat of formation + Delta-G solvation = 31.331308 kcal Electronic energy + Delta-G solvation = -31622.325202 eV Core-core repulsion = 27552.148528 eV Total energy + Delta-G solvation = -4070.176674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.29339 -38.85597 -38.22032 -36.03405 -34.92850 -34.38070 -32.90159 -32.05465 -31.26393 -29.32348 -29.16667 -28.60256 -26.54099 -25.51837 -24.58967 -23.51603 -22.46672 -21.86541 -20.32884 -19.87498 -18.02547 -17.13999 -16.80564 -16.49487 -16.42751 -16.05493 -15.75836 -15.22036 -14.68204 -14.49744 -14.22260 -14.10710 -13.70913 -13.44122 -13.22327 -13.09870 -12.97772 -12.83744 -12.67144 -12.61014 -12.48812 -12.30397 -12.14204 -11.91550 -11.87268 -11.82783 -11.74731 -11.52582 -11.39995 -11.12123 -11.08572 -10.88502 -10.66869 -10.34129 -10.14075 -10.13432 -9.89271 -9.43957 -8.88008 -8.39569 -7.91781 -7.59951 -7.16441 -6.28172 -3.78679 1.09734 2.48009 2.67735 3.09923 3.22026 3.27458 3.33021 3.38314 3.63067 3.81797 4.05997 4.21762 4.40387 4.58972 4.66678 4.78116 4.89751 4.92168 4.94255 4.97573 5.05369 5.14855 5.16726 5.24907 5.27108 5.33605 5.41785 5.46399 5.55491 5.74456 5.77180 5.88444 5.90362 6.13704 6.29872 6.40700 6.50537 6.62485 6.68101 6.75074 6.79831 6.84487 6.92981 7.29339 7.34726 7.43468 7.49915 7.51638 7.92975 8.08514 8.16676 8.56565 9.20170 9.45901 10.03064 10.68164 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004160 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.948031 B = 6728.916908 C = 8372.457589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 N -0.417 5.417 4 C -0.297 4.297 5 H 0.104 0.896 6 C 0.031 3.969 7 N -0.863 5.863 8 Si 0.920 3.080 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.500 3.500 13 O -0.590 6.590 14 C -0.102 4.102 15 C 0.281 3.719 16 N -0.449 5.449 17 C 0.031 3.969 18 C -0.170 4.170 19 C -0.130 4.130 20 C -0.001 4.001 21 C -0.082 4.082 22 N -0.432 5.432 23 C 0.103 3.897 24 C 0.047 3.953 25 O -0.390 6.390 26 C 0.033 3.967 27 C 0.061 3.939 28 C -0.089 4.089 29 H 0.019 0.981 30 H 0.103 0.897 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.124 0.876 36 H 0.166 0.834 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.945 -12.790 9.054 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 N -0.133 5.133 4 C -0.425 4.425 5 H 0.122 0.878 6 C -0.172 4.172 7 N -0.502 5.502 8 Si 0.746 3.254 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.288 3.712 13 O -0.477 6.477 14 C -0.109 4.109 15 C -0.032 4.032 16 N -0.126 5.126 17 C 0.006 3.994 18 C -0.177 4.177 19 C -0.153 4.153 20 C -0.107 4.107 21 C -0.139 4.139 22 N -0.110 5.110 23 C -0.019 4.019 24 C -0.030 4.030 25 O -0.308 6.308 26 C -0.063 4.063 27 C -0.054 4.054 28 C -0.146 4.146 29 H 0.038 0.962 30 H 0.122 0.878 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.183 0.817 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.908 -12.134 9.435 20.072 hybrid contribution 0.567 0.003 -0.797 0.978 sum 13.475 -12.131 8.638 20.084 Atomic orbital electron populations 1.22315 0.96924 0.99614 1.02543 1.21321 0.94205 0.83333 1.00497 1.43580 1.53975 1.10960 1.04764 1.19737 1.29633 1.11304 0.81807 0.87828 1.25261 0.95476 0.97239 0.99256 1.70053 1.22143 1.31453 1.26601 0.85967 0.79715 0.78296 0.81377 1.19163 1.20761 1.20946 1.17056 0.85598 0.85600 0.82973 1.90666 1.50553 1.20213 1.86239 1.18294 0.92738 1.01003 0.98904 1.25444 0.92392 0.92900 0.92484 1.81103 1.11419 1.09417 1.10676 1.20806 0.90939 0.91906 0.95768 1.18326 0.96718 0.95288 1.07354 1.22620 0.92618 1.01049 0.98964 1.20138 1.00607 0.86619 1.03291 1.20307 0.94088 1.01494 0.98024 1.43200 1.15720 1.13896 1.38142 1.21499 0.89998 0.90273 1.00157 1.22840 0.90619 0.90832 0.98729 1.87803 1.41184 1.48132 1.53689 1.22770 0.90955 1.02169 0.90417 1.20689 0.87818 0.97404 0.99470 1.20410 1.01239 0.94698 0.98274 0.96207 0.87833 0.94913 0.89443 0.93857 0.92376 0.85778 0.81675 0.91757 0.92291 0.89550 0.88501 0.88275 0.92332 0.92544 0.89313 0.93817 0.93868 0.90368 0.91798 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.60 37.16 0.36 -3.05 16 2 C 0.13 2.86 4.87 -4.04 -0.02 2.84 16 3 N -0.42 -10.17 1.99 -116.24 -0.23 -10.41 16 4 C -0.30 -7.80 9.37 -15.01 -0.14 -7.94 16 5 H 0.10 2.86 7.33 -52.49 -0.38 2.48 16 6 C 0.03 0.77 4.93 -17.45 -0.09 0.68 16 7 N -0.86 -21.55 8.32 55.50 0.46 -21.09 16 8 Si 0.92 19.76 29.60 -169.99 -5.03 14.72 16 9 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.50 12.15 3.88 -12.79 -0.05 12.10 16 13 O -0.59 -16.29 15.71 5.17 0.08 -16.21 16 14 C -0.10 -2.08 4.00 -104.52 -0.42 -2.50 16 15 C 0.28 5.92 14.71 -22.47 -0.33 5.59 16 16 N -0.45 -9.74 18.54 41.84 0.78 -8.96 16 17 C 0.03 0.50 8.24 -38.23 -0.32 0.19 16 18 C -0.17 -2.76 4.34 -104.88 -0.46 -3.21 16 19 C -0.13 -2.37 8.91 -37.43 -0.33 -2.71 16 20 C 0.00 -0.02 6.84 -81.88 -0.56 -0.58 16 21 C -0.08 -1.01 10.04 36.00 0.36 -0.65 16 22 N -0.43 -5.40 2.68 -107.49 -0.29 -5.69 16 23 C 0.10 0.97 5.73 -4.04 -0.02 0.94 16 24 C 0.05 0.41 6.26 37.16 0.23 0.64 16 25 O -0.39 -3.46 10.70 -35.23 -0.38 -3.83 16 26 C 0.03 0.20 11.01 101.05 1.11 1.32 16 27 C 0.06 0.79 6.95 -81.27 -0.56 0.23 16 28 C -0.09 -0.79 9.63 36.01 0.35 -0.45 16 29 H 0.02 0.42 6.75 -51.93 -0.35 0.07 16 30 H 0.10 2.57 5.81 -51.93 -0.30 2.27 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.07 6.25 -51.93 -0.32 1.75 16 33 H 0.04 0.86 4.68 -51.93 -0.24 0.62 16 34 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 35 H 0.12 1.58 7.52 -52.49 -0.39 1.18 16 36 H 0.17 3.64 5.22 -52.49 -0.27 3.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 0.80 7.49 -51.93 -0.39 0.41 16 41 H 0.10 0.90 6.88 -51.93 -0.36 0.54 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.46 7.59 -51.93 -0.39 0.07 16 49 H 0.08 0.66 7.51 -51.93 -0.39 0.27 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -31.58 399.72 -6.57 -38.16 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.10 Total: 3.82 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.89 Total: 3.46 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.72 Total: -46.15 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.30 Total: -20.04 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.58 -6.57 -38.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490638388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.488 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds