Wall clock time and date at job start Wed Apr 1 2020 05:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47129 * 2 1 4 4 C 1.36874 * 120.00347 * 263.34540 * 3 2 1 5 5 H 1.07997 * 119.99793 * 196.75165 * 4 3 2 6 6 C 1.39011 * 119.99735 * 16.75677 * 4 3 2 7 7 N 1.31395 * 120.00260 * 19.39600 * 6 4 3 8 8 Si 1.86804 * 119.99796 * 199.39902 * 6 4 3 9 9 H 1.48501 * 109.47237 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46999 * 119.99933 * 8 6 4 11 11 H 1.48498 * 109.46976 * 239.99865 * 8 6 4 12 12 C 1.34779 * 119.99730 * 83.34688 * 3 2 1 13 13 O 1.21718 * 119.99979 * 175.50738 * 12 3 2 14 14 C 1.46824 * 120.00094 * 355.50713 * 12 3 2 15 15 C 1.43198 * 120.00120 * 250.77602 * 14 12 3 16 16 N 4.70495 * 64.68137 * 56.46238 * 2 1 3 17 17 C 1.38180 * 120.00024 * 70.77683 * 14 12 3 18 18 C 1.41821 * 119.99851 * 7.18394 * 17 14 12 19 19 C 1.46967 * 127.08264 * 17.33907 * 18 17 14 20 20 C 1.34332 * 106.38544 * 179.73689 * 19 18 17 21 21 C 1.50695 * 125.38051 * 180.02562 * 20 19 18 22 22 N 1.36530 * 109.23859 * 0.02562 * 20 19 18 23 23 C 1.46499 * 124.77553 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47192 * 90.02238 * 23 22 20 25 25 O 1.42899 * 109.47027 * 179.97438 * 24 23 22 26 26 C 1.42906 * 113.99512 * 180.02562 * 25 24 23 27 27 C 1.34591 * 110.45527 * 359.97438 * 22 20 19 28 28 C 1.50703 * 125.95900 * 180.02562 * 27 22 20 29 29 H 1.09000 * 109.46915 * 299.99700 * 1 2 3 30 30 H 1.08998 * 109.47091 * 59.99318 * 1 2 3 31 31 H 1.08994 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46915 * 240.00300 * 2 1 3 33 33 H 1.09002 * 109.47100 * 119.99927 * 2 1 3 34 34 H 0.96995 * 119.99793 * 180.02562 * 7 6 4 35 35 H 1.07996 * 120.00275 * 187.18898 * 17 14 12 36 36 H 1.08001 * 126.80904 * 359.70840 * 19 18 17 37 37 H 1.09002 * 109.47165 * 89.97939 * 21 20 19 38 38 H 1.09001 * 109.47311 * 209.98148 * 21 20 19 39 39 H 1.09002 * 109.47347 * 329.98183 * 21 20 19 40 40 H 1.08998 * 109.47761 * 210.02881 * 23 22 20 41 41 H 1.09003 * 109.47014 * 330.02945 * 23 22 20 42 42 H 1.08998 * 109.47293 * 300.00930 * 24 23 22 43 43 H 1.09003 * 109.46563 * 60.00431 * 24 23 22 44 44 H 1.09001 * 109.46958 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47100 * 300.00385 * 26 25 24 46 46 H 1.08998 * 109.47240 * 60.00561 * 26 25 24 47 47 H 1.09002 * 109.47046 * 270.00083 * 28 27 22 48 48 H 1.08997 * 109.46859 * 30.00261 * 28 27 22 49 49 H 1.09001 * 109.46793 * 150.00400 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3760 1.9808 -1.1773 5 1 2.9792 2.8766 -1.1657 6 6 1.9628 1.4366 -2.3879 7 7 0.9461 0.6049 -2.4215 8 14 2.8530 1.8878 -3.9670 9 1 3.9543 2.8358 -3.6610 10 1 3.4138 0.6604 -4.5871 11 1 1.8983 2.5261 -4.9084 12 6 2.1155 2.0616 1.1594 13 8 2.5974 3.1793 1.1706 14 6 1.6399 1.4547 2.4089 15 6 0.4567 1.9538 3.0424 16 7 -0.4821 2.3497 3.5450 17 6 2.3342 0.4018 2.9735 18 6 3.5848 0.0065 2.4339 19 6 4.4495 0.7865 1.5374 20 6 5.5266 0.0226 1.2905 21 6 6.6903 0.4119 0.4158 22 7 5.4003 -1.1621 1.9573 23 6 6.3835 -2.2476 1.9256 24 6 7.3941 -2.0538 3.0580 25 8 8.3527 -3.1130 3.0274 26 6 9.3472 -3.0265 4.0500 27 6 4.2455 -1.1924 2.6479 28 6 3.7565 -2.3316 3.5048 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6581 0.2250 -3.2662 35 1 1.9245 -0.1201 3.8256 36 1 4.2570 1.7772 1.1530 37 1 7.4466 0.9137 1.0193 38 1 7.1203 -0.4821 -0.0359 39 1 6.3458 1.0855 -0.3688 40 1 5.8744 -3.2030 2.0526 41 1 6.9046 -2.2381 0.9682 42 1 7.9033 -1.0984 2.9310 43 1 6.8730 -2.0633 4.0154 44 1 10.0366 -3.8658 3.9583 45 1 9.8973 -2.0916 3.9437 46 1 8.8664 -3.0561 5.0278 47 1 3.1624 -3.0142 2.8972 48 1 4.6106 -2.8654 3.9214 49 1 3.1427 -1.9389 4.3155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490638388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:21 Heat of formation + Delta-G solvation = 13.278559 kcal Electronic energy + Delta-G solvation = -31623.108028 eV Core-core repulsion = 27552.148528 eV Total energy + Delta-G solvation = -4070.959500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.45247 -40.55522 -38.87206 -37.64594 -36.83630 -35.65856 -33.94127 -33.61732 -32.71101 -31.13008 -30.06914 -29.57182 -27.39462 -26.91789 -26.08661 -24.42024 -23.92094 -23.27542 -21.98919 -21.08390 -19.25263 -18.69260 -18.29272 -17.80543 -17.19773 -17.07324 -16.87484 -16.47466 -16.05016 -16.00194 -15.38445 -15.34662 -15.15446 -14.71737 -14.56162 -14.48376 -14.34121 -14.08033 -13.97245 -13.81723 -13.65696 -13.52350 -13.36955 -13.30670 -13.25052 -12.91655 -12.81816 -12.65459 -12.57116 -12.49433 -12.40895 -12.21458 -12.17701 -12.09624 -11.98580 -11.61516 -10.94841 -10.72276 -10.71216 -10.26745 -9.53997 -9.12964 -8.41731 -8.19616 -5.78295 -0.24332 1.34711 1.36729 1.45765 1.56962 1.61290 1.71557 1.99113 2.10601 2.34114 2.60746 2.93633 3.05929 3.24559 3.46238 3.71923 3.84875 3.88436 3.95393 4.09717 4.20827 4.26301 4.37272 4.47899 4.49930 4.54626 4.56627 4.64675 4.67210 4.75883 4.83402 4.86933 4.87493 4.92204 5.02027 5.06699 5.09270 5.12783 5.21449 5.23713 5.42006 5.50133 5.54085 5.56634 6.00413 6.05789 6.07109 6.19444 6.23334 6.43534 6.55330 6.67240 7.28080 7.59210 8.17159 8.75086 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004160 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.948031 B = 6728.916908 C = 8372.457589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.142 3.858 3 N -0.423 5.423 4 C -0.332 4.332 5 H 0.072 0.928 6 C 0.004 3.996 7 N -0.872 5.872 8 Si 0.978 3.022 9 H -0.275 1.275 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.643 6.643 14 C -0.168 4.168 15 C 0.293 3.707 16 N -0.479 5.479 17 C 0.092 3.908 18 C -0.221 4.221 19 C -0.168 4.168 20 C 0.001 3.999 21 C -0.080 4.080 22 N -0.423 5.423 23 C 0.099 3.901 24 C 0.054 3.946 25 O -0.404 6.404 26 C 0.027 3.973 27 C 0.110 3.890 28 C -0.095 4.095 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.271 0.729 35 H 0.173 0.827 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.641 -17.244 10.448 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 N -0.138 5.138 4 C -0.460 4.460 5 H 0.090 0.910 6 C -0.198 4.198 7 N -0.511 5.511 8 Si 0.803 3.197 9 H -0.200 1.200 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.295 3.705 13 O -0.532 6.532 14 C -0.176 4.176 15 C -0.019 4.019 16 N -0.157 5.157 17 C 0.068 3.932 18 C -0.228 4.228 19 C -0.191 4.191 20 C -0.106 4.106 21 C -0.138 4.138 22 N -0.099 5.099 23 C -0.022 4.022 24 C -0.024 4.024 25 O -0.322 6.322 26 C -0.069 4.069 27 C -0.008 4.008 28 C -0.152 4.152 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.190 0.810 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.120 0.880 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.610 -16.627 10.824 24.639 hybrid contribution 0.337 1.199 -1.175 1.712 sum 14.947 -15.428 9.649 23.549 Atomic orbital electron populations 1.22166 0.96727 1.00769 1.00777 1.21244 0.94151 0.82132 1.00514 1.43626 1.54064 1.11797 1.04332 1.19564 1.31272 1.11589 0.83624 0.91036 1.25865 0.95703 0.97074 1.01165 1.70151 1.22035 1.31453 1.27423 0.85105 0.78372 0.78346 0.77875 1.19955 1.19054 1.20848 1.17531 0.83945 0.84914 0.84119 1.90594 1.52539 1.22777 1.87332 1.17782 0.95172 1.05267 0.99429 1.25511 0.92079 0.92285 0.91990 1.81084 1.12374 1.10409 1.11854 1.21318 0.89122 0.88361 0.94358 1.18462 0.97531 0.97151 1.09648 1.22322 0.95325 1.00300 1.01143 1.20274 1.00185 0.87079 1.03017 1.20337 0.93711 1.02263 0.97471 1.43447 1.16183 1.13636 1.36653 1.21779 0.89765 0.89631 1.01050 1.22708 0.90511 0.90640 0.98542 1.87776 1.41661 1.48045 1.54765 1.22955 0.90735 1.02978 0.90238 1.21391 0.86157 0.96797 0.96471 1.20731 1.02898 0.93317 0.98256 0.96562 0.90915 0.92150 0.91312 0.91482 0.91917 0.81011 0.86485 0.90086 0.89843 0.91819 0.86186 0.87771 0.92981 0.91654 0.88013 0.93548 0.92903 0.88563 0.89027 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 9.60 71.98 0.69 -5.73 16 2 C 0.14 6.35 4.87 86.38 0.42 6.77 16 3 N -0.42 -21.79 1.99 -639.87 -1.27 -23.06 16 4 C -0.33 -18.66 9.37 84.09 0.79 -17.87 16 5 H 0.07 4.36 7.33 -2.91 -0.02 4.34 16 6 C 0.00 0.22 4.93 84.94 0.42 0.64 16 7 N -0.87 -44.40 8.32 21.68 0.18 -44.22 16 8 Si 0.98 41.74 29.60 68.60 2.03 43.77 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.51 26.19 3.88 86.49 0.34 26.53 16 13 O -0.64 -38.77 15.71 -4.41 -0.07 -38.84 16 14 C -0.17 -7.05 4.00 -19.80 -0.08 -7.13 16 15 C 0.29 12.65 14.71 88.33 1.30 13.95 16 16 N -0.48 -21.26 18.54 19.00 0.35 -20.90 16 17 C 0.09 2.87 8.24 23.14 0.19 3.06 16 18 C -0.22 -6.83 4.34 -20.03 -0.09 -6.91 16 19 C -0.17 -6.32 8.91 23.67 0.21 -6.11 16 20 C 0.00 0.02 6.84 40.93 0.28 0.30 16 21 C -0.08 -1.96 10.04 71.23 0.72 -1.25 16 22 N -0.42 -9.17 2.68 -494.00 -1.33 -10.49 16 23 C 0.10 1.41 5.73 86.38 0.50 1.90 16 24 C 0.05 0.70 6.26 71.98 0.45 1.15 16 25 O -0.40 -5.61 10.70 -148.98 -1.59 -7.20 16 26 C 0.03 0.24 11.01 113.37 1.25 1.49 16 27 C 0.11 2.40 6.95 42.21 0.29 2.69 16 28 C -0.10 -1.07 9.63 71.24 0.69 -0.39 16 29 H 0.02 0.69 6.75 -2.39 -0.02 0.67 16 30 H 0.07 3.68 5.81 -2.39 -0.01 3.67 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 3.29 6.25 -2.39 -0.01 3.28 16 33 H 0.07 2.60 4.68 -2.39 -0.01 2.59 16 34 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 35 H 0.17 3.58 7.52 -2.91 -0.02 3.56 16 36 H 0.12 5.67 5.22 -2.91 -0.02 5.65 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.59 6.92 -2.39 -0.02 1.58 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.12 1.26 7.49 -2.39 -0.02 1.24 16 41 H 0.10 1.46 6.88 -2.39 -0.02 1.44 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.09 0.64 7.59 -2.39 -0.02 0.62 16 49 H 0.10 0.90 7.51 -2.39 -0.02 0.88 16 Total: -1.00 -76.77 399.72 7.63 -69.14 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.97 Total: 18.72 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 8.36 Total: 13.09 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -2.07 Total: -98.69 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.66 Total: -46.04 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -76.77 7.63 -69.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490638388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.422 kcal (2) G-P(sol) polarization free energy of solvation -76.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds