Wall clock time and date at job start Wed Apr 1 2020 04:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46513 * 2 1 4 4 C 1.46499 * 119.99971 * 270.00037 * 3 2 1 5 5 C 1.50706 * 109.47119 * 270.00200 * 4 3 2 6 6 H 1.07997 * 119.99651 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99828 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00279 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46911 * 60.00079 * 9 7 5 11 11 H 1.48502 * 109.47158 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46978 * 300.00021 * 9 7 5 13 13 C 1.34775 * 119.99851 * 90.00823 * 3 2 1 14 14 O 1.21283 * 119.99925 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00069 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.47138 * 180.02562 * 15 13 3 17 17 C 1.39671 * 119.99620 * 180.28206 * 16 15 13 18 18 C 1.38955 * 120.00490 * 359.71736 * 17 16 15 19 19 C 1.38125 * 119.74125 * 179.97438 * 18 17 16 20 20 C 1.37932 * 120.30531 * 0.02562 * 19 18 17 21 21 C 1.39664 * 120.44159 * 0.02562 * 20 19 18 22 22 C 1.38458 * 119.08839 * 359.70443 * 21 20 19 23 23 C 1.51214 * 108.58631 * 179.81983 * 22 21 20 24 24 C 1.53736 * 104.56934 * 0.38179 * 23 22 21 25 25 N 1.39847 * 129.29114 * 179.97438 * 21 20 19 26 26 C 1.34774 * 124.98061 * 359.97068 * 25 21 20 27 27 C 1.50703 * 119.99912 * 179.97438 * 26 25 21 28 28 O 1.21290 * 120.00138 * 359.97438 * 26 25 21 29 29 H 1.09000 * 109.47409 * 299.99518 * 1 2 3 30 30 H 1.09003 * 109.47592 * 60.00092 * 1 2 3 31 31 H 1.09005 * 109.46812 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46776 * 240.00838 * 2 1 3 33 33 H 1.08991 * 109.47255 * 120.00096 * 2 1 3 34 34 H 1.08998 * 109.47138 * 30.00322 * 4 3 2 35 35 H 1.08996 * 109.46665 * 150.00661 * 4 3 2 36 36 H 0.97006 * 120.00308 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46601 * 60.00324 * 15 13 3 38 38 H 1.08998 * 109.47035 * 300.00831 * 15 13 3 39 39 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 40 40 H 1.08000 * 120.13088 * 359.96527 * 18 17 16 41 41 H 1.07995 * 119.84802 * 179.97438 * 19 18 17 42 42 H 1.07998 * 119.77188 * 179.97438 * 20 19 18 43 43 H 1.09005 * 110.60575 * 241.51482 * 23 22 21 44 44 H 1.08996 * 110.22003 * 119.06276 * 23 22 21 45 45 H 1.09000 * 110.30064 * 240.84480 * 24 23 22 46 46 H 1.09003 * 110.38268 * 118.74610 * 24 23 22 47 47 H 1.08998 * 109.47325 * 359.97438 * 27 26 25 48 48 H 1.08997 * 109.46923 * 120.00120 * 27 26 25 49 49 H 1.09001 * 109.47005 * 239.99955 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3425 1.2305 -1.0962 7 6 4.1491 2.3908 -2.8775 8 7 3.3491 3.1268 -3.6176 9 14 5.9132 2.0968 -3.4172 10 1 6.1399 0.6401 -3.5956 11 1 6.1606 2.7970 -4.7032 12 1 6.8410 2.6191 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3083 2.2039 3.5858 17 6 2.1584 1.7630 4.9026 18 6 1.7031 0.4750 5.1566 19 6 1.5573 0.0445 6.4609 20 6 1.8610 0.8869 7.5100 21 6 2.3184 2.1838 7.2664 22 6 2.4686 2.6100 5.9577 23 6 2.9673 4.0375 5.9698 24 6 3.0988 4.3885 7.4608 25 7 2.6760 3.1825 8.1778 26 6 2.6369 3.0547 9.5189 27 6 3.0494 4.2071 10.3980 28 8 2.2696 2.0121 10.0183 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0283 35 1 2.0953 3.1411 -1.1383 36 1 3.6753 3.5179 -4.4432 37 1 2.6215 0.4186 2.5301 38 1 0.9434 1.0123 2.5299 39 1 2.6265 3.1030 3.4086 40 1 1.4639 -0.1868 4.3373 41 1 1.2032 -0.9561 6.6602 42 1 1.7434 0.5415 8.5264 43 1 2.2489 4.6989 5.4854 44 1 3.9373 4.1019 5.4769 45 1 2.4470 5.2254 7.7112 46 1 4.1336 4.6299 7.7041 47 1 3.3462 5.0510 9.7753 48 1 2.2117 4.4991 11.0311 49 1 3.8893 3.9045 11.0234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547386012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:54 Heat of formation + Delta-G solvation = -33.204043 kcal Electronic energy + Delta-G solvation = -29841.600070 eV Core-core repulsion = 25768.624933 eV Total energy + Delta-G solvation = -4072.975137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29705 -39.53592 -38.82525 -36.91403 -35.57307 -34.80507 -32.88346 -32.28100 -30.76288 -30.20008 -29.32531 -28.74733 -27.51015 -25.91545 -23.73265 -23.14243 -22.96741 -22.12273 -21.51437 -19.51439 -18.67232 -17.75564 -16.69921 -16.66393 -16.61345 -16.43260 -16.02423 -15.60337 -15.30033 -14.94994 -14.92595 -14.81915 -14.24290 -13.95457 -13.67554 -13.51685 -13.34739 -13.06213 -12.91286 -12.87229 -12.80564 -12.64052 -12.45697 -12.12594 -12.08407 -12.02011 -11.70124 -11.53918 -11.26505 -11.20311 -10.98773 -10.84837 -10.61303 -10.55422 -10.20348 -10.14727 -9.79194 -9.72939 -9.13546 -8.49224 -7.98955 -7.81330 -7.32853 -6.10435 -4.15611 1.22023 1.61484 2.38091 2.50382 3.19540 3.27995 3.30079 3.32559 3.36841 3.85243 3.91829 4.06125 4.29416 4.39440 4.53041 4.73173 4.76180 4.85676 4.98138 4.98896 5.14095 5.16726 5.20886 5.24233 5.33043 5.35617 5.44083 5.45237 5.53110 5.56285 5.56900 5.62866 5.71626 5.79665 5.96459 6.09943 6.15793 6.25110 6.36470 6.41449 6.62053 6.81164 6.95680 7.15272 7.31558 7.35769 7.43014 7.71882 7.82153 7.85048 8.15479 8.26986 8.77204 8.92862 9.49580 10.97612 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002249 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.754442 B =12444.349840 C =13454.406476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.501 3.499 14 O -0.540 6.540 15 C 0.103 3.897 16 N -0.728 5.728 17 C 0.266 3.734 18 C -0.221 4.221 19 C -0.047 4.047 20 C -0.193 4.193 21 C 0.186 3.814 22 C -0.217 4.217 23 C -0.077 4.077 24 C 0.103 3.897 25 N -0.555 5.555 26 C 0.519 3.481 27 C -0.170 4.170 28 O -0.525 6.525 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.411 0.589 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -1.504 22.213 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.286 3.714 14 O -0.417 6.417 15 C -0.025 4.025 16 N -0.359 5.359 17 C 0.160 3.840 18 C -0.244 4.244 19 C -0.066 4.066 20 C -0.215 4.215 21 C 0.090 3.910 22 C -0.224 4.224 23 C -0.115 4.115 24 C -0.019 4.019 25 N -0.279 5.279 26 C 0.310 3.690 27 C -0.229 4.229 28 O -0.400 6.400 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.250 0.750 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.117 0.883 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.155 -1.394 22.259 22.686 hybrid contribution 1.108 0.170 -0.606 1.274 sum -3.046 -1.224 21.653 21.900 Atomic orbital electron populations 1.22229 0.96529 1.01661 1.02429 1.21489 0.93702 0.83927 1.02998 1.48231 1.63104 1.13361 1.07550 1.19308 0.96416 0.93633 0.77865 1.21369 0.96826 1.32128 1.06400 0.92507 1.24932 0.97905 0.94869 0.96352 1.69918 1.35740 1.33247 1.14376 0.86551 0.84684 0.78305 0.77846 1.20209 1.21145 1.20188 1.20168 0.78926 0.87067 0.85221 1.90657 1.46215 1.18076 1.86796 1.21206 1.01621 0.93693 0.85948 1.44463 1.72920 1.17373 1.01103 1.17011 0.92161 0.91858 0.83000 1.20569 1.11213 0.95159 0.97480 1.20624 0.95928 0.98629 0.91421 1.20626 1.08387 0.92060 1.00443 1.18014 0.95700 0.89666 0.87571 1.19205 1.14540 0.97205 0.91492 1.20902 1.02566 0.93349 0.94664 1.22164 1.00874 0.86949 0.91912 1.46037 1.62627 1.13979 1.05230 1.20814 0.77278 0.90025 0.80866 1.21900 1.04481 0.96483 1.00026 1.90706 1.45967 1.30083 1.73269 0.93006 0.91934 0.91932 0.89608 0.91583 0.94790 0.93839 0.92599 0.89691 0.89718 0.75044 0.85684 0.85693 0.85028 0.89488 0.89476 0.89853 0.89824 0.90135 0.88288 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.69 2.46 -175.05 -0.43 -12.12 16 4 C 0.25 6.19 5.16 -5.19 -0.03 6.16 16 5 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.50 9.69 7.74 -10.98 -0.09 9.60 16 14 O -0.54 -12.64 15.25 5.56 0.08 -12.56 16 15 C 0.10 1.46 3.94 -5.19 -0.02 1.44 16 16 N -0.73 -10.36 5.70 -59.82 -0.34 -10.70 16 17 C 0.27 3.53 6.65 -83.81 -0.56 2.98 16 18 C -0.22 -2.68 9.32 -39.36 -0.37 -3.05 16 19 C -0.05 -0.55 10.01 -39.73 -0.40 -0.94 16 20 C -0.19 -2.56 9.45 -39.16 -0.37 -2.93 16 21 C 0.19 2.43 6.62 -83.59 -0.55 1.87 16 22 C -0.22 -2.73 6.18 -104.08 -0.64 -3.38 16 23 C -0.08 -0.74 6.47 -27.25 -0.18 -0.92 16 24 C 0.10 0.77 5.98 -3.64 -0.02 0.75 16 25 N -0.55 -5.97 3.13 -112.91 -0.35 -6.33 16 26 C 0.52 5.54 7.90 -10.99 -0.09 5.45 16 27 C -0.17 -0.95 10.20 36.01 0.37 -0.58 16 28 O -0.52 -7.56 15.26 5.55 0.08 -7.48 16 29 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.09 1.09 7.20 -51.92 -0.37 0.71 16 38 H 0.08 1.03 6.99 -51.93 -0.36 0.67 16 39 H 0.41 6.29 7.04 -40.82 -0.29 6.01 16 40 H 0.13 1.31 6.73 -52.49 -0.35 0.96 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.85 6.27 -52.49 -0.33 1.52 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 46 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 47 H 0.08 0.28 6.55 -51.93 -0.34 -0.06 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -35.01 399.74 -9.54 -44.55 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.32 Total: 4.45 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -3.00 Total: 3.00 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.39 Total: -54.43 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.17 Total: -20.03 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.01 -9.54 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547386012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.346 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds