Wall clock time and date at job start Wed Apr 1 2020 04:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46513 * 2 1 4 4 C 1.46499 * 119.99971 * 270.00037 * 3 2 1 5 5 C 1.50706 * 109.47119 * 270.00200 * 4 3 2 6 6 H 1.07997 * 119.99651 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99828 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00279 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46911 * 60.00079 * 9 7 5 11 11 H 1.48502 * 109.47158 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46978 * 300.00021 * 9 7 5 13 13 C 1.34775 * 119.99851 * 90.00823 * 3 2 1 14 14 O 1.21283 * 119.99925 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00069 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.47138 * 180.02562 * 15 13 3 17 17 C 1.39671 * 119.99620 * 180.28206 * 16 15 13 18 18 C 1.38955 * 120.00490 * 359.71736 * 17 16 15 19 19 C 1.38125 * 119.74125 * 179.97438 * 18 17 16 20 20 C 1.37932 * 120.30531 * 0.02562 * 19 18 17 21 21 C 1.39664 * 120.44159 * 0.02562 * 20 19 18 22 22 C 1.38458 * 119.08839 * 359.70443 * 21 20 19 23 23 C 1.51214 * 108.58631 * 179.81983 * 22 21 20 24 24 C 1.53736 * 104.56934 * 0.38179 * 23 22 21 25 25 N 1.39847 * 129.29114 * 179.97438 * 21 20 19 26 26 C 1.34774 * 124.98061 * 359.97068 * 25 21 20 27 27 C 1.50703 * 119.99912 * 179.97438 * 26 25 21 28 28 O 1.21290 * 120.00138 * 359.97438 * 26 25 21 29 29 H 1.09000 * 109.47409 * 299.99518 * 1 2 3 30 30 H 1.09003 * 109.47592 * 60.00092 * 1 2 3 31 31 H 1.09005 * 109.46812 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46776 * 240.00838 * 2 1 3 33 33 H 1.08991 * 109.47255 * 120.00096 * 2 1 3 34 34 H 1.08998 * 109.47138 * 30.00322 * 4 3 2 35 35 H 1.08996 * 109.46665 * 150.00661 * 4 3 2 36 36 H 0.97006 * 120.00308 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46601 * 60.00324 * 15 13 3 38 38 H 1.08998 * 109.47035 * 300.00831 * 15 13 3 39 39 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 40 40 H 1.08000 * 120.13088 * 359.96527 * 18 17 16 41 41 H 1.07995 * 119.84802 * 179.97438 * 19 18 17 42 42 H 1.07998 * 119.77188 * 179.97438 * 20 19 18 43 43 H 1.09005 * 110.60575 * 241.51482 * 23 22 21 44 44 H 1.08996 * 110.22003 * 119.06276 * 23 22 21 45 45 H 1.09000 * 110.30064 * 240.84480 * 24 23 22 46 46 H 1.09003 * 110.38268 * 118.74610 * 24 23 22 47 47 H 1.08998 * 109.47325 * 359.97438 * 27 26 25 48 48 H 1.08997 * 109.46923 * 120.00120 * 27 26 25 49 49 H 1.09001 * 109.47005 * 239.99955 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3425 1.2305 -1.0962 7 6 4.1491 2.3908 -2.8775 8 7 3.3491 3.1268 -3.6176 9 14 5.9132 2.0968 -3.4172 10 1 6.1399 0.6401 -3.5956 11 1 6.1606 2.7970 -4.7032 12 1 6.8410 2.6191 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3083 2.2039 3.5858 17 6 2.1584 1.7630 4.9026 18 6 1.7031 0.4750 5.1566 19 6 1.5573 0.0445 6.4609 20 6 1.8610 0.8869 7.5100 21 6 2.3184 2.1838 7.2664 22 6 2.4686 2.6100 5.9577 23 6 2.9673 4.0375 5.9698 24 6 3.0988 4.3885 7.4608 25 7 2.6760 3.1825 8.1778 26 6 2.6369 3.0547 9.5189 27 6 3.0494 4.2071 10.3980 28 8 2.2696 2.0121 10.0183 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0283 35 1 2.0953 3.1411 -1.1383 36 1 3.6753 3.5179 -4.4432 37 1 2.6215 0.4186 2.5301 38 1 0.9434 1.0123 2.5299 39 1 2.6265 3.1030 3.4086 40 1 1.4639 -0.1868 4.3373 41 1 1.2032 -0.9561 6.6602 42 1 1.7434 0.5415 8.5264 43 1 2.2489 4.6989 5.4854 44 1 3.9373 4.1019 5.4769 45 1 2.4470 5.2254 7.7112 46 1 4.1336 4.6299 7.7041 47 1 3.3462 5.0510 9.7753 48 1 2.2117 4.4991 11.0311 49 1 3.8893 3.9045 11.0234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547386012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:52 Heat of formation + Delta-G solvation = -55.671781 kcal Electronic energy + Delta-G solvation = -29842.574344 eV Core-core repulsion = 25768.624933 eV Total energy + Delta-G solvation = -4073.949411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.12748 -40.93732 -39.82879 -37.84385 -37.06285 -35.89415 -34.89937 -33.13932 -31.73402 -31.42948 -30.34976 -29.56974 -28.96389 -27.29865 -24.89413 -24.44666 -24.11873 -23.21064 -22.44707 -20.37982 -20.07633 -18.82311 -18.55968 -17.74478 -17.72570 -17.33985 -17.20136 -16.62543 -16.62082 -16.52245 -15.92994 -15.73455 -15.57264 -14.91723 -14.83708 -14.70947 -14.59041 -14.16482 -14.09582 -13.70816 -13.60672 -13.49673 -13.42912 -13.28579 -13.22262 -13.15091 -13.06231 -12.79313 -12.65337 -12.52622 -12.36435 -12.17068 -12.09723 -11.90968 -11.74683 -11.45333 -11.00453 -10.74505 -10.71416 -10.64646 -9.49648 -8.85286 -8.33758 -8.23063 -6.37626 0.31819 0.64589 1.36802 1.40231 1.47529 1.58932 1.70898 1.76772 2.05897 2.37783 2.64212 2.92880 3.06815 3.38959 3.54185 3.60219 3.83053 4.08947 4.16707 4.17172 4.27874 4.31588 4.36224 4.39898 4.45899 4.50797 4.54541 4.59810 4.65592 4.65928 4.67241 4.93359 4.97731 4.98981 4.99514 5.04253 5.06484 5.20477 5.23764 5.34557 5.41106 5.46779 5.55788 5.67610 5.80472 5.91166 6.04887 6.31676 6.38412 6.64494 6.70839 6.78619 6.93407 7.24177 7.39111 8.83736 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.002249 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.754442 B =12444.349840 C =13454.406476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.492 3.508 14 O -0.591 6.591 15 C 0.120 3.880 16 N -0.735 5.735 17 C 0.251 3.749 18 C -0.223 4.223 19 C -0.045 4.045 20 C -0.212 4.212 21 C 0.167 3.833 22 C -0.228 4.228 23 C -0.080 4.080 24 C 0.102 3.898 25 N -0.558 5.558 26 C 0.509 3.491 27 C -0.160 4.160 28 O -0.573 6.573 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.024 0.976 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.404 0.596 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -2.432 23.529 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.281 3.719 14 O -0.472 6.472 15 C -0.008 4.008 16 N -0.366 5.366 17 C 0.146 3.854 18 C -0.246 4.246 19 C -0.064 4.064 20 C -0.234 4.234 21 C 0.071 3.929 22 C -0.235 4.235 23 C -0.117 4.117 24 C -0.018 4.018 25 N -0.282 5.282 26 C 0.303 3.697 27 C -0.219 4.219 28 O -0.452 6.452 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.241 0.759 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.129 0.871 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.609 -2.355 23.594 23.984 hybrid contribution 0.886 0.454 -0.988 1.403 sum -2.722 -1.901 22.606 22.848 Atomic orbital electron populations 1.22169 0.94460 1.03681 1.01747 1.21839 0.95388 0.81050 1.04378 1.48223 1.63268 1.15209 1.06020 1.18726 0.95318 0.91588 0.80248 1.21663 0.97848 1.32004 1.06541 0.92781 1.25838 1.02267 0.94534 0.96488 1.70039 1.37748 1.34123 1.14822 0.85498 0.79174 0.79000 0.77332 1.18521 1.20478 1.20340 1.21082 0.77558 0.86653 0.86640 1.90627 1.48353 1.20515 1.87692 1.21171 1.03675 0.93257 0.82665 1.44452 1.73629 1.17088 1.01444 1.17234 0.92924 0.92658 0.82584 1.20829 1.10614 0.94958 0.98175 1.20890 0.95159 0.99458 0.90926 1.20742 1.09458 0.92940 1.00298 1.18299 0.95857 0.90226 0.88492 1.19537 1.14188 0.98585 0.91218 1.20994 1.02480 0.91824 0.96442 1.22430 1.03071 0.86366 0.89975 1.46313 1.62142 1.14339 1.05386 1.21824 0.76175 0.90704 0.81037 1.21960 1.05187 0.95081 0.99656 1.90679 1.48190 1.32284 1.74041 0.92024 0.94316 0.88476 0.90688 0.87724 0.95810 0.98389 0.92417 0.87424 0.86903 0.75936 0.83588 0.83262 0.86510 0.89179 0.89448 0.87150 0.87275 0.87474 0.87128 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 2 C 0.10 2.63 5.93 86.38 0.51 3.14 16 3 N -0.60 -23.66 2.46 -826.14 -2.03 -25.68 16 4 C 0.26 13.70 5.16 85.63 0.44 14.14 16 5 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.44 5.46 84.65 0.46 0.91 16 8 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 9 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.49 19.02 7.74 87.66 0.68 19.70 16 14 O -0.59 -28.62 15.25 -3.04 -0.05 -28.66 16 15 C 0.12 3.13 3.94 85.63 0.34 3.47 16 16 N -0.74 -20.17 5.70 -343.18 -1.96 -22.13 16 17 C 0.25 6.36 6.65 38.20 0.25 6.62 16 18 C -0.22 -4.93 9.32 22.41 0.21 -4.72 16 19 C -0.05 -1.00 10.01 22.17 0.22 -0.78 16 20 C -0.21 -5.64 9.45 22.54 0.21 -5.43 16 21 C 0.17 4.31 6.62 38.26 0.25 4.56 16 22 C -0.23 -5.59 6.18 -19.51 -0.12 -5.71 16 23 C -0.08 -1.45 6.47 30.26 0.20 -1.26 16 24 C 0.10 1.30 5.98 86.62 0.52 1.81 16 25 N -0.56 -11.43 3.13 -629.53 -1.97 -13.39 16 26 C 0.51 10.44 7.90 87.66 0.69 11.13 16 27 C -0.16 -1.39 10.20 71.24 0.73 -0.66 16 28 O -0.57 -16.83 15.26 -3.06 -0.05 -16.87 16 29 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 33 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 34 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 35 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 36 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 37 H 0.11 2.36 7.20 -2.38 -0.02 2.35 16 38 H 0.11 2.34 6.99 -2.39 -0.02 2.33 16 39 H 0.40 12.41 7.04 -92.71 -0.65 11.76 16 40 H 0.15 2.52 6.73 -2.91 -0.02 2.50 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.12 3.43 6.27 -2.91 -0.02 3.41 16 43 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 45 H 0.11 0.82 8.05 -2.39 -0.02 0.80 16 46 H 0.11 0.84 8.05 -2.39 -0.02 0.82 16 47 H 0.11 0.34 6.55 -2.39 -0.02 0.33 16 48 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -81.49 399.74 3.16 -78.34 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.32 Total: 23.40 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.57 Total: 13.84 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -5.67 Total: -116.23 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.09 Total: -45.54 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -81.49 3.16 -78.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547386012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.666 kcal (2) G-P(sol) polarization free energy of solvation -81.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds