Wall clock time and date at job start Wed Apr 1 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.46925 * 2 1 4 4 C 1.34783 * 119.99763 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99856 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99938 * 179.97438 * 4 3 2 7 7 O 1.42897 * 109.47095 * 180.02562 * 6 4 3 8 8 C 1.35900 * 117.00288 * 180.02562 * 7 6 4 9 9 C 1.38751 * 120.05239 * 0.02562 * 8 7 6 10 10 C 1.38130 * 119.94324 * 179.97438 * 9 8 7 11 11 C 1.38283 * 120.05429 * 359.74770 * 10 9 8 12 12 C 1.38244 * 120.11200 * 0.50914 * 11 10 9 13 13 C 1.50706 * 119.97491 * 179.76679 * 12 11 10 14 14 N 1.46897 * 109.46900 * 269.72838 * 13 12 11 15 15 C 1.46897 * 110.99772 * 179.97438 * 14 13 12 16 16 C 1.53008 * 109.46968 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.46984 * 54.99967 * 16 15 14 18 18 C 1.47198 * 109.47010 * 294.99683 * 16 15 14 19 19 N 9.05679 * 150.98545 * 66.41794 * 4 1 2 20 20 C 1.53009 * 109.46951 * 175.00093 * 16 15 14 21 21 C 1.50697 * 109.46932 * 185.00147 * 20 16 15 22 22 H 1.07998 * 120.00016 * 359.97438 * 21 20 16 23 23 C 1.37881 * 119.99673 * 179.97438 * 21 20 16 24 24 N 1.31519 * 119.99548 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00076 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47286 * 89.99871 * 25 23 21 27 27 H 1.48500 * 109.46929 * 210.00068 * 25 23 21 28 28 H 1.48496 * 109.47334 * 329.99461 * 25 23 21 29 29 C 1.38166 * 120.05792 * 359.49332 * 12 11 10 30 30 H 1.08997 * 109.47166 * 60.00025 * 1 2 3 31 31 H 1.09000 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47154 * 299.99880 * 1 2 3 33 33 H 1.08996 * 109.46808 * 239.99802 * 2 1 3 34 34 H 1.09002 * 109.47113 * 120.00460 * 2 1 3 35 35 H 0.96998 * 120.00291 * 0.02562 * 3 2 1 36 36 H 1.08996 * 109.47427 * 60.00604 * 6 4 3 37 37 H 1.08997 * 109.47116 * 300.00429 * 6 4 3 38 38 H 1.07996 * 120.02862 * 0.02562 * 9 8 7 39 39 H 1.07998 * 119.96914 * 180.02562 * 10 9 8 40 40 H 1.08001 * 119.94310 * 180.28119 * 11 10 9 41 41 H 1.09000 * 109.46646 * 29.71946 * 13 12 11 42 42 H 1.09000 * 109.47248 * 149.72664 * 13 12 11 43 43 H 1.00899 * 110.99868 * 303.94765 * 14 13 12 44 44 H 1.08993 * 109.47357 * 299.99540 * 15 14 13 45 45 H 1.09004 * 109.47401 * 59.99973 * 15 14 13 46 46 H 1.09000 * 109.46969 * 305.00103 * 20 16 15 47 47 H 1.08996 * 109.47113 * 64.99499 * 20 16 15 48 48 H 0.97001 * 119.99810 * 180.02562 * 24 23 21 49 49 H 1.07999 * 120.03143 * 180.23640 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0483 -0.0001 7 8 5.2747 3.0483 0.0001 8 6 5.8917 4.2591 0.0001 9 6 5.1371 5.4235 0.0006 10 6 5.7667 6.6530 0.0012 11 6 7.1477 6.7240 0.0066 12 6 7.9017 5.5653 0.0008 13 6 9.4066 5.6463 0.0013 14 7 9.8960 5.6731 -1.3835 15 6 11.3623 5.7527 -1.4221 16 6 11.8335 5.7779 -2.8776 17 1 11.3399 6.5940 -3.4052 18 6 11.4957 4.4997 -3.5249 19 7 11.2338 3.5150 -4.0249 20 6 13.3488 5.9860 -2.9195 21 6 13.7961 6.1336 -4.3510 22 1 13.0721 6.0836 -5.1509 23 6 15.1296 6.3326 -4.6395 24 7 15.5200 6.4609 -5.8888 25 14 16.3818 6.4184 -3.2561 26 1 16.9019 5.0563 -2.9740 27 1 17.5043 7.3034 -3.6587 28 1 15.7348 6.9637 -2.0358 29 6 7.2769 4.3330 0.0001 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3879 2.1184 0.0004 36 1 3.4821 3.5626 0.8894 37 1 3.4828 3.5616 -0.8905 38 1 4.0586 5.3686 0.0013 39 1 5.1797 7.5596 0.0020 40 1 7.6380 7.6863 0.0116 41 1 9.7213 6.5545 0.5155 42 1 9.8171 4.7770 0.5150 43 1 9.5633 4.8729 -1.9001 44 1 11.6903 6.6616 -0.9179 45 1 11.7867 4.8843 -0.9182 46 1 13.6073 6.8870 -2.3633 47 1 13.8461 5.1265 -2.4702 48 1 16.4582 6.6005 -6.0919 49 1 7.8664 3.4281 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548788381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:13 Heat of formation + Delta-G solvation = -29.972432 kcal Electronic energy + Delta-G solvation = -27912.992256 eV Core-core repulsion = 23840.157253 eV Total energy + Delta-G solvation = -4072.835004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.78935 -39.81666 -38.14384 -37.23854 -35.80730 -35.20730 -33.66953 -32.20425 -31.79951 -30.92662 -30.35199 -28.31968 -27.37273 -25.04518 -23.53594 -22.84045 -22.52074 -21.78541 -21.37677 -20.77644 -18.47315 -17.57793 -16.94950 -16.90049 -16.78128 -16.64509 -16.17994 -15.97245 -15.67771 -15.28969 -14.96649 -14.64024 -14.28513 -14.19366 -14.02342 -13.65183 -13.32884 -13.16549 -13.09981 -12.94305 -12.71308 -12.59241 -12.45104 -12.32511 -12.17658 -12.08013 -11.84325 -11.63301 -11.43418 -11.38356 -11.16276 -11.12330 -10.84749 -10.32707 -10.29381 -9.98660 -9.78304 -9.68737 -9.31519 -9.11851 -8.59947 -8.44087 -8.39327 -6.08850 -4.09445 1.05969 1.24745 2.06001 2.07740 3.19835 3.28395 3.35847 3.36310 3.48540 3.57317 3.62015 4.05598 4.34238 4.37336 4.39867 4.41836 4.46516 4.54111 4.58129 4.61898 4.72875 4.73970 4.82739 5.05121 5.16053 5.22088 5.25786 5.26984 5.30593 5.35947 5.43415 5.52301 5.52939 5.63275 5.80134 5.83348 6.00982 6.03351 6.17587 6.20573 6.36693 6.42722 6.49467 6.82717 6.95995 6.97095 7.09485 7.14394 7.34350 7.64660 7.65404 8.37046 8.44739 8.94940 9.50909 11.04296 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.001609 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.305284 B =17396.454156 C =18386.557818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.730 5.730 4 C 0.514 3.486 5 O -0.511 6.511 6 C 0.043 3.957 7 O -0.291 6.291 8 C 0.125 3.875 9 C -0.212 4.212 10 C -0.082 4.082 11 C -0.130 4.130 12 C -0.039 4.039 13 C 0.095 3.905 14 N -0.686 5.686 15 C 0.064 3.936 16 C 0.017 3.983 17 H 0.117 0.883 18 C 0.236 3.764 19 N -0.466 5.466 20 C -0.004 4.004 21 C -0.528 4.528 22 H 0.074 0.926 23 C 0.071 3.929 24 N -0.897 5.897 25 Si 0.878 3.122 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.262 1.262 29 C -0.141 4.141 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.342 0.658 44 H 0.093 0.907 45 H 0.036 0.964 46 H 0.039 0.961 47 H 0.019 0.981 48 H 0.264 0.736 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.776 -2.145 18.882 37.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.386 5.386 4 C 0.298 3.702 5 O -0.385 6.385 6 C -0.036 4.036 7 O -0.203 6.203 8 C 0.080 3.920 9 C -0.231 4.231 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.039 4.039 13 C -0.033 4.033 14 N -0.317 5.317 15 C -0.066 4.066 16 C -0.005 4.005 17 H 0.135 0.865 18 C -0.081 4.081 19 N -0.143 5.143 20 C -0.043 4.043 21 C -0.566 4.566 22 H 0.092 0.908 23 C -0.131 4.131 24 N -0.535 5.535 25 Si 0.705 3.295 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.187 1.187 29 C -0.160 4.160 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.161 0.839 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.037 0.963 48 H 0.074 0.926 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -31.406 -3.823 17.939 36.370 hybrid contribution 0.553 0.018 0.860 1.023 sum -30.853 -3.805 18.799 36.329 Atomic orbital electron populations 1.22014 0.94078 1.03556 1.02631 1.21346 0.94402 0.82258 1.02843 1.45876 1.06438 1.09479 1.76795 1.20124 0.82607 0.90565 0.76900 1.90792 1.55029 1.45823 1.46853 1.22399 0.81859 0.95484 1.03882 1.86159 1.18255 1.26979 1.88944 1.18930 0.92265 0.83543 0.97276 1.21176 0.99639 0.92497 1.09794 1.20928 0.94706 0.96829 0.97526 1.20998 0.93434 0.98327 1.02150 1.19618 0.95502 0.92023 0.96777 1.20919 0.89715 1.01897 0.90789 1.60592 1.10237 1.48754 1.12098 1.22138 0.86325 1.02023 0.96080 1.19070 1.00470 0.88342 0.92590 0.86535 1.29126 0.91513 0.94454 0.92984 1.81022 1.11027 1.12841 1.09396 1.19634 0.87805 0.97594 0.99256 1.21039 0.94218 1.50502 0.90828 0.90779 1.24994 0.98399 0.94343 0.95384 1.69911 1.16530 1.49195 1.17885 0.86809 0.81340 0.78350 0.82991 1.20333 1.21257 1.18677 1.20347 0.91279 0.98461 1.05887 0.91806 0.90508 0.91866 0.91162 0.91222 0.76395 0.88958 0.88868 0.85781 0.85657 0.85349 0.89410 0.94035 0.83949 0.88873 0.94531 0.94245 0.96267 0.92584 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.35 10.03 37.16 0.37 0.03 16 2 C 0.11 0.57 6.39 -4.05 -0.03 0.55 16 3 N -0.73 -3.69 5.56 -60.30 -0.33 -4.02 16 4 C 0.51 4.60 7.91 -10.98 -0.09 4.51 16 5 O -0.51 -7.32 16.50 -14.36 -0.24 -7.56 16 6 C 0.04 0.30 5.22 36.01 0.19 0.49 16 7 O -0.29 -3.41 9.67 -39.33 -0.38 -3.79 16 8 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 9 C -0.21 -1.83 9.04 -39.43 -0.36 -2.18 16 10 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 11 C -0.13 -1.26 9.70 -39.56 -0.38 -1.64 16 12 C -0.04 -0.42 5.39 -104.64 -0.56 -0.98 16 13 C 0.10 1.02 5.81 -4.97 -0.03 0.99 16 14 N -0.69 -8.83 6.49 -115.06 -0.75 -9.58 16 15 C 0.06 0.88 5.12 -3.82 -0.02 0.86 16 16 C 0.02 0.31 2.42 -93.40 -0.23 0.08 16 17 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 18 C 0.24 4.84 12.97 -20.79 -0.27 4.57 16 19 N -0.47 -10.48 18.53 42.12 0.78 -9.70 16 20 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 21 C -0.53 -14.33 9.15 -34.44 -0.32 -14.65 16 22 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 23 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 24 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 25 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 29 C -0.14 -1.66 9.64 -39.43 -0.38 -2.04 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 0.62 8.47 -40.82 -0.35 0.28 16 36 H 0.09 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.09 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.12 0.69 6.30 -52.49 -0.33 0.36 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 43 H 0.34 4.83 7.80 -39.29 -0.31 4.53 16 44 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 47 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 417.68 15.07 6.29 6.29 Total: -1.00 -36.63 417.68 -9.08 -45.71 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.61 Total: 0.71 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.95 Total: -7.67 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.47 Total: -49.79 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.62 Total: -11.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.63 -9.08 -45.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548788381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.741 kcal (2) G-P(sol) polarization free energy of solvation -36.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds