Wall clock time and date at job start Wed Apr 1 2020 05:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47233 * 2 1 4 4 C 1.46501 * 119.99954 * 270.79674 * 3 2 1 5 5 H 1.09003 * 109.54092 * 181.64381 * 4 3 2 6 6 C 1.53174 * 109.54234 * 61.38215 * 4 3 2 7 7 C 1.53093 * 109.16629 * 183.15294 * 6 4 3 8 8 O 1.42901 * 109.41241 * 57.60271 * 7 6 4 9 9 C 1.42903 * 114.10045 * 298.84329 * 8 7 6 10 10 C 1.52994 * 109.48383 * 301.17549 * 9 8 7 11 11 C 1.53004 * 109.49039 * 181.14641 * 9 8 7 12 12 C 1.53090 * 109.41487 * 61.16016 * 9 8 7 13 13 S 1.65601 * 119.99989 * 90.79863 * 3 2 1 14 14 O 1.42108 * 104.27472 * 153.92902 * 13 3 2 15 15 O 1.42096 * 104.27806 * 26.07235 * 13 3 2 16 16 C 1.81401 * 104.44979 * 269.99713 * 13 3 2 17 17 C 1.53002 * 109.46878 * 180.02562 * 16 13 3 18 18 C 1.50701 * 115.54796 * 65.34264 * 17 16 13 19 19 H 1.07994 * 120.00009 * 270.85603 * 18 17 16 20 20 C 1.37882 * 119.99817 * 90.86091 * 18 17 16 21 21 N 1.31516 * 120.00168 * 353.46225 * 20 18 17 22 22 Si 1.86797 * 119.99661 * 173.47155 * 20 18 17 23 23 H 1.48497 * 109.47388 * 89.99537 * 22 20 18 24 24 H 1.48504 * 109.46862 * 209.99271 * 22 20 18 25 25 H 1.48498 * 109.47322 * 329.99050 * 22 20 18 26 26 C 1.52993 * 117.50153 * 279.66665 * 17 16 13 27 27 C 1.53005 * 117.49553 * 211.00773 * 17 16 13 28 28 H 1.08998 * 109.47289 * 307.26852 * 1 2 3 29 29 H 1.09001 * 109.47503 * 67.26447 * 1 2 3 30 30 H 1.08994 * 109.47569 * 187.26601 * 1 2 3 31 31 H 1.08997 * 109.47542 * 239.99744 * 2 1 3 32 32 H 1.09006 * 109.47270 * 120.00071 * 2 1 3 33 33 H 1.09003 * 109.52200 * 303.05312 * 6 4 3 34 34 H 1.08996 * 109.52614 * 63.24508 * 6 4 3 35 35 H 1.09003 * 109.48107 * 297.62811 * 7 6 4 36 36 H 1.08998 * 109.49419 * 177.59720 * 7 6 4 37 37 H 1.08993 * 109.47514 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.47671 * 299.94464 * 10 9 8 39 39 H 1.09000 * 109.46851 * 59.94279 * 10 9 8 40 40 H 1.08999 * 109.47384 * 300.05501 * 11 9 8 41 41 H 1.08998 * 109.46851 * 60.05367 * 11 9 8 42 42 H 1.08997 * 109.46966 * 180.02562 * 11 9 8 43 43 H 1.09000 * 109.52504 * 182.47957 * 12 9 8 44 44 H 1.09012 * 109.57246 * 62.32685 * 12 9 8 45 45 H 1.09001 * 109.46597 * 60.03240 * 16 13 3 46 46 H 1.08995 * 109.47032 * 300.03220 * 16 13 3 47 47 H 0.97002 * 119.99568 * 185.01855 * 21 20 18 48 48 H 1.09004 * 117.50158 * 0.02562 * 26 17 16 49 49 H 1.09004 * 117.49837 * 145.02164 * 26 17 16 50 50 H 1.08997 * 117.49577 * 214.98012 * 27 17 16 51 51 H 1.08998 * 117.49913 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2458 2.0777 -1.2686 5 1 2.6334 3.0772 -1.0714 6 6 0.9267 2.1807 -2.0403 7 6 1.1885 2.8389 -3.3975 8 8 2.1601 2.0760 -4.1159 9 6 3.4288 1.9853 -3.4644 10 6 3.9943 3.3907 -3.2508 11 6 4.3921 1.1743 -4.3335 12 6 3.2570 1.2928 -2.1099 13 16 2.3131 2.1552 1.4340 14 8 3.2951 3.1301 1.1105 15 8 2.5971 1.1044 2.3475 16 6 0.7378 2.9523 1.8504 17 6 0.8831 3.7098 3.1718 18 6 1.8349 4.8780 3.1499 19 1 2.8800 4.7274 3.3763 20 6 1.3712 6.1393 2.8409 21 7 0.1293 6.3035 2.4405 22 14 2.5072 7.6145 2.9907 23 1 3.2130 7.8287 1.7018 24 1 1.7094 8.8217 3.3246 25 1 3.5022 7.3662 4.0647 26 6 0.7906 2.8981 4.4653 27 6 -0.3575 3.8258 4.0597 28 1 -0.3634 0.6223 0.8178 29 1 -0.3634 0.3972 -0.9478 30 1 -0.3634 -1.0193 0.1300 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.5150 1.1830 -2.1928 34 1 0.2189 2.7850 -1.4730 35 1 1.5621 3.8514 -3.2445 36 1 0.2609 2.8762 -3.9687 37 1 4.9617 3.3214 -2.7535 38 1 4.1166 3.8838 -4.2152 39 1 3.3077 3.9684 -2.6320 40 1 3.9889 0.1732 -4.4860 41 1 4.5143 1.6675 -5.2978 42 1 5.3595 1.1050 -3.8361 43 1 4.2157 1.2620 -1.5923 44 1 2.8928 0.2767 -2.2629 45 1 -0.0382 2.1933 1.9502 46 1 0.4636 3.6504 1.0595 47 1 -0.1760 7.1784 2.1537 48 1 0.6265 1.8243 4.3751 49 1 1.4179 3.2093 5.3007 50 1 -0.4850 4.7468 4.6284 51 1 -1.2770 3.3620 3.7028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567214836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:16 Heat of formation + Delta-G solvation = -99.110306 kcal Electronic energy + Delta-G solvation = -31517.769291 eV Core-core repulsion = 27545.087444 eV Total energy + Delta-G solvation = -3972.681847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.22265 -36.82497 -36.77136 -36.37109 -35.11355 -33.67637 -32.26672 -32.03299 -29.81602 -28.25604 -27.73244 -27.33729 -25.47676 -24.29547 -22.61944 -21.59409 -21.20532 -19.48134 -19.18464 -18.35694 -17.26621 -16.51223 -16.43830 -16.16801 -15.36283 -15.16296 -14.78109 -14.65167 -14.55004 -14.20051 -13.92253 -13.84514 -13.61214 -13.22192 -13.00424 -12.92413 -12.49382 -12.35521 -12.15883 -12.03753 -11.91614 -11.84209 -11.67421 -11.52272 -11.42354 -11.32144 -11.16006 -11.03867 -11.00378 -10.96244 -10.85312 -10.60270 -10.50496 -10.46309 -10.11880 -10.00138 -9.72706 -9.49575 -8.99950 -8.85086 -8.54643 -8.08422 -6.14644 -4.24789 1.00121 3.23880 3.28445 3.34050 3.40053 3.69694 4.35482 4.52712 4.58133 4.66789 4.74765 4.78632 4.96648 5.02524 5.08812 5.11676 5.18045 5.18918 5.29570 5.33902 5.38580 5.44982 5.47725 5.53665 5.57112 5.66841 5.70520 5.72769 5.77978 5.82294 5.90335 5.91409 5.99593 6.05793 6.12451 6.14622 6.21662 6.25468 6.33092 6.35932 6.47628 6.59229 6.70842 6.88574 6.99418 7.22693 7.23294 7.42185 7.79562 8.19398 8.81037 9.45375 10.92644 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.004626 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.254753 B = 6051.921459 C = 7157.683724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.110 3.890 3 N -1.003 6.003 4 C 0.147 3.853 5 H 0.106 0.894 6 C -0.171 4.171 7 C 0.059 3.941 8 O -0.375 6.375 9 C 0.114 3.886 10 C -0.185 4.185 11 C -0.135 4.135 12 C -0.148 4.148 13 S 2.601 3.399 14 O -0.946 6.946 15 O -0.973 6.973 16 C -0.553 4.553 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.069 0.931 20 C 0.081 3.919 21 N -0.876 5.876 22 Si 0.890 3.110 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.269 1.269 26 C -0.214 4.214 27 C -0.132 4.132 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.262 0.738 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -10.427 -12.236 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.016 4.016 3 N -0.837 5.837 4 C 0.040 3.960 5 H 0.124 0.876 6 C -0.210 4.210 7 C -0.018 4.018 8 O -0.294 6.294 9 C 0.074 3.926 10 C -0.242 4.242 11 C -0.193 4.193 12 C -0.187 4.187 13 S 2.700 3.300 14 O -0.936 6.936 15 O -0.963 6.963 16 C -0.686 4.686 17 C 0.036 3.964 18 C -0.548 4.548 19 H 0.087 0.913 20 C -0.124 4.124 21 N -0.511 5.511 22 Si 0.717 3.283 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.194 1.194 26 C -0.251 4.251 27 C -0.171 4.171 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.147 0.853 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.107 0.893 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.566 -10.399 -11.956 15.923 hybrid contribution -0.386 1.136 0.127 1.206 sum 1.179 -9.264 -11.829 15.071 Atomic orbital electron populations 1.22518 0.96573 1.02275 1.02910 1.21249 0.93842 0.82666 1.03838 1.58001 1.82215 1.22280 1.21162 1.20905 0.94598 0.97033 0.83426 0.87574 1.22801 0.98458 1.02963 0.96813 1.22592 0.92265 0.94670 0.92309 1.87929 1.21227 1.73489 1.46797 1.21462 0.84365 0.95053 0.91719 1.22510 1.02425 0.96755 1.02546 1.21740 0.97873 0.99941 0.99718 1.22534 1.00471 1.00262 0.95423 1.05361 0.78272 0.73940 0.72394 1.93531 1.56257 1.61722 1.82129 1.93476 1.84420 1.55693 1.62733 1.30106 1.18632 1.10057 1.09811 1.18325 0.99499 0.95225 0.83306 1.20524 0.94143 0.90508 1.49589 0.91304 1.24944 0.94847 0.98780 0.93839 1.70000 1.15462 1.23832 1.41839 0.86597 0.80832 0.81721 0.79127 1.20137 1.21099 1.19403 1.23268 1.04686 0.95874 1.01311 1.22481 0.91075 0.99475 1.04091 0.92321 0.91591 0.91702 0.90385 0.89163 0.90013 0.90100 0.92440 0.88712 0.91070 0.91835 0.91344 0.91946 0.91853 0.91075 0.90333 0.90588 0.88296 0.85315 0.92810 0.90789 0.89518 0.89303 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.84 37.15 0.37 -1.67 16 2 C 0.11 1.38 5.81 -4.05 -0.02 1.35 16 3 N -1.00 -15.29 2.65 -107.11 -0.28 -15.58 16 4 C 0.15 2.06 2.25 -67.75 -0.15 1.91 16 5 H 0.11 1.70 5.33 -51.93 -0.28 1.43 16 6 C -0.17 -2.05 4.74 -26.59 -0.13 -2.17 16 7 C 0.06 0.66 6.52 37.21 0.24 0.91 16 8 O -0.38 -4.56 10.24 -35.23 -0.36 -4.92 16 9 C 0.11 1.30 1.11 -90.57 -0.10 1.20 16 10 C -0.19 -2.15 7.93 37.15 0.29 -1.85 16 11 C -0.14 -1.26 8.85 37.16 0.33 -0.94 16 12 C -0.15 -1.81 4.21 -26.59 -0.11 -1.92 16 13 S 2.60 52.39 5.23 -107.50 -0.56 51.83 16 14 O -0.95 -22.09 15.90 -57.54 -0.91 -23.00 16 15 O -0.97 -21.12 16.57 -57.54 -0.95 -22.07 16 16 C -0.55 -11.46 6.00 37.16 0.22 -11.24 16 17 C 0.04 0.94 1.44 -155.66 -0.22 0.72 16 18 C -0.51 -13.88 7.96 -34.44 -0.27 -14.16 16 19 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 20 C 0.08 2.17 5.36 -17.82 -0.10 2.08 16 21 N -0.88 -23.80 12.67 55.43 0.70 -23.10 16 22 Si 0.89 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.21 -4.73 9.96 -26.70 -0.27 -5.00 16 27 C -0.13 -3.02 9.09 -26.69 -0.24 -3.26 16 28 H 0.06 0.71 6.47 -51.93 -0.34 0.38 16 29 H 0.07 0.67 5.50 -51.93 -0.29 0.38 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.82 6.28 -51.93 -0.33 0.49 16 32 H 0.09 1.21 6.89 -51.93 -0.36 0.85 16 33 H 0.08 0.89 5.70 -51.93 -0.30 0.60 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.87 4.98 -51.93 -0.26 0.61 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.85 6.49 -51.92 -0.34 0.51 16 45 H 0.10 1.76 6.47 -51.92 -0.34 1.42 16 46 H 0.13 2.73 8.14 -51.93 -0.42 2.30 16 47 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 48 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 50 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 51 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -31.57 395.75 -10.20 -41.77 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.60 Total: 6.96 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: -0.16 Total: -34.05 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.42 Total: -38.68 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.23 Total: -50.00 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 52.39 SS G_CDS: -0.56 Total: 51.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.57 -10.20 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567214836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.343 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds