Wall clock time and date at job start Wed Apr 1 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47233 * 2 1 4 4 C 1.46501 * 119.99954 * 270.79674 * 3 2 1 5 5 H 1.09003 * 109.54092 * 181.64381 * 4 3 2 6 6 C 1.53174 * 109.54234 * 61.38215 * 4 3 2 7 7 C 1.53093 * 109.16629 * 183.15294 * 6 4 3 8 8 O 1.42901 * 109.41241 * 57.60271 * 7 6 4 9 9 C 1.42903 * 114.10045 * 298.84329 * 8 7 6 10 10 C 1.52994 * 109.48383 * 301.17549 * 9 8 7 11 11 C 1.53004 * 109.49039 * 181.14641 * 9 8 7 12 12 C 1.53090 * 109.41487 * 61.16016 * 9 8 7 13 13 S 1.65601 * 119.99989 * 90.79863 * 3 2 1 14 14 O 1.42108 * 104.27472 * 153.92902 * 13 3 2 15 15 O 1.42096 * 104.27806 * 26.07235 * 13 3 2 16 16 C 1.81401 * 104.44979 * 269.99713 * 13 3 2 17 17 C 1.53002 * 109.46878 * 180.02562 * 16 13 3 18 18 C 1.50701 * 115.54796 * 65.34264 * 17 16 13 19 19 H 1.07994 * 120.00009 * 270.85603 * 18 17 16 20 20 C 1.37882 * 119.99817 * 90.86091 * 18 17 16 21 21 N 1.31516 * 120.00168 * 353.46225 * 20 18 17 22 22 Si 1.86797 * 119.99661 * 173.47155 * 20 18 17 23 23 H 1.48497 * 109.47388 * 89.99537 * 22 20 18 24 24 H 1.48504 * 109.46862 * 209.99271 * 22 20 18 25 25 H 1.48498 * 109.47322 * 329.99050 * 22 20 18 26 26 C 1.52993 * 117.50153 * 279.66665 * 17 16 13 27 27 C 1.53005 * 117.49553 * 211.00773 * 17 16 13 28 28 H 1.08998 * 109.47289 * 307.26852 * 1 2 3 29 29 H 1.09001 * 109.47503 * 67.26447 * 1 2 3 30 30 H 1.08994 * 109.47569 * 187.26601 * 1 2 3 31 31 H 1.08997 * 109.47542 * 239.99744 * 2 1 3 32 32 H 1.09006 * 109.47270 * 120.00071 * 2 1 3 33 33 H 1.09003 * 109.52200 * 303.05312 * 6 4 3 34 34 H 1.08996 * 109.52614 * 63.24508 * 6 4 3 35 35 H 1.09003 * 109.48107 * 297.62811 * 7 6 4 36 36 H 1.08998 * 109.49419 * 177.59720 * 7 6 4 37 37 H 1.08993 * 109.47514 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.47671 * 299.94464 * 10 9 8 39 39 H 1.09000 * 109.46851 * 59.94279 * 10 9 8 40 40 H 1.08999 * 109.47384 * 300.05501 * 11 9 8 41 41 H 1.08998 * 109.46851 * 60.05367 * 11 9 8 42 42 H 1.08997 * 109.46966 * 180.02562 * 11 9 8 43 43 H 1.09000 * 109.52504 * 182.47957 * 12 9 8 44 44 H 1.09012 * 109.57246 * 62.32685 * 12 9 8 45 45 H 1.09001 * 109.46597 * 60.03240 * 16 13 3 46 46 H 1.08995 * 109.47032 * 300.03220 * 16 13 3 47 47 H 0.97002 * 119.99568 * 185.01855 * 21 20 18 48 48 H 1.09004 * 117.50158 * 0.02562 * 26 17 16 49 49 H 1.09004 * 117.49837 * 145.02164 * 26 17 16 50 50 H 1.08997 * 117.49577 * 214.98012 * 27 17 16 51 51 H 1.08998 * 117.49913 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2458 2.0777 -1.2686 5 1 2.6334 3.0772 -1.0714 6 6 0.9267 2.1807 -2.0403 7 6 1.1885 2.8389 -3.3975 8 8 2.1601 2.0760 -4.1159 9 6 3.4288 1.9853 -3.4644 10 6 3.9943 3.3907 -3.2508 11 6 4.3921 1.1743 -4.3335 12 6 3.2570 1.2928 -2.1099 13 16 2.3131 2.1552 1.4340 14 8 3.2951 3.1301 1.1105 15 8 2.5971 1.1044 2.3475 16 6 0.7378 2.9523 1.8504 17 6 0.8831 3.7098 3.1718 18 6 1.8349 4.8780 3.1499 19 1 2.8800 4.7274 3.3763 20 6 1.3712 6.1393 2.8409 21 7 0.1293 6.3035 2.4405 22 14 2.5072 7.6145 2.9907 23 1 3.2130 7.8287 1.7018 24 1 1.7094 8.8217 3.3246 25 1 3.5022 7.3662 4.0647 26 6 0.7906 2.8981 4.4653 27 6 -0.3575 3.8258 4.0597 28 1 -0.3634 0.6223 0.8178 29 1 -0.3634 0.3972 -0.9478 30 1 -0.3634 -1.0193 0.1300 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.5150 1.1830 -2.1928 34 1 0.2189 2.7850 -1.4730 35 1 1.5621 3.8514 -3.2445 36 1 0.2609 2.8762 -3.9687 37 1 4.9617 3.3214 -2.7535 38 1 4.1166 3.8838 -4.2152 39 1 3.3077 3.9684 -2.6320 40 1 3.9889 0.1732 -4.4860 41 1 4.5143 1.6675 -5.2978 42 1 5.3595 1.1050 -3.8361 43 1 4.2157 1.2620 -1.5923 44 1 2.8928 0.2767 -2.2629 45 1 -0.0382 2.1933 1.9502 46 1 0.4636 3.6504 1.0595 47 1 -0.1760 7.1784 2.1537 48 1 0.6265 1.8243 4.3751 49 1 1.4179 3.2093 5.3007 50 1 -0.4850 4.7468 4.6284 51 1 -1.2770 3.3620 3.7028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567214836.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:14 Heat of formation + Delta-G solvation = -118.790485 kcal Electronic energy + Delta-G solvation = -31518.622688 eV Core-core repulsion = 27545.087444 eV Total energy + Delta-G solvation = -3973.535243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.18112 -38.60429 -38.09958 -37.85273 -36.80644 -34.55727 -34.08144 -33.25267 -30.84052 -29.93036 -28.73208 -28.15769 -27.50759 -25.26704 -23.61924 -23.01691 -22.66225 -21.28641 -20.15840 -19.78426 -18.69482 -18.36656 -17.59803 -17.17275 -16.83565 -16.68032 -16.46609 -15.83833 -15.76960 -15.56904 -15.29937 -15.03041 -14.81701 -14.66969 -13.98659 -13.91339 -13.81685 -13.69999 -13.40388 -13.23992 -13.16897 -12.98304 -12.94645 -12.92163 -12.89116 -12.84482 -12.67390 -12.60665 -12.45126 -12.25157 -12.18835 -12.02514 -11.92394 -11.85191 -11.60316 -11.47282 -10.96522 -10.92794 -10.54950 -10.44066 -10.17291 -9.76654 -8.20331 -6.34637 -0.57177 1.35928 1.37923 1.47271 1.84983 2.37464 2.82499 2.94394 3.05332 3.29119 3.36941 3.53681 3.72917 3.81831 3.88981 4.04775 4.05923 4.10571 4.17785 4.28499 4.34386 4.37882 4.44347 4.46490 4.53837 4.59034 4.60696 4.68588 4.75010 4.79357 4.82375 4.85014 4.90131 4.93947 4.96401 5.02889 5.10265 5.11443 5.17990 5.20909 5.27142 5.36998 5.38495 5.43941 5.49790 5.58117 5.69456 5.75600 6.20729 6.33015 6.71064 7.36589 8.86394 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.004626 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.254753 B = 6051.921459 C = 7157.683724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 N -0.992 5.992 4 C 0.140 3.860 5 H 0.079 0.921 6 C -0.166 4.166 7 C 0.057 3.943 8 O -0.379 6.379 9 C 0.113 3.887 10 C -0.187 4.187 11 C -0.133 4.133 12 C -0.145 4.145 13 S 2.613 3.387 14 O -0.987 6.987 15 O -0.992 6.992 16 C -0.550 4.550 17 C 0.008 3.992 18 C -0.529 4.529 19 H 0.047 0.953 20 C 0.043 3.957 21 N -0.892 5.892 22 Si 0.933 3.067 23 H -0.276 1.276 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.204 4.204 27 C -0.129 4.129 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.265 0.735 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -12.089 -13.829 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 N -0.829 5.829 4 C 0.034 3.966 5 H 0.097 0.903 6 C -0.205 4.205 7 C -0.020 4.020 8 O -0.298 6.298 9 C 0.073 3.927 10 C -0.244 4.244 11 C -0.190 4.190 12 C -0.184 4.184 13 S 2.712 3.288 14 O -0.978 6.978 15 O -0.982 6.982 16 C -0.682 4.682 17 C 0.006 3.994 18 C -0.566 4.566 19 H 0.065 0.935 20 C -0.160 4.160 21 N -0.528 5.528 22 Si 0.758 3.242 23 H -0.201 1.201 24 H -0.198 1.198 25 H -0.196 1.196 26 C -0.241 4.241 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.147 0.853 46 H 0.137 0.863 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.765 -12.057 -13.531 18.140 hybrid contribution -0.124 1.608 0.604 1.722 sum 0.641 -10.449 -12.927 16.634 Atomic orbital electron populations 1.22532 0.95060 1.03646 1.03026 1.21551 0.95163 0.80791 1.04763 1.57629 1.82284 1.23138 1.19854 1.21051 0.96434 0.96026 0.83111 0.90298 1.22775 0.97015 1.03966 0.96719 1.22686 0.93013 0.94134 0.92195 1.87930 1.21440 1.73481 1.46977 1.21549 0.84654 0.94854 0.91649 1.22533 1.01969 0.97224 1.02719 1.21748 0.97702 0.99944 0.99598 1.22540 0.99524 1.00880 0.95443 1.04671 0.77681 0.73291 0.73109 1.93475 1.57916 1.63337 1.83037 1.93440 1.84681 1.55852 1.64238 1.29996 1.20148 1.10386 1.07680 1.18457 0.99857 0.95680 0.85448 1.20657 0.93806 0.92263 1.49891 0.93526 1.25482 0.96096 1.00583 0.93790 1.70040 1.16153 1.24356 1.42271 0.85933 0.79592 0.79768 0.78881 1.20128 1.19772 1.19580 1.23306 1.03816 0.96929 1.00029 1.22421 0.91798 0.99001 1.03553 0.93613 0.90460 0.89327 0.87659 0.90028 0.88251 0.90594 0.93241 0.86558 0.91180 0.90802 0.93098 0.91152 0.91277 0.90165 0.91134 0.88904 0.85321 0.86251 0.92569 0.88471 0.89995 0.91434 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 9.84 71.98 0.71 -2.79 16 2 C 0.10 2.31 5.81 86.38 0.50 2.81 16 3 N -0.99 -29.36 2.65 -492.80 -1.31 -30.67 16 4 C 0.14 3.83 2.25 45.11 0.10 3.94 16 5 H 0.08 2.62 5.33 -2.39 -0.01 2.61 16 6 C -0.17 -3.68 4.74 30.68 0.15 -3.53 16 7 C 0.06 1.19 6.52 72.01 0.47 1.65 16 8 O -0.38 -8.39 10.24 -148.98 -1.53 -9.91 16 9 C 0.11 2.39 1.11 -10.76 -0.01 2.38 16 10 C -0.19 -4.29 7.93 71.98 0.57 -3.72 16 11 C -0.13 -2.17 8.85 71.98 0.64 -1.53 16 12 C -0.14 -3.32 4.21 30.68 0.13 -3.20 16 13 S 2.61 106.05 5.23 -56.49 -0.30 105.75 16 14 O -0.99 -47.82 15.90 -127.65 -2.03 -49.85 16 15 O -0.99 -42.92 16.57 -127.65 -2.11 -45.03 16 16 C -0.55 -22.68 6.00 71.98 0.43 -22.25 16 17 C 0.01 0.38 1.44 -52.93 -0.08 0.30 16 18 C -0.53 -29.50 7.96 25.60 0.20 -29.30 16 19 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 20 C 0.04 2.37 5.36 84.66 0.45 2.82 16 21 N -0.89 -48.94 12.67 21.45 0.27 -48.67 16 22 Si 0.93 44.06 29.55 68.60 2.03 46.09 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 26 C -0.20 -8.90 9.96 30.62 0.30 -8.59 16 27 C -0.13 -5.84 9.09 30.62 0.28 -5.56 16 28 H 0.04 0.99 6.47 -2.39 -0.02 0.98 16 29 H 0.08 1.29 5.50 -2.39 -0.01 1.28 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.84 6.28 -2.39 -0.02 1.83 16 32 H 0.08 2.03 6.89 -2.38 -0.02 2.02 16 33 H 0.10 1.85 5.70 -2.39 -0.01 1.83 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.11 6.34 -2.39 -0.02 1.09 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.34 4.98 -2.39 -0.01 1.32 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.09 1.80 6.49 -2.38 -0.02 1.79 16 45 H 0.13 4.39 6.47 -2.39 -0.02 4.38 16 46 H 0.12 5.12 8.14 -2.39 -0.02 5.10 16 47 H 0.27 13.81 8.32 -92.71 -0.77 13.04 16 48 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 49 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 50 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 51 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -68.50 395.75 0.79 -67.72 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.91 Total: 31.15 kcal Atomic # 6 Polarization: -71.43 SS G_CDS: 4.85 Total: -66.58 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.04 Total: -79.34 kcal Atomic # 8 Polarization: -99.13 SS G_CDS: -5.67 Total: -104.80 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 106.05 SS G_CDS: -0.30 Total: 105.75 kcal Total: -68.50 0.79 -67.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567214836.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.072 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds