Wall clock time and date at job start Wed Apr 1 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47364 * 2 1 4 4 C 1.46499 * 119.99878 * 274.82098 * 3 2 1 5 5 C 1.50692 * 109.47104 * 269.99896 * 4 3 2 6 6 H 1.08002 * 120.00416 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00194 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46884 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47147 * 120.00292 * 9 7 5 12 12 H 1.48501 * 109.47123 * 240.00205 * 9 7 5 13 13 C 1.34777 * 120.00124 * 94.81813 * 3 2 1 14 14 O 1.21272 * 119.99991 * 174.96171 * 13 3 2 15 15 C 1.50702 * 119.99745 * 354.96631 * 13 3 2 16 16 N 1.46898 * 109.47026 * 182.05167 * 15 13 3 17 17 C 1.46616 * 110.99788 * 282.59419 * 16 15 13 18 18 C 1.52586 * 110.41853 * 279.14554 * 17 16 15 19 19 C 1.50562 * 110.35240 * 43.79369 * 18 17 16 20 20 O 1.21292 * 120.27670 * 103.64622 * 19 18 17 21 21 N 1.34895 * 119.44604 * 283.66884 * 19 18 17 22 22 C 1.46503 * 120.81308 * 183.60164 * 21 19 18 23 23 C 1.40313 * 118.37601 * 3.58196 * 21 19 18 24 24 C 1.38508 * 120.43834 * 229.60566 * 23 21 19 25 25 C 1.38306 * 119.86837 * 178.85020 * 24 23 21 26 26 C 1.38283 * 120.18810 * 359.70274 * 25 24 23 27 27 C 1.38249 * 120.27593 * 0.36283 * 26 25 24 28 28 C 1.38688 * 119.91160 * 0.15097 * 27 26 25 29 29 H 1.09003 * 109.47097 * 65.01947 * 1 2 3 30 30 H 1.08999 * 109.47047 * 185.02530 * 1 2 3 31 31 H 1.08998 * 109.46800 * 305.02318 * 1 2 3 32 32 H 1.09006 * 109.46927 * 240.00008 * 2 1 3 33 33 H 1.08999 * 109.46820 * 120.00509 * 2 1 3 34 34 H 1.09003 * 109.47024 * 29.99899 * 4 3 2 35 35 H 1.09004 * 109.46971 * 150.00023 * 4 3 2 36 36 H 0.97001 * 120.00239 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47496 * 62.04343 * 15 13 3 38 38 H 1.09000 * 109.46880 * 302.04332 * 15 13 3 39 39 H 1.08998 * 109.31025 * 158.85281 * 17 16 15 40 40 H 1.09005 * 109.30777 * 39.43087 * 17 16 15 41 41 H 1.09005 * 109.32638 * 283.51789 * 18 17 16 42 42 H 1.09006 * 109.32277 * 164.06201 * 18 17 16 43 43 H 1.08998 * 109.47207 * 265.09707 * 22 21 19 44 44 H 1.08998 * 109.47129 * 25.09649 * 22 21 19 45 45 H 1.09000 * 109.47565 * 145.09183 * 22 21 19 46 46 H 1.07997 * 120.06483 * 358.57732 * 24 23 21 47 47 H 1.07998 * 119.90402 * 179.68007 * 25 24 23 48 48 H 1.08001 * 119.86348 * 180.35560 * 26 25 24 49 49 H 1.07996 * 120.04562 * 180.12432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1621 2.1073 -1.2642 5 6 3.5460 1.8843 -1.8171 6 1 4.2484 1.2634 -1.2807 7 6 3.9159 2.4729 -3.0079 8 7 3.0609 3.2294 -3.6609 9 14 5.6318 2.1971 -3.6929 10 1 6.3951 1.3139 -2.7749 11 1 5.5343 1.5559 -5.0287 12 1 6.3297 3.5017 -3.8197 13 6 2.3355 1.9838 1.1631 14 8 2.8254 3.0932 1.1573 15 6 2.0813 1.2791 2.4707 16 7 2.4642 2.1584 3.5834 17 6 3.9198 2.1827 3.7569 18 6 4.3833 0.9566 4.5381 19 6 3.6861 -0.2793 4.0348 20 8 4.2732 -1.0650 3.3213 21 7 2.4027 -0.5052 4.3837 22 6 1.7198 -1.7356 3.9762 23 6 1.7381 0.4668 5.1467 24 6 1.0463 0.1078 6.2917 25 6 0.4153 1.0787 7.0480 26 6 0.4785 2.4067 6.6676 27 6 1.1659 2.7725 5.5253 28 6 1.7925 1.8041 4.7552 29 1 -0.3633 0.4340 -0.9315 30 1 -0.3633 -1.0237 0.0900 31 1 -0.3633 0.5898 0.8416 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.4227 1.7438 -1.9780 35 1 2.0072 3.1723 -1.0912 36 1 3.3210 3.6432 -4.4988 37 1 2.6719 0.3638 2.5110 38 1 1.0226 1.0322 2.5505 39 1 4.2031 3.0844 4.2998 40 1 4.3994 2.1889 2.7781 41 1 4.1548 1.0947 5.5949 42 1 5.4601 0.8378 4.4172 43 1 1.1630 -1.5548 3.0568 44 1 2.4564 -2.5209 3.8064 45 1 1.0318 -2.0468 4.7624 46 1 0.9960 -0.9287 6.5909 47 1 -0.1286 0.7989 7.9381 48 1 -0.0114 3.1612 7.2652 49 1 1.2146 3.8109 5.2327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572664003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:36 Heat of formation + Delta-G solvation = 1.810133 kcal Electronic energy + Delta-G solvation = -32410.731346 eV Core-core repulsion = 28339.274538 eV Total energy + Delta-G solvation = -4071.456808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07210 -38.96586 -38.88402 -36.73604 -35.70234 -35.10593 -32.77568 -31.74209 -30.57448 -30.14925 -29.92668 -28.22132 -27.03447 -25.61800 -24.21532 -23.03377 -22.84307 -22.39890 -21.19380 -19.97721 -18.42547 -17.52829 -17.30415 -16.90707 -16.63017 -16.31915 -15.83275 -15.40884 -15.04287 -14.83682 -14.71178 -14.49136 -14.21027 -13.97615 -13.81737 -13.73997 -13.31902 -13.03525 -12.94817 -12.70662 -12.58288 -12.54766 -12.25344 -12.03109 -11.89688 -11.80190 -11.64608 -11.39598 -11.23870 -11.13110 -10.83603 -10.67470 -10.52020 -10.35892 -10.07141 -9.88641 -9.55502 -9.21571 -8.98076 -8.42149 -8.38604 -8.23095 -7.59379 -5.99281 -4.03151 0.88868 1.06096 2.27801 2.56528 3.33647 3.38787 3.40652 3.41520 3.44664 3.50604 4.12417 4.19801 4.50204 4.56029 4.67485 4.80294 4.85004 4.91623 5.00819 5.05812 5.13366 5.17149 5.24165 5.27038 5.35417 5.36364 5.46984 5.48017 5.51691 5.60694 5.65408 5.66666 5.80854 5.87873 5.91959 6.03467 6.04383 6.21525 6.27240 6.30394 6.49939 6.50577 6.70211 6.94878 7.12091 7.29690 7.49055 7.61832 7.77019 7.97837 8.29672 8.48308 8.96989 9.17452 9.61842 11.08772 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.003465 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.065621 B = 8078.287681 C = 8151.381170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.249 3.751 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.029 3.971 16 N -0.483 5.483 17 C 0.074 3.926 18 C -0.179 4.179 19 C 0.522 3.478 20 O -0.518 6.518 21 N -0.575 5.575 22 C 0.080 3.920 23 C 0.107 3.893 24 C -0.125 4.125 25 C -0.107 4.107 26 C -0.121 4.121 27 C -0.074 4.074 28 C 0.086 3.914 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -7.838 23.339 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.130 3.870 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.101 4.101 16 N -0.202 5.202 17 C -0.052 4.052 18 C -0.220 4.220 19 C 0.313 3.687 20 O -0.393 6.393 21 N -0.304 5.304 22 C -0.061 4.061 23 C 0.013 3.987 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.140 4.140 27 C -0.094 4.094 28 C -0.011 4.011 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.884 -7.139 22.553 24.637 hybrid contribution 0.962 -1.117 -0.295 1.504 sum -5.922 -8.257 22.257 24.467 Atomic orbital electron populations 1.22209 0.96758 1.01129 1.02507 1.21394 0.93533 0.84385 1.02414 1.48219 1.63769 1.13141 1.07980 1.19238 0.96734 0.92842 0.78144 1.21481 0.98568 1.30225 1.05805 0.92485 1.24924 0.97452 0.94972 0.96752 1.69943 1.34924 1.32328 1.16326 0.86468 0.84465 0.78035 0.78639 1.19781 1.21019 1.20881 1.20038 0.79533 0.86686 0.84538 1.90660 1.42407 1.19731 1.86798 1.22480 1.02213 0.94937 0.90482 1.58557 1.06987 1.52604 1.02017 1.22155 0.85244 0.95616 1.02233 1.22472 1.02969 0.94040 1.02567 1.20725 0.80677 0.87867 0.79468 1.90782 1.65166 1.47944 1.35395 1.45768 1.11898 1.19831 1.52902 1.21818 0.97931 0.85749 1.00607 1.18496 0.98828 0.88980 0.92439 1.20909 1.00226 1.00186 0.93238 1.21033 0.99219 0.92733 0.99605 1.21152 0.99627 0.96287 0.96923 1.21014 0.95043 0.99695 0.93623 1.18813 0.99609 0.90696 0.91957 0.91842 0.92312 0.93181 0.90024 0.92266 0.95069 0.94004 0.92860 0.90753 0.88784 0.88434 0.88337 0.89004 0.87191 0.91808 0.89657 0.90761 0.85701 0.85547 0.85352 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.11 1.86 5.97 -4.04 -0.02 1.83 16 3 N -0.60 -13.20 2.46 -175.06 -0.43 -13.63 16 4 C 0.25 6.69 5.14 -5.20 -0.03 6.66 16 5 C -0.52 -15.24 9.39 -34.44 -0.32 -15.57 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.51 11.02 7.28 -10.98 -0.08 10.94 16 14 O -0.52 -13.30 15.06 5.56 0.08 -13.22 16 15 C 0.03 0.48 2.74 -4.98 -0.01 0.47 16 16 N -0.48 -7.24 4.16 -172.86 -0.72 -7.96 16 17 C 0.07 1.05 5.65 -4.19 -0.02 1.02 16 18 C -0.18 -2.18 5.40 -28.16 -0.15 -2.33 16 19 C 0.52 7.40 4.56 -11.00 -0.05 7.35 16 20 O -0.52 -9.10 16.52 5.55 0.09 -9.01 16 21 N -0.58 -6.70 1.71 -120.66 -0.21 -6.91 16 22 C 0.08 0.76 10.33 59.85 0.62 1.38 16 23 C 0.11 1.15 4.59 -83.42 -0.38 0.76 16 24 C -0.13 -1.03 9.39 -39.46 -0.37 -1.40 16 25 C -0.11 -0.76 10.04 -39.54 -0.40 -1.15 16 26 C -0.12 -0.92 10.03 -39.56 -0.40 -1.32 16 27 C -0.07 -0.75 9.98 -39.41 -0.39 -1.14 16 28 C 0.09 1.03 4.20 -83.68 -0.35 0.68 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 32 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 33 H 0.06 0.93 6.34 -51.93 -0.33 0.60 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.25 3.24 -51.93 -0.17 1.08 16 38 H 0.09 1.44 7.20 -51.93 -0.37 1.07 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.72 6.84 -51.93 -0.36 1.37 16 41 H 0.09 0.94 7.31 -51.93 -0.38 0.56 16 42 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.86 7.41 -51.93 -0.38 0.47 16 45 H 0.07 0.50 7.01 -51.93 -0.36 0.14 16 46 H 0.13 0.82 7.38 -52.49 -0.39 0.44 16 47 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 48 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -35.81 389.39 -8.97 -44.78 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.29 Total: 1.10 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -2.08 Total: 7.86 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.62 Total: -54.85 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.18 Total: -22.23 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.81 -8.97 -44.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572664003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.587 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds