Wall clock time and date at job start Wed Apr 1 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47364 * 2 1 4 4 C 1.46499 * 119.99878 * 274.82098 * 3 2 1 5 5 C 1.50692 * 109.47104 * 269.99896 * 4 3 2 6 6 H 1.08002 * 120.00416 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00194 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46884 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47147 * 120.00292 * 9 7 5 12 12 H 1.48501 * 109.47123 * 240.00205 * 9 7 5 13 13 C 1.34777 * 120.00124 * 94.81813 * 3 2 1 14 14 O 1.21272 * 119.99991 * 174.96171 * 13 3 2 15 15 C 1.50702 * 119.99745 * 354.96631 * 13 3 2 16 16 N 1.46898 * 109.47026 * 182.05167 * 15 13 3 17 17 C 1.46616 * 110.99788 * 282.59419 * 16 15 13 18 18 C 1.52586 * 110.41853 * 279.14554 * 17 16 15 19 19 C 1.50562 * 110.35240 * 43.79369 * 18 17 16 20 20 O 1.21292 * 120.27670 * 103.64622 * 19 18 17 21 21 N 1.34895 * 119.44604 * 283.66884 * 19 18 17 22 22 C 1.46503 * 120.81308 * 183.60164 * 21 19 18 23 23 C 1.40313 * 118.37601 * 3.58196 * 21 19 18 24 24 C 1.38508 * 120.43834 * 229.60566 * 23 21 19 25 25 C 1.38306 * 119.86837 * 178.85020 * 24 23 21 26 26 C 1.38283 * 120.18810 * 359.70274 * 25 24 23 27 27 C 1.38249 * 120.27593 * 0.36283 * 26 25 24 28 28 C 1.38688 * 119.91160 * 0.15097 * 27 26 25 29 29 H 1.09003 * 109.47097 * 65.01947 * 1 2 3 30 30 H 1.08999 * 109.47047 * 185.02530 * 1 2 3 31 31 H 1.08998 * 109.46800 * 305.02318 * 1 2 3 32 32 H 1.09006 * 109.46927 * 240.00008 * 2 1 3 33 33 H 1.08999 * 109.46820 * 120.00509 * 2 1 3 34 34 H 1.09003 * 109.47024 * 29.99899 * 4 3 2 35 35 H 1.09004 * 109.46971 * 150.00023 * 4 3 2 36 36 H 0.97001 * 120.00239 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47496 * 62.04343 * 15 13 3 38 38 H 1.09000 * 109.46880 * 302.04332 * 15 13 3 39 39 H 1.08998 * 109.31025 * 158.85281 * 17 16 15 40 40 H 1.09005 * 109.30777 * 39.43087 * 17 16 15 41 41 H 1.09005 * 109.32638 * 283.51789 * 18 17 16 42 42 H 1.09006 * 109.32277 * 164.06201 * 18 17 16 43 43 H 1.08998 * 109.47207 * 265.09707 * 22 21 19 44 44 H 1.08998 * 109.47129 * 25.09649 * 22 21 19 45 45 H 1.09000 * 109.47565 * 145.09183 * 22 21 19 46 46 H 1.07997 * 120.06483 * 358.57732 * 24 23 21 47 47 H 1.07998 * 119.90402 * 179.68007 * 25 24 23 48 48 H 1.08001 * 119.86348 * 180.35560 * 26 25 24 49 49 H 1.07996 * 120.04562 * 180.12432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1621 2.1073 -1.2642 5 6 3.5460 1.8843 -1.8171 6 1 4.2484 1.2634 -1.2807 7 6 3.9159 2.4729 -3.0079 8 7 3.0609 3.2294 -3.6609 9 14 5.6318 2.1971 -3.6929 10 1 6.3951 1.3139 -2.7749 11 1 5.5343 1.5559 -5.0287 12 1 6.3297 3.5017 -3.8197 13 6 2.3355 1.9838 1.1631 14 8 2.8254 3.0932 1.1573 15 6 2.0813 1.2791 2.4707 16 7 2.4642 2.1584 3.5834 17 6 3.9198 2.1827 3.7569 18 6 4.3833 0.9566 4.5381 19 6 3.6861 -0.2793 4.0348 20 8 4.2732 -1.0650 3.3213 21 7 2.4027 -0.5052 4.3837 22 6 1.7198 -1.7356 3.9762 23 6 1.7381 0.4668 5.1467 24 6 1.0463 0.1078 6.2917 25 6 0.4153 1.0787 7.0480 26 6 0.4785 2.4067 6.6676 27 6 1.1659 2.7725 5.5253 28 6 1.7925 1.8041 4.7552 29 1 -0.3633 0.4340 -0.9315 30 1 -0.3633 -1.0237 0.0900 31 1 -0.3633 0.5898 0.8416 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.4227 1.7438 -1.9780 35 1 2.0072 3.1723 -1.0912 36 1 3.3210 3.6432 -4.4988 37 1 2.6719 0.3638 2.5110 38 1 1.0226 1.0322 2.5505 39 1 4.2031 3.0844 4.2998 40 1 4.3994 2.1889 2.7781 41 1 4.1548 1.0947 5.5949 42 1 5.4601 0.8378 4.4172 43 1 1.1630 -1.5548 3.0568 44 1 2.4564 -2.5209 3.8064 45 1 1.0318 -2.0468 4.7624 46 1 0.9960 -0.9287 6.5909 47 1 -0.1286 0.7989 7.9381 48 1 -0.0114 3.1612 7.2652 49 1 1.2146 3.8109 5.2327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572664003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:35 Heat of formation + Delta-G solvation = -21.327943 kcal Electronic energy + Delta-G solvation = -32411.734689 eV Core-core repulsion = 28339.274538 eV Total energy + Delta-G solvation = -4072.460151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.06454 -40.59452 -39.83411 -37.83595 -36.88047 -36.56396 -34.95733 -32.80646 -31.76154 -31.35918 -30.87390 -29.60320 -28.43595 -26.95089 -25.21259 -24.81193 -24.07417 -23.51579 -22.16730 -20.88983 -20.05632 -18.77554 -18.46793 -18.36329 -17.92186 -17.76633 -17.16354 -16.72264 -16.55730 -16.21570 -15.76895 -15.65754 -15.35608 -15.25378 -14.79046 -14.74647 -14.64045 -14.45284 -14.35329 -13.89979 -13.69568 -13.61262 -13.41775 -13.32232 -13.22643 -13.17654 -12.87975 -12.73866 -12.61077 -12.53244 -12.42670 -12.28961 -12.21649 -11.96542 -11.72552 -11.34821 -10.83131 -10.68647 -10.66778 -9.96565 -9.48356 -9.37061 -9.18708 -8.25421 -6.39790 0.14855 0.37997 1.24332 1.32084 1.34315 1.46689 1.69331 1.77800 2.07268 2.36056 2.68511 2.77438 3.03416 3.25197 3.55273 3.68183 3.81626 3.84453 3.96681 4.01324 4.14554 4.17727 4.20971 4.32843 4.36614 4.42771 4.49404 4.52668 4.54922 4.58081 4.66191 4.78492 4.79637 4.84327 4.90662 4.93480 5.00187 5.14283 5.16023 5.30206 5.36186 5.47688 5.54039 5.59398 5.62668 5.81217 5.83937 6.03927 6.04047 6.36075 6.66158 6.74270 6.77631 7.25101 7.44644 8.81706 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.003465 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.065621 B = 8078.287681 C = 8151.381170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.103 3.897 3 N -0.605 5.605 4 C 0.268 3.732 5 C -0.542 4.542 6 H 0.043 0.957 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.266 1.266 12 H -0.277 1.277 13 C 0.496 3.504 14 O -0.570 6.570 15 C 0.055 3.945 16 N -0.498 5.498 17 C 0.077 3.923 18 C -0.170 4.170 19 C 0.514 3.486 20 O -0.564 6.564 21 N -0.569 5.569 22 C 0.074 3.926 23 C 0.094 3.906 24 C -0.116 4.116 25 C -0.093 4.093 26 C -0.110 4.110 27 C -0.084 4.084 28 C 0.060 3.940 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.024 0.976 35 H -0.002 1.002 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.148 0.852 47 H 0.162 0.838 48 H 0.156 0.844 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 -9.518 26.413 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.020 4.020 3 N -0.338 5.338 4 C 0.146 3.854 5 C -0.581 4.581 6 H 0.062 0.938 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.190 1.190 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.449 6.449 15 C -0.076 4.076 16 N -0.217 5.217 17 C -0.050 4.050 18 C -0.211 4.211 19 C 0.305 3.695 20 O -0.443 6.443 21 N -0.296 5.296 22 C -0.067 4.067 23 C 0.000 4.000 24 C -0.136 4.136 25 C -0.112 4.112 26 C -0.129 4.129 27 C -0.104 4.104 28 C -0.036 4.036 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.166 0.834 47 H 0.179 0.821 48 H 0.173 0.827 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.430 -8.849 25.669 28.430 hybrid contribution 1.320 -0.540 -1.138 1.825 sum -7.109 -9.389 24.530 27.211 Atomic orbital electron populations 1.22112 0.93769 1.03639 1.01881 1.21651 0.95924 0.81617 1.02788 1.48261 1.63992 1.14793 1.06730 1.18672 0.95624 0.90928 0.80135 1.21673 0.99410 1.30613 1.06384 0.93822 1.25801 1.01683 0.94398 0.96920 1.70043 1.36898 1.32747 1.16786 0.85413 0.79154 0.78111 0.78405 1.19840 1.19048 1.20292 1.21046 0.78185 0.86361 0.86077 1.90615 1.44467 1.22093 1.87712 1.22186 1.02972 0.94125 0.88280 1.58455 1.07397 1.52685 1.03129 1.22046 0.85221 0.97404 1.00279 1.22390 1.02922 0.92356 1.03455 1.21033 0.81617 0.87786 0.79046 1.90753 1.66436 1.49515 1.37567 1.45787 1.11111 1.20505 1.52204 1.22022 0.98048 0.84616 1.01995 1.18563 0.99894 0.87998 0.93554 1.21182 0.98829 1.01742 0.91882 1.21458 0.97831 0.91926 0.99971 1.21471 0.98183 0.97536 0.95715 1.21097 0.95591 0.99129 0.94572 1.18877 1.01102 0.92022 0.91599 0.93494 0.88309 0.92572 0.91157 0.90351 0.95765 0.98378 0.92294 0.90740 0.87124 0.86932 0.92784 0.86466 0.87028 0.91719 0.90677 0.87325 0.83415 0.82056 0.82670 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 10.24 71.98 0.74 -3.52 16 2 C 0.10 3.62 5.97 86.38 0.52 4.13 16 3 N -0.61 -28.13 2.46 -826.16 -2.03 -30.16 16 4 C 0.27 15.26 5.14 85.63 0.44 15.70 16 5 C -0.54 -33.22 9.39 25.60 0.24 -32.98 16 6 H 0.04 2.73 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.67 5.46 84.66 0.46 1.13 16 8 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 9 Si 0.96 47.22 29.54 68.60 2.03 49.24 16 10 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.50 22.78 7.28 87.66 0.64 23.42 16 14 O -0.57 -31.32 15.06 -3.01 -0.05 -31.36 16 15 C 0.05 1.85 2.74 85.56 0.23 2.08 16 16 N -0.50 -15.18 4.16 -700.81 -2.91 -18.09 16 17 C 0.08 2.29 5.65 86.22 0.49 2.78 16 18 C -0.17 -4.15 5.40 29.67 0.16 -3.99 16 19 C 0.51 14.51 4.56 87.60 0.40 14.91 16 20 O -0.56 -20.35 16.52 -3.07 -0.05 -20.40 16 21 N -0.57 -12.28 1.71 -653.97 -1.12 -13.39 16 22 C 0.07 1.22 10.33 127.77 1.32 2.54 16 23 C 0.09 1.75 4.59 38.14 0.18 1.92 16 24 C -0.12 -1.37 9.39 22.35 0.21 -1.16 16 25 C -0.09 -0.81 10.04 22.30 0.22 -0.59 16 26 C -0.11 -1.22 10.03 22.28 0.22 -1.00 16 27 C -0.08 -1.53 9.98 22.38 0.22 -1.30 16 28 C 0.06 1.34 4.20 38.30 0.16 1.51 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.47 7.55 -2.39 -0.02 1.45 16 32 H 0.07 2.62 8.11 -2.38 -0.02 2.60 16 33 H 0.08 2.45 6.34 -2.39 -0.02 2.43 16 34 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 35 H 0.00 -0.12 7.50 -2.39 -0.02 -0.14 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.08 2.55 3.24 -2.39 -0.01 2.55 16 38 H 0.11 3.31 7.20 -2.39 -0.02 3.30 16 39 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.05 2.07 6.84 -2.38 -0.02 2.05 16 41 H 0.12 2.23 7.31 -2.38 -0.02 2.21 16 42 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.42 7.41 -2.39 -0.02 1.41 16 45 H 0.11 1.02 7.01 -2.39 -0.02 1.00 16 46 H 0.15 1.10 7.38 -2.91 -0.02 1.08 16 47 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 48 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 49 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -84.13 389.39 3.96 -80.16 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.96 Total: 15.67 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 6.85 Total: 25.59 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.77 Total: -118.91 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.10 Total: -51.76 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -84.13 3.96 -80.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572664003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.835 kcal (2) G-P(sol) polarization free energy of solvation -84.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds