Wall clock time and date at job start Wed Apr 1 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47102 * 2 1 4 4 C 1.42899 * 114.00164 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.94551 * 18.60283 * 4 3 2 6 6 C 1.54141 * 113.58197 * 247.18858 * 4 3 2 7 7 C 1.53948 * 87.22681 * 270.18165 * 6 4 3 8 8 H 1.09005 * 113.66437 * 89.86299 * 7 6 4 9 9 N 1.46497 * 113.66711 * 220.82537 * 7 6 4 10 10 S 1.65600 * 120.00218 * 243.99021 * 9 7 6 11 11 O 1.42100 * 104.27364 * 308.92402 * 10 9 7 12 12 O 1.42105 * 104.27508 * 181.06635 * 10 9 7 13 13 C 1.81394 * 104.45042 * 64.99653 * 10 9 7 14 14 C 1.52997 * 109.47321 * 179.97438 * 13 10 9 15 15 C 1.53001 * 109.46903 * 60.00111 * 14 13 10 16 16 C 1.52999 * 109.47337 * 300.00385 * 14 13 10 17 17 C 1.50694 * 109.47460 * 179.97438 * 14 13 10 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 14 13 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 14 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 C 1.52908 * 113.66336 * 150.00183 * 4 3 2 26 26 C 1.52908 * 121.13826 * 215.29782 * 25 4 3 27 27 C 1.53953 * 86.78394 * 100.81959 * 26 25 4 28 28 C 1.52913 * 121.13542 * 323.85818 * 25 4 3 29 29 H 1.09003 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46863 * 299.99592 * 1 2 3 31 31 H 1.08996 * 109.48056 * 59.99542 * 1 2 3 32 32 H 1.09004 * 109.46955 * 240.00932 * 2 1 3 33 33 H 1.08996 * 109.47362 * 120.00176 * 2 1 3 34 34 H 1.08995 * 113.58182 * 155.60966 * 6 4 3 35 35 H 1.09002 * 113.63692 * 24.76272 * 6 4 3 36 36 H 0.97005 * 120.00048 * 63.98041 * 9 7 6 37 37 H 1.09003 * 109.47694 * 59.99800 * 13 10 9 38 38 H 1.08999 * 109.47482 * 299.99994 * 13 10 9 39 39 H 1.09000 * 109.47703 * 180.02562 * 15 14 13 40 40 H 1.09007 * 109.47140 * 300.00340 * 15 14 13 41 41 H 1.09000 * 109.47809 * 59.99897 * 15 14 13 42 42 H 1.09002 * 109.46412 * 299.99812 * 16 14 13 43 43 H 1.08993 * 109.47298 * 59.99049 * 16 14 13 44 44 H 1.09001 * 109.47411 * 179.97438 * 16 14 13 45 45 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 46 46 H 1.08999 * 113.66053 * 215.29338 * 26 25 4 47 47 H 1.08998 * 113.66222 * 346.34517 * 26 25 4 48 48 H 1.09004 * 113.57746 * 270.13344 * 27 26 25 49 49 H 1.08996 * 113.57930 * 139.33739 * 27 26 25 50 50 H 1.09000 * 113.66291 * 13.65308 * 28 25 4 51 51 H 1.09003 * 113.66285 * 144.70458 * 28 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9297 0.5453 -0.3193 6 6 4.0017 2.0551 1.3029 7 6 3.8579 3.4396 0.6454 8 1 2.8919 3.9113 0.8255 9 7 4.9870 4.3354 0.9078 10 16 4.7543 5.7304 1.7693 11 8 3.6581 6.3626 1.1230 12 8 6.0373 6.3407 1.8011 13 6 4.2771 5.1653 3.4256 14 6 4.0320 6.3771 4.3270 15 6 2.9093 7.2328 3.7369 16 6 5.3121 7.2098 4.4214 17 6 3.6349 5.9077 5.7028 18 1 3.5639 4.8507 5.9132 19 6 3.3611 6.8275 6.6928 20 7 3.4470 8.1145 6.4364 21 14 2.8682 6.2456 8.3980 22 1 2.6305 7.4217 9.2728 23 1 1.6257 5.4377 8.3055 24 1 3.9573 5.4148 8.9715 25 6 3.9471 2.7177 -0.6996 26 6 5.2488 2.6981 -1.5017 27 6 4.3694 2.6035 -2.7618 28 6 3.2508 3.2728 -1.9427 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 5.0357 1.7695 1.4962 35 1 3.3543 1.9140 2.1684 36 1 5.8710 4.1114 0.5771 37 1 5.0770 4.5560 3.8462 38 1 3.3653 4.5718 3.3584 39 1 2.7349 8.0964 4.3788 40 1 3.1961 7.5724 2.7416 41 1 1.9973 6.6397 3.6696 42 1 6.1119 6.6000 4.8417 43 1 5.5989 7.5492 3.4262 44 1 5.1374 8.0733 5.0632 45 1 3.2541 8.7617 7.1328 46 1 5.8182 3.6250 -1.4342 47 1 5.8578 1.8114 -1.3257 48 1 4.1402 1.5797 -3.0577 49 1 4.7279 3.2140 -3.5905 50 1 2.2638 2.8452 -2.1189 51 1 3.2587 4.3613 -1.9991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572712022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:07 Heat of formation + Delta-G solvation = -99.820613 kcal Electronic energy + Delta-G solvation = -30444.473409 eV Core-core repulsion = 26471.760761 eV Total energy + Delta-G solvation = -3972.712648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.79188 -38.22798 -38.12722 -38.08809 -36.89433 -36.20363 -33.65796 -33.42580 -31.41377 -28.33523 -27.70227 -27.25148 -26.74532 -25.55842 -25.08081 -23.63862 -21.92873 -21.39130 -20.27560 -19.49811 -18.74717 -18.07123 -17.83790 -17.03405 -16.92629 -16.68534 -16.58893 -16.39544 -16.01423 -15.54729 -15.03928 -14.69246 -14.49597 -14.42671 -14.19779 -13.90710 -13.83227 -13.66412 -13.45987 -13.20189 -13.04135 -13.00339 -12.86561 -12.84095 -12.80144 -12.53487 -12.50701 -12.43876 -12.29678 -12.17500 -12.13836 -11.99320 -11.89179 -11.57407 -11.46164 -11.28344 -11.23899 -10.92967 -10.62952 -10.41247 -10.30122 -10.08353 -8.02822 -6.21590 -0.59490 1.45262 1.45484 1.52936 1.90835 2.44295 2.55035 2.85591 3.19227 3.32371 3.40478 3.57665 3.75177 3.77564 3.89120 3.97442 3.99386 4.13843 4.23551 4.25395 4.33034 4.43749 4.55332 4.56321 4.59287 4.67250 4.80070 4.85326 4.85874 4.89002 4.93173 4.96248 4.98073 5.06207 5.07761 5.09194 5.09979 5.16566 5.31814 5.34105 5.37781 5.44856 5.50046 5.58341 5.64078 5.96209 6.10563 6.16066 6.33898 6.39395 6.82754 7.46555 8.97007 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.003496 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.227376 B = 8008.271397 C = 9493.172222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.385 6.385 4 C 0.099 3.901 5 H 0.107 0.893 6 C -0.169 4.169 7 C 0.128 3.872 8 H 0.098 0.902 9 N -1.096 6.096 10 S 2.610 3.390 11 O -0.994 6.994 12 O -0.994 6.994 13 C -0.582 4.582 14 C 0.070 3.930 15 C -0.159 4.159 16 C -0.160 4.160 17 C -0.518 4.518 18 H 0.063 0.937 19 C 0.018 3.982 20 N -0.908 5.908 21 Si 0.955 3.045 22 H -0.287 1.287 23 H -0.272 1.272 24 H -0.271 1.271 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.129 4.129 28 C -0.133 4.133 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.423 0.577 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.037 0.963 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.071 0.929 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -19.708 -16.089 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.305 6.305 4 C 0.040 3.960 5 H 0.124 0.876 6 C -0.209 4.209 7 C 0.020 3.980 8 H 0.116 0.884 9 N -0.855 5.855 10 S 2.708 3.292 11 O -0.984 6.984 12 O -0.984 6.984 13 C -0.715 4.715 14 C 0.068 3.932 15 C -0.217 4.217 16 C -0.218 4.218 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.182 4.182 20 N -0.547 5.547 21 Si 0.781 3.219 22 H -0.213 1.213 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.112 4.112 26 C -0.146 4.146 27 C -0.166 4.166 28 C -0.171 4.171 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.260 0.740 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.112 0.888 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.637 -18.421 -16.311 24.613 hybrid contribution -0.144 -0.297 1.502 1.538 sum 0.493 -18.719 -14.809 23.873 Atomic orbital electron populations 1.21780 0.93592 1.03226 1.02418 1.22721 0.95818 0.82775 1.01145 1.87903 1.20013 1.28047 1.94497 1.22572 0.81557 0.96973 0.94887 0.87572 1.24129 1.03483 0.94918 0.98349 1.22258 0.88523 0.89400 0.97774 0.88433 1.55276 1.17930 1.41507 1.70778 1.04766 0.73377 0.73855 0.77195 1.93506 1.56817 1.74183 1.73862 1.93502 1.41937 1.75089 1.87848 1.30444 1.12132 1.09840 1.19089 1.17911 0.92629 0.88754 0.93936 1.22199 0.99026 1.02242 0.98195 1.22205 0.97320 1.02311 0.99920 1.21258 1.46519 0.93140 0.94747 0.91882 1.25687 0.95284 0.95041 1.02173 1.69943 1.49331 1.01225 1.34213 0.85665 0.78860 0.77629 0.79792 1.21307 1.19738 1.19598 1.23229 0.99613 0.95796 0.92530 1.22608 0.94168 1.03417 0.94424 1.22811 0.95733 1.01549 0.96496 1.22659 0.99072 0.99817 0.95535 0.89134 0.92971 0.92413 0.91780 0.92451 0.86462 0.90383 0.73972 0.84348 0.85063 0.91032 0.95035 0.94358 0.93999 0.95026 0.91010 0.92925 0.89648 0.88727 0.88828 0.90928 0.91155 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.72 6.50 71.98 0.47 1.19 16 3 O -0.39 -7.75 9.84 -148.98 -1.47 -9.21 16 4 C 0.10 1.65 4.17 30.95 0.13 1.78 16 5 H 0.11 1.20 7.87 -2.39 -0.02 1.18 16 6 C -0.17 -3.14 7.73 31.30 0.24 -2.90 16 7 C 0.13 3.10 4.14 45.28 0.19 3.29 16 8 H 0.10 2.84 7.76 -2.38 -0.02 2.82 16 9 N -1.10 -28.71 5.47 -168.18 -0.92 -29.63 16 10 S 2.61 97.09 4.47 -56.49 -0.25 96.84 16 11 O -0.99 -43.13 15.19 -127.65 -1.94 -45.07 16 12 O -0.99 -41.78 15.70 -127.65 -2.00 -43.78 16 13 C -0.58 -22.54 5.01 71.98 0.36 -22.18 16 14 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 15 C -0.16 -8.12 7.77 71.98 0.56 -7.56 16 16 C -0.16 -8.08 7.78 71.98 0.56 -7.52 16 17 C -0.52 -27.26 8.01 25.60 0.21 -27.05 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.02 0.94 5.15 84.66 0.44 1.37 16 20 N -0.91 -50.94 9.35 21.45 0.20 -50.74 16 21 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C -0.11 -2.09 0.99 -52.31 -0.05 -2.14 16 26 C -0.11 -1.60 7.13 30.89 0.22 -1.38 16 27 C -0.13 -1.86 8.08 31.23 0.25 -1.61 16 28 C -0.13 -2.73 7.71 30.89 0.24 -2.50 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.42 8.93 7.47 -96.74 -0.72 8.21 16 37 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 38 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 39 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 40 H 0.03 1.54 5.47 -2.38 -0.01 1.53 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.03 1.53 5.46 -2.39 -0.01 1.51 16 44 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 45 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 46 H 0.09 1.37 7.20 -2.39 -0.02 1.36 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 1.48 7.83 -2.39 -0.02 1.46 16 51 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -69.56 401.22 0.35 -69.21 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.19 Total: 33.07 kcal Atomic # 6 Polarization: -69.65 SS G_CDS: 4.52 Total: -65.13 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -0.72 Total: -80.37 kcal Atomic # 8 Polarization: -92.65 SS G_CDS: -5.41 Total: -98.06 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 97.09 SS G_CDS: -0.25 Total: 96.84 kcal Total: -69.56 0.35 -69.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572712022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.615 kcal (2) G-P(sol) polarization free energy of solvation -69.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds