Wall clock time and date at job start Wed Apr 1 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47271 * 2 1 4 4 C 1.36879 * 126.39672 * 265.18364 * 3 2 1 5 5 C 1.34667 * 106.81848 * 180.25089 * 4 3 2 6 6 N 1.34127 * 108.01916 * 359.74665 * 5 4 3 7 7 C 1.30498 * 109.25821 * 359.97438 * 6 5 4 8 8 C 1.50698 * 125.65409 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47274 * 90.01912 * 8 7 6 10 10 C 1.46904 * 110.99861 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46845 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47288 * 305.00178 * 11 10 9 13 13 O 1.42902 * 109.47342 * 65.00106 * 11 10 9 14 14 C 1.53003 * 109.47145 * 185.00466 * 11 10 9 15 15 O 1.42898 * 109.47374 * 175.00283 * 14 11 10 16 16 C 1.35672 * 116.99857 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.81893 * 359.72039 * 16 15 14 18 18 C 1.36436 * 120.18042 * 179.76629 * 17 16 15 19 19 C 1.40834 * 119.81580 * 0.50758 * 18 17 16 20 20 C 1.41213 * 120.17831 * 179.72338 * 19 18 17 21 21 H 1.07992 * 120.00446 * 24.57321 * 20 19 18 22 22 C 1.39900 * 119.99851 * 204.57584 * 20 19 18 23 23 N 1.30884 * 119.99942 * 17.92872 * 22 20 19 24 24 Si 1.86799 * 119.99948 * 197.93539 * 22 20 19 25 25 H 1.48491 * 109.47097 * 59.99508 * 24 22 20 26 26 H 1.48500 * 109.47102 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46852 * 299.99277 * 24 22 20 28 28 C 1.40829 * 119.63907 * 359.74870 * 19 18 17 29 29 C 1.36437 * 119.81450 * 359.97438 * 28 19 18 30 30 H 1.08991 * 109.47169 * 300.00680 * 1 2 3 31 31 H 1.09002 * 109.46669 * 60.00193 * 1 2 3 32 32 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47592 * 239.99256 * 2 1 3 34 34 H 1.09002 * 109.46669 * 119.99806 * 2 1 3 35 35 H 1.08004 * 126.59074 * 359.97438 * 4 3 2 36 36 H 1.08005 * 125.99333 * 179.72237 * 5 4 3 37 37 H 1.09002 * 109.46670 * 330.02653 * 8 7 6 38 38 H 1.08999 * 109.47438 * 210.02522 * 8 7 6 39 39 H 1.00900 * 111.00290 * 303.95774 * 9 8 7 40 40 H 1.08995 * 109.46982 * 300.00573 * 10 9 8 41 41 H 1.08998 * 109.46860 * 60.00424 * 10 9 8 42 42 H 0.96700 * 113.99356 * 59.99885 * 13 11 10 43 43 H 1.08999 * 109.46930 * 295.00113 * 14 11 10 44 44 H 1.09004 * 109.47022 * 54.99626 * 14 11 10 45 45 H 1.07992 * 119.90851 * 0.02562 * 17 16 15 46 46 H 1.08001 * 120.09079 * 180.25529 * 18 17 16 47 47 H 0.96995 * 119.99779 * 180.02562 * 23 22 20 48 48 H 1.08004 * 120.09232 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.90946 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3764 2.1161 -1.0979 5 6 2.7689 3.3231 -0.6478 6 7 2.6485 3.3270 0.6881 7 6 2.1957 2.1685 1.0828 8 6 1.9224 1.7724 2.5109 9 7 0.5349 2.1102 2.8558 10 6 0.2317 1.7369 4.2439 11 6 -1.2187 2.1027 4.5651 12 1 -1.3823 3.1594 4.3536 13 8 -2.0982 1.3142 3.7608 14 6 -1.4980 1.8296 6.0445 15 8 -2.8144 2.2790 6.3716 16 6 -3.2218 2.1099 7.6546 17 6 -2.3673 1.5149 8.5801 18 6 -2.7676 1.3455 9.8734 19 6 -4.0527 1.7644 10.2692 20 6 -4.4771 1.5875 11.6044 21 1 -3.7479 1.5154 12.3977 22 6 -5.8421 1.5055 11.8994 23 7 -6.7023 1.2405 10.9491 24 14 -6.4373 1.7745 13.6495 25 1 -6.0542 3.1370 14.0986 26 1 -7.9150 1.6353 13.6967 27 1 -5.8157 0.7653 14.5442 28 6 -4.9122 2.3601 9.3260 29 6 -4.4945 2.5273 8.0380 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3531 1.7891 -2.1270 36 1 3.1197 4.1440 -1.2557 37 1 2.6022 2.3087 3.1731 38 1 2.0744 0.6992 2.6258 39 1 0.3506 3.0892 2.6958 40 1 0.3719 0.6634 4.3703 41 1 0.8998 2.2724 4.9183 42 1 -2.0074 0.3612 3.8972 43 1 -1.4210 0.7596 6.2372 44 1 -0.7696 2.3623 6.6560 45 1 -1.3837 1.1906 8.2740 46 1 -2.1024 0.8879 10.5906 47 1 -7.6487 1.1841 11.1536 48 1 -5.8994 2.6836 9.6215 49 1 -5.1526 2.9836 7.3134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579828318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:45 Heat of formation + Delta-G solvation = -7.183368 kcal Electronic energy + Delta-G solvation = -28705.918305 eV Core-core repulsion = 24634.071509 eV Total energy + Delta-G solvation = -4071.846796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.38481 -39.11838 -37.85328 -36.29319 -35.49386 -35.23112 -33.32071 -31.42381 -30.39307 -29.99777 -29.30912 -28.87171 -26.48634 -24.82925 -24.09071 -23.77050 -22.06557 -21.64100 -20.73070 -20.58010 -19.87886 -17.72062 -17.36468 -17.06458 -16.70228 -16.24149 -15.87695 -15.57802 -15.24787 -14.90186 -14.84878 -14.59841 -14.19650 -14.05217 -13.93009 -13.85386 -13.63664 -13.20247 -12.91766 -12.76165 -12.52962 -12.34777 -12.23034 -12.15756 -12.13661 -11.78062 -11.66228 -11.39868 -11.12872 -11.00511 -10.82797 -10.60777 -10.23753 -10.01656 -9.95796 -9.89315 -9.83490 -9.33945 -9.02335 -8.91499 -8.61872 -7.65081 -7.03913 -6.72756 -4.26122 1.70781 2.46111 2.78520 2.81633 2.94397 3.07723 3.10014 3.21967 3.56005 3.94673 4.07073 4.22541 4.26031 4.41755 4.46742 4.61347 4.61655 4.74418 4.84162 4.89235 4.93328 5.06798 5.16101 5.17906 5.26451 5.32147 5.37269 5.38845 5.49252 5.59561 5.66588 5.89137 5.99099 6.03302 6.04713 6.22122 6.45567 6.49649 6.72267 6.87336 6.94135 6.97163 7.10523 7.17918 7.45692 7.54965 7.71945 7.78309 7.83066 7.99805 8.19893 8.44533 8.64630 8.89257 8.98109 10.21673 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.034154 B = 0.001527 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.630458 B =18332.157693 C =18573.305031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 N -0.443 5.443 4 C -0.057 4.057 5 C -0.029 4.029 6 N -0.490 5.490 7 C 0.210 3.790 8 C 0.144 3.856 9 N -0.674 5.674 10 C 0.031 3.969 11 C 0.116 3.884 12 H 0.104 0.896 13 O -0.540 6.540 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.009 4.009 17 C -0.168 4.168 18 C -0.199 4.199 19 C 0.088 3.912 20 C -0.464 4.464 21 H 0.076 0.924 22 C 0.075 3.925 23 N -0.798 5.798 24 Si 0.908 3.092 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.133 4.133 29 C -0.119 4.119 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.352 0.648 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.370 0.630 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.281 0.719 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.578 -3.251 -20.170 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.126 5.126 4 C -0.190 4.190 5 C -0.178 4.178 6 N -0.209 5.209 7 C -0.052 4.052 8 C 0.013 3.987 9 N -0.307 5.307 10 C -0.099 4.099 11 C 0.056 3.944 12 H 0.122 0.878 13 O -0.344 6.344 14 C -0.039 4.039 15 O -0.233 6.233 16 C -0.053 4.053 17 C -0.187 4.187 18 C -0.219 4.219 19 C 0.086 3.914 20 C -0.494 4.494 21 H 0.094 0.906 22 C -0.142 4.142 23 N -0.424 5.424 24 Si 0.732 3.268 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.153 4.153 29 C -0.138 4.138 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.190 0.810 36 H 0.186 0.814 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.171 0.829 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.216 0.784 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.910 -2.717 -20.314 25.345 hybrid contribution 0.437 -0.660 0.923 1.216 sum 15.347 -3.377 -19.391 24.959 Atomic orbital electron populations 1.22207 0.93114 1.03212 1.04611 1.21858 0.96583 0.79523 1.03979 1.45437 1.47724 1.12757 1.06688 1.22710 1.09344 0.94239 0.92731 1.22267 1.06892 0.97430 0.91212 1.70230 1.18854 1.19459 1.12355 1.22952 1.03686 0.87723 0.90854 1.20144 0.90340 1.01046 0.87126 1.60366 1.20930 1.26677 1.22754 1.22592 0.96750 1.01833 0.88688 1.21825 0.87309 0.97226 0.88061 0.87793 1.86649 1.61835 1.20932 1.64964 1.23097 0.86013 0.99190 0.95581 1.85887 1.30154 1.80059 1.27157 1.18616 0.95607 1.08713 0.82319 1.20386 0.98029 1.05304 0.94980 1.20547 0.98818 1.07975 0.94516 1.17595 0.90801 0.89514 0.93538 1.19428 0.91842 1.44696 0.93458 0.90599 1.25880 0.96849 0.92234 0.99219 1.69826 1.03900 1.34149 1.34558 0.86380 0.77805 0.80063 0.82525 1.18886 1.20378 1.19111 1.20982 1.01024 1.01542 0.91719 1.19848 0.93148 1.04019 0.96753 0.89304 0.92339 0.90895 0.89427 0.89238 0.81042 0.81424 0.91913 0.89672 0.82887 0.90164 0.93530 0.78373 0.92887 0.92516 0.88974 0.88793 0.90842 0.85665 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.10 0.55 6.61 -4.04 -0.03 0.53 16 3 N -0.44 -3.64 2.75 -113.90 -0.31 -3.95 16 4 C -0.06 -0.45 11.58 -16.56 -0.19 -0.65 16 5 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 6 N -0.49 -5.84 11.25 -10.82 -0.12 -5.96 16 7 C 0.21 2.10 7.42 -155.42 -1.15 0.94 16 8 C 0.14 1.16 5.99 -4.98 -0.03 1.13 16 9 N -0.67 -5.89 6.17 -115.06 -0.71 -6.60 16 10 C 0.03 0.26 5.32 -3.82 -0.02 0.24 16 11 C 0.12 1.36 3.43 -26.73 -0.09 1.27 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 13 O -0.54 -6.99 13.25 -40.08 -0.53 -7.53 16 14 C 0.04 0.56 4.37 37.16 0.16 0.73 16 15 O -0.32 -6.42 10.09 -23.57 -0.24 -6.65 16 16 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 17 C -0.17 -3.75 8.96 -39.83 -0.36 -4.11 16 18 C -0.20 -4.85 9.74 -39.25 -0.38 -5.24 16 19 C 0.09 2.35 5.57 -106.81 -0.60 1.75 16 20 C -0.46 -12.30 9.04 -37.83 -0.34 -12.64 16 21 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 22 C 0.08 1.89 5.13 -17.33 -0.09 1.80 16 23 N -0.80 -20.68 10.96 55.55 0.61 -20.07 16 24 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 29 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 30 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.39 7.21 -51.93 -0.37 0.02 16 35 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.54 7.16 -51.93 -0.37 0.17 16 39 H 0.35 3.49 8.72 -39.29 -0.34 3.14 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.37 3.59 9.05 45.56 0.41 4.00 16 43 H 0.05 0.73 7.64 -51.93 -0.40 0.34 16 44 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 45 H 0.09 1.75 6.27 -52.49 -0.33 1.42 16 46 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 48 H 0.13 3.36 6.16 -52.48 -0.32 3.03 16 49 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 409.08 15.07 6.16 6.16 Total: -1.00 -32.05 409.08 -10.85 -42.89 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.73 Total: 11.13 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.94 Total: -23.05 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.54 Total: -36.58 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.77 Total: -14.18 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.05 -10.85 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579828318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.709 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds