Wall clock time and date at job start Wed Apr 1 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47271 * 2 1 4 4 C 1.36879 * 126.39672 * 265.18364 * 3 2 1 5 5 C 1.34667 * 106.81848 * 180.25089 * 4 3 2 6 6 N 1.34127 * 108.01916 * 359.74665 * 5 4 3 7 7 C 1.30498 * 109.25821 * 359.97438 * 6 5 4 8 8 C 1.50698 * 125.65409 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47274 * 90.01912 * 8 7 6 10 10 C 1.46904 * 110.99861 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46845 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.47288 * 305.00178 * 11 10 9 13 13 O 1.42902 * 109.47342 * 65.00106 * 11 10 9 14 14 C 1.53003 * 109.47145 * 185.00466 * 11 10 9 15 15 O 1.42898 * 109.47374 * 175.00283 * 14 11 10 16 16 C 1.35672 * 116.99857 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.81893 * 359.72039 * 16 15 14 18 18 C 1.36436 * 120.18042 * 179.76629 * 17 16 15 19 19 C 1.40834 * 119.81580 * 0.50758 * 18 17 16 20 20 C 1.41213 * 120.17831 * 179.72338 * 19 18 17 21 21 H 1.07992 * 120.00446 * 24.57321 * 20 19 18 22 22 C 1.39900 * 119.99851 * 204.57584 * 20 19 18 23 23 N 1.30884 * 119.99942 * 17.92872 * 22 20 19 24 24 Si 1.86799 * 119.99948 * 197.93539 * 22 20 19 25 25 H 1.48491 * 109.47097 * 59.99508 * 24 22 20 26 26 H 1.48500 * 109.47102 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46852 * 299.99277 * 24 22 20 28 28 C 1.40829 * 119.63907 * 359.74870 * 19 18 17 29 29 C 1.36437 * 119.81450 * 359.97438 * 28 19 18 30 30 H 1.08991 * 109.47169 * 300.00680 * 1 2 3 31 31 H 1.09002 * 109.46669 * 60.00193 * 1 2 3 32 32 H 1.09001 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47592 * 239.99256 * 2 1 3 34 34 H 1.09002 * 109.46669 * 119.99806 * 2 1 3 35 35 H 1.08004 * 126.59074 * 359.97438 * 4 3 2 36 36 H 1.08005 * 125.99333 * 179.72237 * 5 4 3 37 37 H 1.09002 * 109.46670 * 330.02653 * 8 7 6 38 38 H 1.08999 * 109.47438 * 210.02522 * 8 7 6 39 39 H 1.00900 * 111.00290 * 303.95774 * 9 8 7 40 40 H 1.08995 * 109.46982 * 300.00573 * 10 9 8 41 41 H 1.08998 * 109.46860 * 60.00424 * 10 9 8 42 42 H 0.96700 * 113.99356 * 59.99885 * 13 11 10 43 43 H 1.08999 * 109.46930 * 295.00113 * 14 11 10 44 44 H 1.09004 * 109.47022 * 54.99626 * 14 11 10 45 45 H 1.07992 * 119.90851 * 0.02562 * 17 16 15 46 46 H 1.08001 * 120.09079 * 180.25529 * 18 17 16 47 47 H 0.96995 * 119.99779 * 180.02562 * 23 22 20 48 48 H 1.08004 * 120.09232 * 179.97438 * 28 19 18 49 49 H 1.07997 * 119.90946 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3764 2.1161 -1.0979 5 6 2.7689 3.3231 -0.6478 6 7 2.6485 3.3270 0.6881 7 6 2.1957 2.1685 1.0828 8 6 1.9224 1.7724 2.5109 9 7 0.5349 2.1102 2.8558 10 6 0.2317 1.7369 4.2439 11 6 -1.2187 2.1027 4.5651 12 1 -1.3823 3.1594 4.3536 13 8 -2.0982 1.3142 3.7608 14 6 -1.4980 1.8296 6.0445 15 8 -2.8144 2.2790 6.3716 16 6 -3.2218 2.1099 7.6546 17 6 -2.3673 1.5149 8.5801 18 6 -2.7676 1.3455 9.8734 19 6 -4.0527 1.7644 10.2692 20 6 -4.4771 1.5875 11.6044 21 1 -3.7479 1.5154 12.3977 22 6 -5.8421 1.5055 11.8994 23 7 -6.7023 1.2405 10.9491 24 14 -6.4373 1.7745 13.6495 25 1 -6.0542 3.1370 14.0986 26 1 -7.9150 1.6353 13.6967 27 1 -5.8157 0.7653 14.5442 28 6 -4.9122 2.3601 9.3260 29 6 -4.4945 2.5273 8.0380 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3531 1.7891 -2.1270 36 1 3.1197 4.1440 -1.2557 37 1 2.6022 2.3087 3.1731 38 1 2.0744 0.6992 2.6258 39 1 0.3506 3.0892 2.6958 40 1 0.3719 0.6634 4.3703 41 1 0.8998 2.2724 4.9183 42 1 -2.0074 0.3612 3.8972 43 1 -1.4210 0.7596 6.2372 44 1 -0.7696 2.3623 6.6560 45 1 -1.3837 1.1906 8.2740 46 1 -2.1024 0.8879 10.5906 47 1 -7.6487 1.1841 11.1536 48 1 -5.8994 2.6836 9.6215 49 1 -5.1526 2.9836 7.3134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579828318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:44 Heat of formation + Delta-G solvation = -28.419286 kcal Electronic energy + Delta-G solvation = -28706.839163 eV Core-core repulsion = 24634.071509 eV Total energy + Delta-G solvation = -4072.767654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.01340 -40.63945 -39.06468 -37.81484 -36.34867 -35.79225 -35.17022 -32.34930 -31.63827 -31.00768 -30.87775 -30.12492 -27.45607 -26.49814 -24.86987 -24.45997 -23.21523 -22.44994 -22.26709 -22.20701 -20.51539 -19.24660 -18.76368 -18.19277 -17.62391 -17.34951 -17.02696 -16.64089 -16.30423 -16.01030 -15.73105 -15.60029 -15.34346 -15.26997 -15.01761 -14.76419 -14.47864 -14.40459 -14.06426 -13.92407 -13.88835 -13.48049 -13.39969 -13.16458 -13.06783 -12.83829 -12.78313 -12.74466 -12.61789 -12.37551 -12.11139 -11.90695 -11.70328 -11.57816 -11.21073 -10.94731 -10.91689 -10.85802 -10.54145 -9.56712 -9.55422 -9.27087 -8.91736 -8.58930 -6.22101 0.96126 1.03470 1.07994 1.40097 1.51024 1.55243 1.92577 2.10754 2.23132 2.46505 2.73492 3.23911 3.50701 3.63281 3.71164 3.82498 3.85111 3.95588 4.03579 4.08234 4.18742 4.30036 4.33076 4.37047 4.38732 4.43513 4.47895 4.50074 4.61641 4.67777 4.80943 4.87521 4.89933 4.91586 5.04240 5.08433 5.22612 5.28896 5.37315 5.45232 5.59491 5.64940 5.82147 5.87978 5.89092 6.06348 6.17305 6.27062 6.30717 6.57378 6.81574 6.92022 6.95621 7.11475 7.16891 8.37439 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.034154 B = 0.001527 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.630458 B =18332.157693 C =18573.305031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.443 5.443 4 C -0.049 4.049 5 C -0.060 4.060 6 N -0.531 5.531 7 C 0.195 3.805 8 C 0.149 3.851 9 N -0.676 5.676 10 C 0.043 3.957 11 C 0.125 3.875 12 H 0.089 0.911 13 O -0.560 6.560 14 C 0.029 3.971 15 O -0.332 6.332 16 C 0.001 3.999 17 C -0.164 4.164 18 C -0.207 4.207 19 C 0.053 3.947 20 C -0.500 4.500 21 H 0.077 0.923 22 C 0.033 3.967 23 N -0.832 5.832 24 Si 0.982 3.018 25 H -0.262 1.262 26 H -0.269 1.269 27 H -0.259 1.259 28 C -0.153 4.153 29 C -0.136 4.136 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.203 0.797 36 H 0.179 0.821 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.343 0.657 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.384 0.616 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.132 0.868 46 H 0.107 0.893 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.115 -4.778 -20.811 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.125 5.125 4 C -0.183 4.183 5 C -0.208 4.208 6 N -0.251 5.251 7 C -0.068 4.068 8 C 0.019 3.981 9 N -0.308 5.308 10 C -0.086 4.086 11 C 0.065 3.935 12 H 0.107 0.893 13 O -0.366 6.366 14 C -0.047 4.047 15 O -0.248 6.248 16 C -0.043 4.043 17 C -0.183 4.183 18 C -0.226 4.226 19 C 0.051 3.949 20 C -0.530 4.530 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.458 5.458 24 Si 0.803 3.197 25 H -0.186 1.186 26 H -0.194 1.194 27 H -0.183 1.183 28 C -0.172 4.172 29 C -0.155 4.155 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.220 0.780 36 H 0.196 0.804 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.232 0.768 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.149 0.851 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.126 0.874 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.467 -4.273 -20.977 27.008 hybrid contribution 0.053 -0.204 0.899 0.923 sum 16.520 -4.476 -20.078 26.383 Atomic orbital electron populations 1.22129 0.93740 1.03730 1.02898 1.22096 0.95918 0.78265 1.05866 1.45653 1.47045 1.13601 1.06234 1.23210 1.07547 0.93568 0.93970 1.22643 1.08249 0.98929 0.90962 1.70165 1.20252 1.20998 1.13674 1.23221 1.03896 0.87733 0.91924 1.20178 0.89589 1.02137 0.86203 1.60366 1.21580 1.26013 1.22849 1.22463 0.94280 1.03133 0.88737 1.21734 0.89165 0.96504 0.86079 0.89259 1.86620 1.62553 1.22268 1.65151 1.23512 0.83494 1.00139 0.97563 1.85881 1.33306 1.80257 1.25370 1.18681 0.94972 1.06955 0.83653 1.20707 0.99508 1.04180 0.93887 1.20807 0.98254 1.07747 0.95835 1.17963 0.92160 0.90635 0.94140 1.19693 0.92965 1.46650 0.93676 0.90500 1.26743 0.96478 0.91245 1.03597 1.69888 1.04428 1.34752 1.36771 0.85257 0.77561 0.79952 0.76957 1.18628 1.19391 1.18286 1.20890 1.00705 1.02932 0.92720 1.20012 0.94487 1.04585 0.96400 0.91581 0.93390 0.89254 0.87079 0.87880 0.77978 0.80367 0.92203 0.87596 0.83958 0.88111 0.92573 0.76761 0.91356 0.91265 0.85067 0.87520 0.90228 0.87363 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 71.98 0.74 -0.98 16 2 C 0.10 0.79 6.61 86.38 0.57 1.36 16 3 N -0.44 -6.46 2.75 -514.28 -1.41 -7.88 16 4 C -0.05 -0.70 11.58 83.09 0.96 0.26 16 5 C -0.06 -1.15 11.87 83.52 0.99 -0.16 16 6 N -0.53 -12.60 11.25 -188.13 -2.12 -14.72 16 7 C 0.20 3.68 7.42 138.13 1.02 4.71 16 8 C 0.15 2.14 5.99 85.56 0.51 2.65 16 9 N -0.68 -10.75 6.17 -517.93 -3.20 -13.95 16 10 C 0.04 0.62 5.32 86.30 0.46 1.08 16 11 C 0.13 2.71 3.43 30.59 0.10 2.81 16 12 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 13 O -0.56 -13.60 13.25 -144.34 -1.91 -15.51 16 14 C 0.03 0.78 4.37 71.98 0.31 1.09 16 15 O -0.33 -13.00 10.09 -85.26 -0.86 -13.86 16 16 C 0.00 0.06 6.71 22.79 0.15 0.21 16 17 C -0.16 -7.05 8.96 22.11 0.20 -6.85 16 18 C -0.21 -10.02 9.74 22.48 0.22 -9.80 16 19 C 0.05 2.90 5.57 -21.28 -0.12 2.78 16 20 C -0.50 -27.11 9.04 23.40 0.21 -26.90 16 21 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 22 C 0.03 1.69 5.13 85.24 0.44 2.13 16 23 N -0.83 -44.21 10.96 21.82 0.24 -43.97 16 24 Si 0.98 38.48 29.60 68.60 2.03 40.51 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 27 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 28 C -0.15 -8.30 8.64 22.48 0.19 -8.10 16 29 C -0.14 -6.76 9.92 22.11 0.22 -6.54 16 30 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.10 0.56 7.21 -2.39 -0.02 0.54 16 35 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 1.04 7.16 -2.39 -0.02 1.02 16 39 H 0.34 6.60 8.72 -89.69 -0.78 5.82 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.38 6.60 9.05 -74.06 -0.67 5.93 16 43 H 0.07 1.64 7.64 -2.39 -0.02 1.63 16 44 H 0.07 1.71 7.66 -2.39 -0.02 1.69 16 45 H 0.13 4.51 6.27 -2.91 -0.02 4.49 16 46 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 47 H 0.29 13.85 8.30 -92.71 -0.77 13.09 16 48 H 0.11 6.11 6.16 -2.91 -0.02 6.10 16 49 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -71.59 409.08 -0.52 -72.11 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.48 Total: 37.52 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 7.19 Total: -40.24 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -6.49 Total: -80.52 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -2.77 Total: -29.37 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -71.59 -0.52 -72.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579828318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.687 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds