Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47221 * 2 1 4 4 C 1.46506 * 119.99988 * 89.99727 * 3 2 1 5 5 C 1.50696 * 109.46911 * 89.99985 * 4 3 2 6 6 H 1.08003 * 120.00230 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99867 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99727 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99857 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47309 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47279 * 120.00040 * 9 7 5 12 12 H 1.48505 * 109.46875 * 239.99996 * 9 7 5 13 13 C 1.34777 * 120.00392 * 270.00309 * 3 2 1 14 14 O 1.21277 * 120.00327 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99450 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.46753 * 173.46288 * 15 13 3 17 17 C 1.40036 * 110.99970 * 285.92964 * 16 15 13 18 18 C 1.39408 * 129.93964 * 76.27007 * 17 16 15 19 19 C 1.37900 * 120.20049 * 180.30416 * 18 17 16 20 20 C 1.38310 * 120.26511 * 359.97438 * 19 18 17 21 21 C 1.38296 * 119.88068 * 359.85413 * 20 19 18 22 22 C 1.37919 * 120.08384 * 0.02996 * 21 20 19 23 23 C 1.51577 * 131.57360 * 180.28221 * 22 21 20 24 24 C 1.47908 * 111.00137 * 165.92189 * 16 15 13 25 25 H 1.08997 * 110.77684 * 212.94377 * 24 16 15 26 26 C 1.50699 * 110.77558 * 336.18874 * 24 16 15 27 27 O 1.21284 * 120.00108 * 59.74529 * 26 24 16 28 28 N 1.34775 * 120.00095 * 239.74608 * 26 24 16 29 29 C 1.46497 * 120.00703 * 180.02562 * 28 26 24 30 30 H 1.09006 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47389 * 300.00329 * 1 2 3 32 32 H 1.09001 * 109.47121 * 60.00152 * 1 2 3 33 33 H 1.08997 * 109.47389 * 239.99670 * 2 1 3 34 34 H 1.08995 * 109.46689 * 119.99914 * 2 1 3 35 35 H 1.09003 * 109.46709 * 330.00070 * 4 3 2 36 36 H 1.08999 * 109.47156 * 210.00437 * 4 3 2 37 37 H 0.97002 * 120.00383 * 359.97438 * 8 7 5 38 38 H 1.08999 * 109.47014 * 293.45716 * 15 13 3 39 39 H 1.08997 * 109.47431 * 53.46627 * 15 13 3 40 40 H 1.08004 * 119.90249 * 0.31937 * 18 17 16 41 41 H 1.08004 * 119.87099 * 179.97438 * 19 18 17 42 42 H 1.08003 * 120.05831 * 179.85140 * 20 19 18 43 43 H 1.08002 * 119.96114 * 180.02562 * 21 20 19 44 44 H 1.08999 * 110.74154 * 45.44261 * 23 22 21 45 45 H 1.09005 * 110.74424 * 282.10723 * 23 22 21 46 46 H 0.97010 * 119.99840 * 0.02562 * 28 26 24 47 47 H 1.08993 * 109.47476 * 179.97438 * 29 28 26 48 48 H 1.09005 * 109.46620 * 300.00206 * 29 28 26 49 49 H 1.09007 * 109.46763 * 59.99389 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6857 1.8349 1.7038 6 1 4.3428 1.2308 1.0958 7 6 4.1493 2.3904 2.8776 8 7 3.3493 3.1265 3.6176 9 14 5.9137 2.0974 3.4165 10 1 6.6013 1.2422 2.4160 11 1 6.6210 3.3988 3.5242 12 1 5.9216 1.4189 4.7374 13 6 2.2429 2.0166 -1.1672 14 8 2.6477 3.1598 -1.1671 15 6 1.9922 1.3060 -2.4723 16 7 2.1590 2.2512 -3.5843 17 6 1.0747 3.1342 -3.6593 18 6 0.7681 4.2438 -2.8730 19 6 -0.3719 4.9781 -3.1239 20 6 -1.2186 4.6197 -4.1572 21 6 -0.9194 3.5224 -4.9439 22 6 0.2207 2.7861 -4.6987 23 6 0.7954 1.5633 -5.3857 24 6 2.2548 1.5379 -4.8765 25 1 2.9130 2.0695 -5.5637 26 6 2.7297 0.1224 -4.6718 27 8 2.0875 -0.6385 -3.9792 28 7 3.8680 -0.2980 -5.2583 29 6 4.3294 -1.6741 -5.0599 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.5816 1.6876 2.0284 36 1 2.0954 3.1410 1.1384 37 1 2.4331 3.2790 3.3376 38 1 2.7027 0.4867 -2.5822 39 1 0.9768 0.9100 -2.4812 40 1 1.4254 4.5293 -2.0650 41 1 -0.6045 5.8365 -2.5111 42 1 -2.1117 5.1958 -4.3492 43 1 -1.5795 3.2417 -5.7514 44 1 0.7663 1.6797 -6.4691 45 1 0.2640 0.6624 -5.0787 46 1 4.3818 0.3108 -5.8120 47 1 5.2589 -1.8283 -5.6078 48 1 4.4997 -1.8506 -3.9978 49 1 3.5725 -2.3676 -5.4266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590603987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = -34.727266 kcal Electronic energy + Delta-G solvation = -31895.706466 eV Core-core repulsion = 27822.665277 eV Total energy + Delta-G solvation = -4073.041189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.71966 -40.59235 -40.26825 -37.56184 -37.06495 -35.75920 -35.24262 -33.48519 -31.66969 -31.22772 -30.79296 -29.14946 -27.85323 -27.28204 -24.99608 -24.58510 -24.25328 -22.38429 -22.34477 -21.46293 -20.39601 -19.03204 -18.56994 -18.31557 -17.93815 -17.21573 -17.04364 -16.84019 -16.52798 -16.11407 -15.94811 -15.69839 -15.41730 -15.15532 -14.92728 -14.75918 -14.41327 -14.26779 -14.16317 -13.91095 -13.86653 -13.80999 -13.64872 -13.45351 -13.23089 -13.10208 -13.01738 -12.72000 -12.65965 -12.49492 -12.42959 -12.09431 -11.99198 -11.89953 -11.22975 -11.13688 -10.75504 -10.64039 -10.38291 -10.14494 -9.77664 -9.50960 -9.01091 -8.72241 -6.47778 0.27510 0.41513 1.15591 1.45859 1.56978 1.68747 1.73496 2.04172 2.08408 2.50449 2.64572 2.83501 3.07136 3.34224 3.55923 3.59898 3.69551 3.92410 4.00210 4.05393 4.11377 4.20247 4.21024 4.27050 4.41720 4.43965 4.45751 4.49978 4.61141 4.65272 4.66581 4.77563 4.79378 4.81109 4.82491 4.89167 4.94757 5.06871 5.17021 5.30879 5.32106 5.42869 5.51801 5.58130 5.70474 5.75909 5.79362 6.11773 6.19482 6.37474 6.41910 6.61798 7.03634 7.25974 7.38971 8.62233 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.004095 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.478327 B = 6835.519269 C = 8407.301300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 N -0.601 5.601 4 C 0.253 3.747 5 C -0.615 4.615 6 H 0.041 0.959 7 C -0.030 4.030 8 N -0.930 5.930 9 Si 1.125 2.875 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.495 3.505 14 O -0.566 6.566 15 C 0.061 3.939 16 N -0.478 5.478 17 C 0.068 3.932 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.140 4.140 23 C -0.082 4.082 24 C 0.058 3.942 25 H 0.142 0.858 26 C 0.515 3.485 27 O -0.561 6.561 28 N -0.711 5.711 29 C 0.082 3.918 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.016 0.984 36 H -0.008 1.008 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.421 0.579 47 H 0.112 0.888 48 H 0.043 0.957 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.099 -8.126 -25.481 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.019 4.019 3 N -0.333 5.333 4 C 0.132 3.868 5 C -0.654 4.654 6 H 0.059 0.941 7 C -0.228 4.228 8 N -0.567 5.567 9 Si 0.945 3.055 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.284 3.716 14 O -0.446 6.446 15 C -0.067 4.067 16 N -0.197 5.197 17 C -0.027 4.027 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.120 4.120 24 C -0.052 4.052 25 H 0.159 0.841 26 C 0.300 3.700 27 O -0.440 6.440 28 N -0.362 5.362 29 C -0.062 4.062 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.010 0.990 37 H 0.064 0.936 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.151 0.849 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.148 0.852 45 H 0.106 0.894 46 H 0.258 0.742 47 H 0.131 0.869 48 H 0.062 0.938 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.715 -7.559 -23.690 25.309 hybrid contribution -1.338 -0.053 -0.709 1.515 sum -6.053 -7.611 -24.399 26.265 Atomic orbital electron populations 1.22094 0.94473 1.03525 1.01218 1.21648 0.95398 0.81581 1.03288 1.48087 1.64402 1.14886 1.05926 1.18800 0.95795 0.91180 0.81058 1.22545 0.97891 1.35344 1.09572 0.94065 1.27385 1.09496 0.92461 0.93459 1.70860 1.07653 1.37838 1.40329 0.82852 0.69434 0.76877 0.76306 1.20114 1.20616 1.19217 1.21097 0.77668 0.86764 0.86119 1.90550 1.46631 1.19697 1.87690 1.22291 1.03259 0.93716 0.87436 1.59924 1.41743 1.15216 1.02819 1.19522 0.90653 0.94866 0.97709 1.21043 0.98634 0.94963 1.00210 1.21212 0.93790 0.99884 0.98858 1.21442 1.00160 0.97709 0.94699 1.20735 0.95342 0.94316 1.00305 1.21167 0.95893 0.98265 0.98943 1.21589 0.91969 0.95542 1.02861 1.23005 0.99758 0.91394 0.91027 0.84066 1.20380 0.81467 0.88857 0.79288 1.90722 1.56995 1.57142 1.39143 1.45770 1.24036 1.15478 1.50926 1.21747 1.01285 0.81241 1.01903 0.88469 0.93618 0.93373 0.89724 0.90632 0.96646 0.99000 0.93602 0.86547 0.90882 0.88074 0.84912 0.82378 0.82454 0.85228 0.89443 0.74202 0.86923 0.93789 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 10.18 71.98 0.73 -4.09 16 2 C 0.10 3.87 5.84 86.38 0.50 4.37 16 3 N -0.60 -28.79 2.46 -826.17 -2.03 -30.82 16 4 C 0.25 14.55 4.47 85.63 0.38 14.93 16 5 C -0.62 -37.74 9.39 25.60 0.24 -37.50 16 6 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 7 C -0.03 -1.82 5.46 84.66 0.46 -1.35 16 8 N -0.93 -59.67 13.65 21.45 0.29 -59.38 16 9 Si 1.12 53.31 29.90 68.60 2.05 55.36 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 C 0.50 23.61 7.25 87.66 0.64 24.25 16 14 O -0.57 -31.56 12.94 -3.02 -0.04 -31.60 16 15 C 0.06 2.27 2.46 85.56 0.21 2.48 16 16 N -0.48 -15.92 4.65 -673.51 -3.13 -19.06 16 17 C 0.07 2.26 5.24 38.29 0.20 2.46 16 18 C -0.13 -4.77 9.18 22.47 0.21 -4.56 16 19 C -0.12 -3.41 10.02 22.21 0.22 -3.19 16 20 C -0.12 -2.61 10.06 22.30 0.22 -2.39 16 21 C -0.09 -1.79 10.03 22.21 0.22 -1.57 16 22 C -0.14 -3.46 6.23 -19.49 -0.12 -3.58 16 23 C -0.08 -1.54 6.48 30.67 0.20 -1.34 16 24 C 0.06 1.27 3.80 44.51 0.17 1.44 16 25 H 0.14 2.26 7.98 -2.39 -0.02 2.24 16 26 C 0.51 11.40 5.76 87.66 0.51 11.90 16 27 O -0.56 -16.00 13.41 -3.04 -0.04 -16.04 16 28 N -0.71 -10.45 5.71 -484.52 -2.77 -13.22 16 29 C 0.08 1.04 10.70 127.77 1.37 2.40 16 30 H 0.10 2.33 8.14 -2.38 -0.02 2.32 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.51 7.12 -2.39 -0.02 1.49 16 33 H 0.08 2.88 6.62 -2.39 -0.02 2.86 16 34 H 0.08 2.88 8.07 -2.39 -0.02 2.87 16 35 H 0.02 0.89 7.94 -2.39 -0.02 0.88 16 36 H -0.01 -0.52 7.29 -2.39 -0.02 -0.54 16 37 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 38 H 0.12 4.27 4.80 -2.39 -0.01 4.26 16 39 H 0.07 2.64 6.48 -2.39 -0.02 2.63 16 40 H 0.10 4.68 5.71 -2.91 -0.02 4.66 16 41 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 43 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 44 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.09 1.80 7.52 -2.38 -0.02 1.78 16 46 H 0.42 3.49 8.71 -92.70 -0.81 2.69 16 47 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -86.78 392.90 0.96 -85.82 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.27 Total: 24.25 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.36 Total: 4.69 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -7.64 Total: -122.48 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.08 Total: -47.64 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.05 Total: 55.36 kcal Total: -86.78 0.96 -85.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590603987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.093 kcal (2) G-P(sol) polarization free energy of solvation -86.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds