Wall clock time and date at job start Wed Apr 1 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47160 * 2 1 4 4 C 1.42901 * 113.99828 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.84972 * 338.30612 * 4 3 2 6 6 C 1.53786 * 113.61495 * 109.50301 * 4 3 2 7 7 C 1.53781 * 87.08180 * 89.19481 * 6 4 3 8 8 H 1.09001 * 113.61178 * 140.06086 * 7 6 4 9 9 N 1.46493 * 113.61783 * 270.88576 * 7 6 4 10 10 C 1.46497 * 120.00092 * 6.39075 * 9 7 6 11 11 S 1.65604 * 120.00100 * 186.39375 * 9 7 6 12 12 O 1.42096 * 104.27524 * 333.92763 * 11 9 7 13 13 O 1.42101 * 104.27739 * 206.06944 * 11 9 7 14 14 C 1.81402 * 104.44968 * 89.99695 * 11 9 7 15 15 C 1.52991 * 109.47327 * 181.55824 * 14 11 9 16 16 C 1.50705 * 115.55356 * 297.72287 * 15 14 11 17 17 H 1.08005 * 119.99988 * 90.07033 * 16 15 14 18 18 C 1.37878 * 120.00057 * 269.80305 * 16 15 14 19 19 N 1.31521 * 119.99607 * 6.54304 * 18 16 15 20 20 Si 1.86795 * 120.00229 * 186.54675 * 18 16 15 21 21 H 1.48498 * 109.47163 * 89.99466 * 20 18 16 22 22 H 1.48495 * 109.47283 * 209.99694 * 20 18 16 23 23 H 1.48502 * 109.47157 * 329.99563 * 20 18 16 24 24 C 1.53009 * 117.49736 * 83.38641 * 15 14 11 25 25 C 1.52997 * 117.50279 * 152.04583 * 15 14 11 26 26 C 1.53787 * 87.17397 * 25.47520 * 7 6 4 27 27 C 1.53003 * 113.61386 * 89.06764 * 26 7 6 28 28 C 1.52991 * 113.61675 * 219.97524 * 26 7 6 29 29 H 1.09001 * 109.46981 * 60.00359 * 1 2 3 30 30 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46679 * 300.00326 * 1 2 3 32 32 H 1.08999 * 109.47357 * 239.99355 * 2 1 3 33 33 H 1.09001 * 109.46981 * 119.99641 * 2 1 3 34 34 H 1.09005 * 113.61109 * 334.64962 * 6 4 3 35 35 H 1.08995 * 113.61323 * 203.74740 * 6 4 3 36 36 H 1.08997 * 109.47487 * 234.71798 * 10 9 7 37 37 H 1.09005 * 109.47156 * 354.71798 * 10 9 7 38 38 H 1.09000 * 109.47289 * 114.71533 * 10 9 7 39 39 H 1.09000 * 109.46852 * 61.55866 * 14 11 9 40 40 H 1.08995 * 109.47084 * 301.56251 * 14 11 9 41 41 H 0.96998 * 119.99861 * 185.01061 * 19 18 16 42 42 H 1.08997 * 117.49657 * 214.99999 * 24 15 14 43 43 H 1.09001 * 117.49784 * 0.02989 * 24 15 14 44 44 H 1.09006 * 117.49762 * 359.97438 * 25 15 14 45 45 H 1.09001 * 117.50259 * 144.99609 * 25 15 14 46 46 H 1.08999 * 109.46816 * 60.00068 * 27 26 7 47 47 H 1.09000 * 109.46902 * 180.02562 * 27 26 7 48 48 H 1.09001 * 109.47444 * 300.00375 * 27 26 7 49 49 H 1.08999 * 109.47140 * 59.99498 * 28 26 7 50 50 H 1.08995 * 109.47491 * 180.02562 * 28 26 7 51 51 H 1.08997 * 109.47260 * 299.99849 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9267 0.5630 0.3703 6 6 4.0074 1.9778 -1.3290 7 6 3.8441 3.3957 -0.7565 8 1 4.6727 4.0618 -0.9970 9 7 2.5354 3.9931 -1.0330 10 6 1.4844 3.1936 -1.6672 11 16 2.2439 5.5724 -0.6286 12 8 3.1373 5.8295 0.4461 13 8 0.8365 5.6324 -0.4418 14 6 2.7314 6.5139 -2.1006 15 6 2.5431 8.0088 -1.8353 16 6 1.1282 8.4463 -1.5562 17 1 0.7570 8.4591 -0.5421 18 6 0.3094 8.8356 -2.5950 19 7 0.7170 8.7039 -3.8385 20 14 -1.3788 9.5502 -2.2362 21 1 -1.2726 11.0247 -2.0957 22 1 -2.3017 9.2245 -3.3530 23 1 -1.9042 8.9694 -0.9745 24 6 3.6673 8.7433 -1.1019 25 6 3.4457 8.9809 -2.5978 26 6 3.9490 2.7616 0.6405 27 6 5.3841 2.6593 1.1610 28 6 2.9865 3.3687 1.6631 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.3687 1.7781 -2.1894 35 1 5.0457 1.6911 -1.4956 36 1 1.1280 3.7052 -2.5612 37 1 1.8860 2.2183 -1.9426 38 1 0.6571 3.0620 -0.9698 39 1 2.1115 6.2139 -2.9455 40 1 3.7783 6.3145 -2.3292 41 1 0.1728 9.0439 -4.5658 42 1 3.3834 9.5429 -0.4177 43 1 4.5412 8.1615 -0.8089 44 1 4.1740 8.5553 -3.2881 45 1 3.0161 9.9367 -2.8977 46 1 5.8201 3.6564 1.2228 47 1 5.3800 2.2021 2.1505 48 1 5.9747 2.0461 0.4803 49 1 1.9604 3.2340 1.3209 50 1 3.1174 2.8725 2.6246 51 1 3.1962 4.4327 1.7724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590748017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:59 Heat of formation + Delta-G solvation = -75.197434 kcal Electronic energy + Delta-G solvation = -31529.272263 eV Core-core repulsion = 27557.627356 eV Total energy + Delta-G solvation = -3971.644907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.55948 -38.58106 -37.98146 -37.63087 -36.71771 -35.14760 -34.08216 -31.97236 -31.06963 -29.89922 -28.12869 -27.73338 -27.41836 -24.83742 -23.72692 -23.00189 -22.85316 -21.43075 -20.29842 -19.07436 -18.39652 -18.38553 -17.48583 -17.10969 -16.94981 -16.68550 -16.45051 -16.10911 -15.77806 -15.38278 -15.18581 -14.98074 -14.54008 -14.23904 -14.04501 -13.78696 -13.71223 -13.60061 -13.50251 -13.35154 -13.16294 -13.03781 -12.95901 -12.84862 -12.82569 -12.55617 -12.50123 -12.45294 -12.30925 -12.15526 -12.01688 -11.94891 -11.73677 -11.68655 -11.52954 -11.37984 -10.89079 -10.84566 -10.54257 -10.13254 -10.03211 -9.57275 -8.21576 -6.36095 -0.48851 1.35000 1.37690 1.49036 1.99214 2.38760 2.74465 3.02486 3.08698 3.33402 3.40686 3.56440 3.59009 3.74939 3.98922 4.09157 4.14123 4.26039 4.29940 4.37700 4.42838 4.49808 4.51993 4.57580 4.58979 4.66827 4.72663 4.79327 4.80027 4.82135 4.92375 4.95842 4.97552 5.00720 5.10236 5.11690 5.17134 5.19544 5.23521 5.28899 5.32590 5.39239 5.44551 5.58992 5.59361 5.60528 5.68901 5.92578 6.19967 6.52648 6.70551 7.36403 8.86118 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.004127 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.532332 B = 6783.413976 C = 7749.802068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.376 6.376 4 C 0.075 3.925 5 H 0.098 0.902 6 C -0.150 4.150 7 C 0.121 3.879 8 H 0.094 0.906 9 N -0.978 5.978 10 C 0.099 3.901 11 S 2.621 3.379 12 O -0.977 6.977 13 O -0.994 6.994 14 C -0.557 4.557 15 C 0.006 3.994 16 C -0.530 4.530 17 H 0.045 0.955 18 C 0.041 3.959 19 N -0.893 5.893 20 Si 0.933 3.067 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.278 1.278 24 C -0.196 4.196 25 C -0.132 4.132 26 C -0.100 4.100 27 C -0.121 4.121 28 C -0.156 4.156 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.265 0.735 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.040 0.960 50 H 0.056 0.944 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -20.401 3.321 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.296 6.296 4 C 0.017 3.983 5 H 0.115 0.885 6 C -0.189 4.189 7 C 0.014 3.986 8 H 0.112 0.888 9 N -0.815 5.815 10 C -0.045 4.045 11 S 2.720 3.280 12 O -0.967 6.967 13 O -0.984 6.984 14 C -0.689 4.689 15 C 0.004 3.996 16 C -0.567 4.567 17 H 0.063 0.937 18 C -0.161 4.161 19 N -0.529 5.529 20 Si 0.758 3.242 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.203 1.203 24 C -0.233 4.233 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.178 4.178 28 C -0.214 4.214 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.060 0.940 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.010 -20.003 3.939 22.290 hybrid contribution -1.093 0.791 -0.529 1.449 sum 7.917 -19.213 3.410 21.058 Atomic orbital electron populations 1.21781 0.94137 1.02954 1.02158 1.22650 0.95366 0.83479 1.00983 1.88092 1.20209 1.26949 1.94311 1.23220 0.81643 0.97454 0.96030 0.88470 1.23870 1.04002 0.92788 0.98225 1.22075 0.83476 0.96432 0.96588 0.88819 1.57066 1.20358 1.27261 1.76837 1.21652 0.89513 0.97704 0.95642 1.04493 0.73404 0.73278 0.76821 1.93413 1.67355 1.84936 1.50984 1.93469 1.33068 1.85927 1.85934 1.29951 1.10151 1.09056 1.19710 1.18427 0.91223 0.86958 1.03009 1.20696 0.95944 1.47009 0.93060 0.93723 1.25506 1.00742 0.95073 0.94826 1.70075 1.39866 1.44258 0.98699 0.85928 0.80801 0.79321 0.78134 1.19005 1.19894 1.20332 1.23272 1.00478 1.04199 0.95364 1.22432 1.01427 1.00675 0.92524 1.22664 0.97051 0.95858 0.94647 1.21543 0.91790 1.02726 1.01769 1.21913 0.99006 1.02096 0.98375 0.92570 0.89224 0.93568 0.91718 0.92750 0.89095 0.84926 0.94028 0.86449 0.93735 0.86815 0.85288 0.92570 0.89969 0.88208 0.89479 0.91463 0.92361 0.91486 0.89537 0.94131 0.92526 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.05 0.82 6.51 71.98 0.47 1.29 16 3 O -0.38 -8.41 5.09 -148.98 -0.76 -9.17 16 4 C 0.07 1.37 3.78 31.22 0.12 1.49 16 5 H 0.10 1.27 7.85 -2.39 -0.02 1.25 16 6 C -0.15 -2.43 6.86 31.12 0.21 -2.22 16 7 C 0.12 3.02 3.48 45.52 0.16 3.18 16 8 H 0.09 2.19 8.10 -2.39 -0.02 2.17 16 9 N -0.98 -31.77 2.33 -513.77 -1.19 -32.97 16 10 C 0.10 2.99 8.02 127.77 1.02 4.01 16 11 S 2.62 112.88 4.79 -56.49 -0.27 112.61 16 12 O -0.98 -42.93 14.00 -127.65 -1.79 -44.72 16 13 O -0.99 -52.14 16.52 -127.65 -2.11 -54.25 16 14 C -0.56 -24.25 6.04 71.98 0.43 -23.82 16 15 C 0.01 0.30 1.46 -52.93 -0.08 0.22 16 16 C -0.53 -30.62 7.83 25.60 0.20 -30.42 16 17 H 0.04 2.71 7.82 -2.91 -0.02 2.69 16 18 C 0.04 2.33 5.36 84.65 0.45 2.79 16 19 N -0.89 -50.70 12.70 21.45 0.27 -50.43 16 20 Si 0.93 45.53 29.55 68.60 2.03 47.55 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 24 C -0.20 -8.66 9.96 30.62 0.30 -8.36 16 25 C -0.13 -6.10 9.14 30.62 0.28 -5.82 16 26 C -0.10 -2.35 1.35 -51.56 -0.07 -2.42 16 27 C -0.12 -2.08 9.08 71.98 0.65 -1.43 16 28 C -0.16 -4.94 7.73 71.98 0.56 -4.38 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.45 5.91 -2.38 -0.01 1.43 16 35 H 0.13 1.27 7.65 -2.39 -0.02 1.26 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 2.68 4.00 -2.38 -0.01 2.67 16 38 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16 39 H 0.11 5.24 8.14 -2.39 -0.02 5.22 16 40 H 0.13 4.58 8.11 -2.39 -0.02 4.56 16 41 H 0.27 14.24 8.32 -92.71 -0.77 13.47 16 42 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 44 H 0.09 3.59 8.14 -2.38 -0.02 3.57 16 45 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.09 0.96 7.34 -2.39 -0.02 0.94 16 49 H 0.04 1.44 6.60 -2.39 -0.02 1.43 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.06 2.46 5.15 -2.39 -0.01 2.45 16 Total: -1.00 -73.76 401.67 2.53 -71.23 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.89 Total: 27.83 kcal Atomic # 6 Polarization: -73.15 SS G_CDS: 5.46 Total: -67.69 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -0.92 Total: -83.40 kcal Atomic # 8 Polarization: -103.49 SS G_CDS: -4.65 Total: -108.14 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 112.88 SS G_CDS: -0.27 Total: 112.61 kcal Total: -73.76 2.53 -71.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590748017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.968 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds